Diff of the two buildlogs: -- --- b1/build.log 2023-06-09 00:38:53.866638179 +0000 +++ b2/build.log 2023-06-09 00:46:34.722490714 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 8 12:29:30 -12 2023 -I: pbuilder-time-stamp: 1686270570 +I: Current time: Fri Jun 9 14:39:07 +14 2023 +I: pbuilder-time-stamp: 1686271147 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./python-csb_1.2.5+dfsg.orig.tar.gz] I: copying [./python-csb_1.2.5+dfsg-8.debian.tar.xz] I: Extracting source -gpgv: Signature made Tue Dec 6 03:39:00 2022 -12 +gpgv: Signature made Wed Dec 7 05:39:00 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,135 +31,167 @@ dpkg-source: info: applying avoid-multiple-namespace.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/32464/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/24103/tmp/hooks/D01_modify_environment starting +debug: Running on virt64b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 9 14:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/24103/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/24103/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='67e556f159204398a5b7a7d0282324bc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='32464' - PS1='# ' - PS2='> ' + INVOCATION_ID=90a20988b4a64458b257a0149e5f7c2d + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=24103 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/pbuilderrc_s24N --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-8.dsc' - SUDO_GID='112' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/pbuilderrc_qvjQ --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OaYYgVeY/b2 --logfile b2/build.log --extrapackages usrmerge python-csb_1.2.5+dfsg-8.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32b 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/32464/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Jun 9 14:39 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/24103/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -327,7 +359,7 @@ Get: 118 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf python3-matplotlib armhf 3.6.3-1+b1 [6784 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] -Fetched 82.7 MB in 7s (11.6 MB/s) +Fetched 82.7 MB in 7s (11.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) @@ -828,8 +860,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-8_source.changes +I: user script /srv/workspace/pbuilder/24103/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/24103/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-8_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-8 dpkg-buildpackage: info: source distribution unstable @@ -875,145 +918,145 @@ creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb copying csb/build.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb copying csb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test +copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test +copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio copying csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics -copying csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics -copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics -copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics -copying csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics -copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics -copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io -copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io -copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io -copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core copying csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech +copying csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech +copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech +copying csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps +copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps +copying csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps +copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps +copying csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps +copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps +copying csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps -copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps -copying csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps -copying csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps -copying csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps -copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps -copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps copying csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech -copying csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech -copying csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech -copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test -copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test -copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io +copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io +copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io +copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric copying csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr -copying csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm -copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm -copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils -copying csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments -copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments -copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence -copying csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence -copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure -copying csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf -copying csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf -copying csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers -copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics +copying csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics +copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics +copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics +copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics +copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics +copying csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io -copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech -copying csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech +copying csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io +copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence +copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io -copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure +copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils -copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io +copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence -copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure -copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred -copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils +copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment +copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe +copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck +copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred +copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck -copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans -copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe -copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment -copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans +copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence +copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence +copying csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr +copying csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure +copying csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm +copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm +copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments +copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments +copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils +copying csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf +copying csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf +copying csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers +copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO @@ -1182,10 +1225,136 @@ re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence '\S' re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence '\w' - "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? self.assertFalse(self.enum.C is 66) +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence '\w' + "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] +testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> + self.a3m = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> + ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testHMMSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testHMMSubregion) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> + ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testInsertionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testInsertionAt) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testLength) ... ok +testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testMatches) ... ok +testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testRows) ... ok +testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testSize) ... ok +testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testToString) ... ok +testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testAdd) ... ok +testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testColumns) ... ok +testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testFormat) ... ok +testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testGapAt) ... ok +testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testIndexer) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testLength) ... ok +testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowColumns) ... ok +testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowMap) ... ok +testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowResidues) ... ok +testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRows) ... ok +testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok +testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3aykdci4' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp013gscya' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testExtract) ... ok +testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testHeader) ... ok +testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testId) ... ok +testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIndexeres) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIterator) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testLength) ... ok +testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSequence) ... ok +testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testStrip) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSubregion) ... ok +testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok +testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7ow1utrx' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpme709i8x' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testExtract) ... ok +testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testHeader) ... ok +testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testId) ... ok +testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIndexeres) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIterator) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testLength) ... ok +testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSequence) ... ok +testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testStrip) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSubregion) ... ok +testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok +testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptyijhp2d' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfq4ojan5' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testExtract) ... ok +testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testHeader) ... ok +testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testId) ... ok +testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testIndexeres) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testIterator) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testLength) ... ok +testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testSequence) ... ok +testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testStrip) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testSubregion) ... ok +testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testToString) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testType) ... ok +testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testAdd) ... ok +testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testColumns) ... ok +testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testFormat) ... ok +testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testGapAt) ... ok +testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testIndexer) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testLength) ... ok +testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowColumns) ... ok +testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowMap) ... ok +testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowResidues) ... ok +testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok +testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok +testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpevheot_9' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplavcsysg' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testAlignment) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testConstructor) ... ok +testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testEnd) ... ok +testGaps (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testGaps) ... ok +testIdenticals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdenticals) ... ok +testIdentity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdentity) ... ok +testIsEmpty (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIsEmpty) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testLength) ... ok +testQend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQend) ... ok +testQstart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQstart) ... ok +testQuery (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQuery) ... ok +testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testScore) ... ok +testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStart) ... ok +testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStr) ... ok +testSubject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testSubject) ... ok +testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testAlign) ... ok +testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testEmptyAlignment) ... ok +testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix.testScore) ... ok +testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok +testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok +testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok testConnectedAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok @@ -1243,25 +1412,149 @@ testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok testSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok testSimpleSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok -testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> - content = open(filename).read() +testAppendAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) +@see: [CSB 0000122] ... ok +testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) +@see: [CSB 0000030] ... ok +testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) +@see: [CSB 0000029] ... ok +testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) +Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' +testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> + return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok -testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) -@see: [CSB 0000056] ... ok -testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> - for line in open(structure_file): +testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok +testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok +testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok +testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok +testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok +testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) +@todo: more checks are needed here (e.g. append an atom to different residues) ... ok +testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) +@bug: check for overlapping SNs in a Chain ... ok +testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok +testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok +testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok +testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok +testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok +testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok +testComputeTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok +testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok +testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok +testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok +testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok +testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok +testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok +testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok +testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok +testSecStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok +testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok +testSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok +testTMScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok +testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok +testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok +testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok +testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok +testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok +testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) +@todo: more checks are needed here (e.g. append an atom to different residues) ... ok +testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) +@bug: check for overlapping SNs in a Chain ... ok +testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok +testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok +testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok +testFirstModel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok +testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok +testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok +testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok +testHasStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok +testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok +testInsertionCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok +testIsModified (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok +testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok +testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok +testSequenceNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok +testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok +testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok +testFirstChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok +testFromChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok +testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok +testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok +testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok +testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpme7iahms' mode='r' encoding='UTF-8'> + self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpuxrsree0' mode='r' encoding='UTF-8'> - break +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpz4bx5bbv' mode='r' encoding='UTF-8'> + self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok -testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok -testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) -@see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp20ldb5vp' mode='r' encoding='UTF-8'> - generated = open(tmp.name).read() +testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok +testConversion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok +testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok +testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok +testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok +testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok +testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok +testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok +testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok +testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok +testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok +testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok +testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok +testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok +testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok +testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok +testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok +testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok +testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok +testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok +testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok +testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok +testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok +testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok +testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok +testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok +testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok +testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok +testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok +testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok +testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok +testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok +testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCommaSplitting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting) @@ -1341,6 +1634,28 @@ for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok +testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok +testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> + content = open(filename).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok +testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) +@see: [CSB 0000056] ... ok +testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> + for line in open(structure_file): +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3rhglf1m' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok +testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok +testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) +@see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1g2rrit2' mode='r' encoding='UTF-8'> + generated = open(tmp.name).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok @@ -1362,71 +1677,28 @@ testReadRawHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok testReconstructHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok testWriteDensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok -testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok -testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok -testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok -testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) -Test creating an empty L{Clans} instance. ... ok -testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok -testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok -testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok -testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok -testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok -testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok -testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok -testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> - self._clans_instance.filename)).read().split('\n', 1)[1] -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok -testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok -testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok -testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) -Test parsing of a small dummy file with known values ... ok -testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) -Test whether the premature (before parsing) access to clans_instance is ... ok -testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok -testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok -testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok -testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok -testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok -testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok -testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp76jldn9o' mode='r' encoding='UTF-8'> +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6066ksr_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9fjhh9i8' mode='r' encoding='UTF-8'> +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpunj20blz' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpel0gfdec' mode='r' encoding='UTF-8'> +testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpt_hyfj9q' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4p766w70' mode='r' encoding='UTF-8'> +testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpl4tu2_on' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplhrxw1jm' mode='r' encoding='UTF-8'> +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpq_nnaok7' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpx8hjedy6' mode='r' encoding='UTF-8'> +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe7igax0v' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1438,11 +1710,11 @@ testReadJunk (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok testReadNucleicSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok testReadProteinSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphf83b_fw' mode='r' encoding='UTF-8'> +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqxvqzid6' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp13kukkh9' mode='r' encoding='UTF-8'> +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpz_ift02_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1456,64 +1728,33 @@ testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok testMakeAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... ok testMakeEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok -testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok -testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok -testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok -testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok -testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok -testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok -testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok -testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok -testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok -testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok -testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok -testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok -testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok -testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok -testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok -testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok -testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok -testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok -testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok -testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok -testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok -testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok -testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok -testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok -testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok -testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok -testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok -testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok -testRmsdMirrorImage (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok -testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) -@see: [CSB 0000058] ... ok -testCenterOfMass (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok -testDeg (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok -testDistance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok -testDistanceMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok -testFindPairs (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok -testFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok -testFitWellordered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok -testInertiaTensor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok -testRad (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok -testRadiusOfGyration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok -testRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok -testRmsdCur (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok -testScaleAndFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok -testSecondMoments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok -testTmScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok -testTmSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok -testTorsionRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok -testWFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok -testWrmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok +testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok +testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok +testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) +Test creating an empty L{Clans} instance. ... ok +testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok +testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok +testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok +testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok +testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok +testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok +testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok +testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> + self._clans_instance.filename)).read().split('\n', 1)[1] +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok +testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok +testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok +testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) +Test parsing of a small dummy file with known values ... ok +testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) +Test whether the premature (before parsing) access to clans_instance is ... ok +testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok +testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok +testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok +testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok +testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok testAnchoredAround (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... ok testBackbone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok testBackboneAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok @@ -1546,7 +1787,7 @@ testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok testAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok testComplement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp71gzuslm' mode='r' encoding='UTF-8'> +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpub72bo73' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1590,240 +1831,159 @@ testGetAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok testTarget (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok testThreshold (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok -testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> - self.a3m = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> - ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback +testRmsdMirrorImage (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok +testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) +@see: [CSB 0000058] ... ok +testCenterOfMass (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok +testDeg (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok +testDistance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok +testDistanceMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok +testFindPairs (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok +testFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok +testFitWellordered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok +testInertiaTensor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok +testRad (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok +testRadiusOfGyration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok +testRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok +testRmsdCur (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok +testScaleAndFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok +testSecondMoments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok +testTmScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok +testTmSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok +testTorsionRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok +testWFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok +testWrmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok +testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok +testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok +testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. + self.assertNotEquals(id(obj), id(copy)) ok -testHMMSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testHMMSubregion) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> - ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok +testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok +testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok +testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok +testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok +testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testComparison) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok +testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok +testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok +testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok +testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok +testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok +testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok +testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok +testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok +testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok +testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok +testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok +testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok +testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok +testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok +testBoltzmann (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok +testComposite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok +testTsallis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmfhk9x7u' mode='r' encoding='UTF-8'> + content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testInsertionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testInsertionAt) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testLength) ... ok -testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testMatches) ... ok -testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testRows) ... ok -testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testSize) ... ok -testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testToString) ... ok -testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testAdd) ... ok -testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testColumns) ... ok -testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testFormat) ... ok -testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testGapAt) ... ok -testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testIndexer) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testLength) ... ok -testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowColumns) ... ok -testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowMap) ... ok -testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowResidues) ... ok -testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRows) ... ok -testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok -testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyi0hn8er' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxx33zcda' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) +testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok +testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok +testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok +testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok +testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... ok +testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok +testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok +testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok +testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok +testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp301u52ho' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testExtract) ... ok -testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testHeader) ... ok -testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testId) ... ok -testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIndexeres) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIterator) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testLength) ... ok -testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSequence) ... ok -testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testStrip) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSubregion) ... ok -testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok -testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3iije_th' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3nfc9qb7' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) +testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_zq1akky' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testExtract) ... ok -testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testHeader) ... ok -testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testId) ... ok -testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIndexeres) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIterator) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testLength) ... ok -testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSequence) ... ok -testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testStrip) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSubregion) ... ok -testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok -testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_mzr61s4' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_igkge54' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) +testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3_u62dj1' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testExtract) ... ok -testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testHeader) ... ok -testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testId) ... ok -testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testIndexeres) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testIterator) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testLength) ... ok -testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testSequence) ... ok -testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testStrip) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testSubregion) ... ok -testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testToString) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testType) ... ok -testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testAdd) ... ok -testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testColumns) ... ok -testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testFormat) ... ok -testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testGapAt) ... ok -testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testIndexer) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testLength) ... ok -testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowColumns) ... ok -testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowMap) ... ok -testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowResidues) ... ok -testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok -testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok -testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp72tznel8' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpiwmb4kjg' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) +testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok +testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok +testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok +testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok +testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok +testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... ok +testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testAlignment) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testConstructor) ... ok -testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testEnd) ... ok -testGaps (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testGaps) ... ok -testIdenticals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdenticals) ... ok -testIdentity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdentity) ... ok -testIsEmpty (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIsEmpty) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testLength) ... ok -testQend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQend) ... ok -testQstart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQstart) ... ok -testQuery (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQuery) ... ok -testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testScore) ... ok -testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStart) ... ok -testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStr) ... ok -testSubject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testSubject) ... ok -testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testAlign) ... ok -testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testEmptyAlignment) ... ok -testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix.testScore) ... ok -testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok -testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok -testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok -testAppendAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) -@see: [CSB 0000122] ... ok -testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) -@see: [CSB 0000030] ... ok -testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) -@see: [CSB 0000029] ... ok -testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) -Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' -testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> - return csb.io.Pickle.load(open(file, 'rb')) +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwzl771v2' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok -testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok -testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok -testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok -testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok -testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) -@todo: more checks are needed here (e.g. append an atom to different residues) ... ok -testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) -@bug: check for overlapping SNs in a Chain ... ok -testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok -testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok -testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok -testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok -testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok -testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok -testComputeTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok -testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok -testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok -testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok -testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok -testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok -testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok -testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok -testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok -testSecStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok -testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok -testSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok -testTMScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok -testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok -testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok -testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok -testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok -testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok -testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) -@todo: more checks are needed here (e.g. append an atom to different residues) ... ok -testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) -@bug: check for overlapping SNs in a Chain ... ok -testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok -testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok -testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok -testFirstModel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok -testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok -testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok -testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok -testHasStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok -testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok -testInsertionCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok -testIsModified (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok -testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok -testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok -testSequenceNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok -testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok -testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok -testFirstChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok -testFromChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok -testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok -testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok -testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok -testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgi7u2yjl' mode='r' encoding='UTF-8'> - self.assertEqual(pdbraw, open(tmp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp133x9_el' mode='r' encoding='UTF-8'> - self.assertEqual(pdbraw, open(tmp.name).read()) +testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok +testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok +testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok +testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok +testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok +testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok +testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok +testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok +testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok +testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok +testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5cswuypz' mode='r' encoding='UTF-8'> + self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok -testConversion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok -testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok +testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok +testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok +testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok +testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok +testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok +testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok +testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok +testCaching (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok +testDiagonalTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' +testUnityMultipleTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' +testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) +r526 ... ok +testDegree2Radian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok +testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok +testExp (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok +testFromPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok +testLog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok +testPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok +testRadian2Degree (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok +testRotationMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok +testLogTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok +testLogTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok +testSimpson2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok +testTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok +testTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok testNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok -testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok -testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok -testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok -testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok -testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok -testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok -testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok -testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok -testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok -testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' -testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok -testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok -testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok testEnsemble (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma) @@ -1836,6 +1996,19 @@ The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok +testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok +testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok +testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok +testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok +testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok +testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok +testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok +testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok +testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok +testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok +testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok +testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok +testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok @@ -1934,139 +2107,9 @@ testFiveReplicasOffset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ok testFourReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ok testTwoReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ok -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpq2kjwtw2' mode='r' encoding='UTF-8'> - content = open(self.temp.name).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok -testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok -testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok -testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok -testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... ok -testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok -testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok -testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok -testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok -testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp65ikv06r' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpteli2ocl' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'A/B/C/') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnxb7os9f' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok -testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok -testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok -testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok -testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok -testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... ok -testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsl5afa3i' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok -testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok -testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok -testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok -testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok -testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok -testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok -testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok -testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok -testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok -testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsytfnfch' mode='r' encoding='UTF-8'> - self.assertEqual(data, open(temp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok -testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok -testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok -testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok -testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. - self.assertNotEquals(id(obj), id(copy)) -ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok -testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok -testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok -testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok -testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok -testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testComparison) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok -testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok -testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok -testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok -testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok -testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok -testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok -testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok -testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok -testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok -testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok -testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok -testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok -testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok -testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok -testBoltzmann (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok -testComposite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok -testTsallis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok -testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok -testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok -testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok -testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok -testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok -testCaching (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok -testDiagonalTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' -testUnityMultipleTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' -testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) -r526 ... ok -testDegree2Radian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok -testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok -testExp (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok -testFromPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok -testLog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok -testPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok -testRadian2Degree (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok -testRotationMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok -testLogTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok -testLogTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok -testSimpson2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok -testTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok -testTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok ---------------------------------------------------------------------- -Ran 697 tests in 288.428s +Ran 697 tests in 280.097s OK (skipped=6) make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' @@ -2152,411 +2195,411 @@ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11 creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/dssp.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/cs.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/mrc.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/fasta.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/hhpred.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/noe.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/whatif.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/clans.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/procheck.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/ars.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/maxent.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/rand.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/mixtures.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/scalemixture.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__pycache__/tsv.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/wham.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/ensembles.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/data creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/app.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/resources +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/structure/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/whatif.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/hhpred.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/fasta.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/cs.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/noe.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/dssp.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/procheck.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/mrc.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/clans.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/utils/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/core/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/ensembles.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statmech/__pycache__/wham.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/io/__pycache__/tsv.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__pycache__/integrators.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/numeric/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/scalemixture.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/maxent.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/mixtures.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/rand.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/__init__.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/__pycache__/ars.cpython-311.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-311.pyc +/usr/lib/python3.11/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/app.py to app.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/procheck.py to procheck.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/fasta.py to fasta.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/dssp.py to dssp.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/whatif.py to whatif.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/psipred.py to psipred.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/clans.py to clans.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/svg.py to svg.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/cs.py to cs.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/whatif.py to whatif.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/svg.py to svg.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/procheck.py to procheck.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/psipred.py to psipred.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/noe.py to noe.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/vasco.py to vasco.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/mrc.py to mrc.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/cs.py to cs.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/vasco.py to vasco.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/io/fasta.py to fasta.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/ars.py to ars.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/maxent.py to maxent.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/rand.py to rand.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/build.py to build.cpython-311.pyc /usr/lib/python3.11/dist-packages/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/dist-packages/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.11/dist-packages/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/plots.py to plots.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/tsv.py to tsv.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/core/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/wham.py to wham.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/precision.py to precision.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/csfrag.py to csfrag.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/helloworld.py to helloworld.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/bfit.py to bfit.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/embd.py to embd.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/precision.py to precision.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/bfite.py to bfite.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/csfrag.py to csfrag.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/embd.py to embd.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/bfit.py to bfit.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/apps/promix.py to promix.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/wham.py to wham.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-311.pyc -/usr/lib/python3.11/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/app.py to app.cpython-311.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/test/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/tsv.py to tsv.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/plots.py to plots.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/io/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/integrators.py to integrators.cpython-311.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/numeric/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/ars.py to ars.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/rand.py to rand.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb/statistics/maxent.py to maxent.cpython-311.pyc running install_egg_info Copying csb.egg-info to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.11/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt @@ -2601,12 +2644,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/24103/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/24103/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/32464 and its subdirectories -I: Current time: Thu Jun 8 12:38:49 -12 2023 -I: pbuilder-time-stamp: 1686271129 +I: removing directory /srv/workspace/pbuilder/24103 and its subdirectories +I: Current time: Fri Jun 9 14:46:25 +14 2023 +I: pbuilder-time-stamp: 1686271585