Diff of the two buildlogs: -- --- b1/build.log 2024-01-15 18:07:36.100054109 +0000 +++ b2/build.log 2024-01-15 20:44:17.609977102 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 15 04:37:15 -12 2024 -I: pbuilder-time-stamp: 1705336635 +I: Current time: Tue Jan 16 08:09:12 +14 2024 +I: pbuilder-time-stamp: 1705342152 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -27,51 +27,83 @@ dpkg-source: info: applying set_R_LIBS_USER_and_SITE_in_Renviron.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/14401/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/11069/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4pro0. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 15 18:10 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/11069/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/11069/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='139b6401076e403985e77da12e29f699' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='14401' - PS1='# ' - PS2='> ' + INVOCATION_ID=965052e174d34345910ee56938bc5674 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=11069 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HTf4Mvi0/pbuilderrc_wDny --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HTf4Mvi0/b1 --logfile b1/build.log r-base_4.2.2.20221110-2.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HTf4Mvi0/pbuilderrc_rifq --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HTf4Mvi0/b2 --logfile b2/build.log r-base_4.2.2.20221110-2.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64a 6.1.0-17-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-armmp #1 SMP Debian 6.1.69-1 (2023-12-30) armv7l GNU/Linux I: ls -l /bin - total 4964 + total 4976 -rwxr-xr-x 1 root root 838488 Apr 23 2023 bash -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat @@ -129,7 +161,7 @@ -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 14152 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 15 18:10 sh -> /bin/bash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 23 2023 su @@ -155,7 +187,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/14401/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/11069/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -597,7 +629,7 @@ Get: 324 http://deb.debian.org/debian bookworm/main armhf xkb-data all 2.35.1-1 [764 kB] Get: 325 http://deb.debian.org/debian bookworm/main armhf xserver-common all 2:21.1.7-3+deb12u2 [2382 kB] Get: 326 http://deb.debian.org/debian bookworm/main armhf xvfb armhf 2:21.1.7-3+deb12u2 [3010 kB] -Fetched 981 MB in 46s (21.2 MB/s) +Fetched 981 MB in 2min 29s (6601 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17881 files and directories currently installed.) @@ -1635,8 +1667,8 @@ Setting up tzdata (2023c-5+deb12u1) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Jan 15 16:50:57 UTC 2024. -Universal Time is now: Mon Jan 15 16:50:57 UTC 2024. +Local time is now: Mon Jan 15 18:22:41 UTC 2024. +Universal Time is now: Mon Jan 15 18:22:41 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasound2-data (1.2.8-1) ... @@ -2147,7 +2179,11 @@ fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/r-base-4.2.2.20221110/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-base_4.2.2.20221110-2_source.changes +I: user script /srv/workspace/pbuilder/11069/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/11069/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-base-4.2.2.20221110/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-base_4.2.2.20221110-2_source.changes dpkg-buildpackage: info: source package r-base dpkg-buildpackage: info: source version 4.2.2.20221110-2 dpkg-buildpackage: info: source distribution unstable @@ -5196,10 +5232,10 @@ trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm -make[3]: Entering directory '/tmp/Rjavareconf.pyBtr3' +make[3]: Entering directory '/tmp/Rjavareconf.7GiBFc' gcc -I"/build/reproducible-path/r-base-4.2.2.20221110/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest.o gcc -shared -L/build/reproducible-path/r-base-4.2.2.20221110/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/build/reproducible-path/r-base-4.2.2.20221110/lib -lR -make[3]: Leaving directory '/tmp/Rjavareconf.pyBtr3' +make[3]: Leaving directory '/tmp/Rjavareconf.7GiBFc' JAVA_HOME : /usr/lib/jvm/default-java @@ -7935,7 +7971,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on refman.pdf (2305 pages, 5798257 bytes). +Output written on refman.pdf (2305 pages, 5798254 bytes). Transcript written on refman.log. This is makeindex, version 2.16 [TeX Live 2022] (kpathsea + Thai support). Scanning input file refman.idx..................done (14740 entries accepted, 36 rejected). @@ -10250,7 +10286,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on refman.pdf (2415 pages, 6535450 bytes). +Output written on refman.pdf (2415 pages, 6535433 bytes). Transcript written on refman.log. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. @@ -12554,7 +12590,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on refman.pdf (2415 pages, 6535325 bytes). +Output written on refman.pdf (2415 pages, 6535330 bytes). Transcript written on refman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info @@ -17301,7 +17337,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on fullrefman.pdf (2305 pages, 5798257 bytes). +Output written on fullrefman.pdf (2305 pages, 5798254 bytes). Transcript written on fullrefman.log. This is makeindex, version 2.16 [TeX Live 2022] (kpathsea + Thai support). Scanning input file fullrefman.idx..................done (14740 entries accepted, 36 rejected). @@ -19616,7 +19652,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on fullrefman.pdf (2415 pages, 6535450 bytes). +Output written on fullrefman.pdf (2415 pages, 6535433 bytes). Transcript written on fullrefman.log. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. @@ -21920,7 +21956,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on fullrefman.pdf (2415 pages, 6535325 bytes). +Output written on fullrefman.pdf (2415 pages, 6535330 bytes). Transcript written on fullrefman.log. make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc' @@ -22461,9 +22497,9 @@ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 1772 --rw-r--r-- 1 root root 1076384 Jan 15 06:05 libRmath.a --rwxr-xr-x 1 root root 730976 Jan 15 06:05 libRmath.so -drwxr-xr-x 2 root root 4096 Jan 15 06:05 pkgconfig +-rw-rw-r-- 1 root root 1076384 Jan 16 10:40 libRmath.a +-rwxrwxr-x 1 root root 730976 Jan 16 10:40 libRmath.so +drwxr-xr-x 2 root root 4096 Jan 16 10:40 pkgconfig renamed 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' @@ -22525,16 +22561,16 @@ dh_installdeb -a dh_perl -a dh_shlibdeps -a -l /build/reproducible-path/r-base-4.2.2.20221110/debian/r-base-core/usr/lib/R/lib -dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dh_gencontrol -a dh_md5sums -a dh_builddeb -a -dpkg-deb: building package 'r-base-core' in '../r-base-core_4.2.2.20221110-2_armhf.deb'. -dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.2.2.20221110-2_armhf.deb'. -dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_4.2.2.20221110-2_armhf.deb'. dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_4.2.2.20221110-2_armhf.deb'. +dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_4.2.2.20221110-2_armhf.deb'. +dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.2.2.20221110-2_armhf.deb'. +dpkg-deb: building package 'r-base-core' in '../r-base-core_4.2.2.20221110-2_armhf.deb'. *** binary-indep *** dh_testdir -i dh_testroot -i @@ -22543,13 +22579,13 @@ dh_installdocs -v -pr-doc-html install -p -m0644 debian/copyright debian/r-doc-html/usr/share/doc/r-doc-html/copyright install -m0755 -d debian/r-doc-html/usr/share/doc-base/ - install -p -m0644 debian/r-doc-html.doc-base.exts debian/r-doc-html/usr/share/doc-base/r-doc-html.r-extensions - install -p -m0644 debian/r-doc-html.doc-base.data debian/r-doc-html/usr/share/doc-base/r-doc-html.r-data - install -p -m0644 debian/r-doc-html.doc-base.intro debian/r-doc-html/usr/share/doc-base/r-doc-html.r-intro install -p -m0644 debian/r-doc-html.doc-base.lang debian/r-doc-html/usr/share/doc-base/r-doc-html.r-language install -p -m0644 debian/r-doc-html.doc-base.admin debian/r-doc-html/usr/share/doc-base/r-doc-html.r-admin install -p -m0644 debian/r-doc-html.doc-base.ints debian/r-doc-html/usr/share/doc-base/r-doc-html.r-ints install -p -m0644 debian/r-doc-html.doc-base.faq debian/r-doc-html/usr/share/doc-base/r-doc-html.r-faq + install -p -m0644 debian/r-doc-html.doc-base.data debian/r-doc-html/usr/share/doc-base/r-doc-html.r-data + install -p -m0644 debian/r-doc-html.doc-base.intro debian/r-doc-html/usr/share/doc-base/r-doc-html.r-intro + install -p -m0644 debian/r-doc-html.doc-base.exts debian/r-doc-html/usr/share/doc-base/r-doc-html.r-extensions dh_installchangelogs -i dh_installdirs -pr-base-dev usr/share/R/debian install -p -m 0755 debian/r-cran.mk \ @@ -22561,11 +22597,11 @@ dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'r-base' in '../r-base_4.2.2.20221110-2_all.deb'. -dpkg-deb: building package 'r-recommended' in '../r-recommended_4.2.2.20221110-2_all.deb'. -dpkg-deb: building package 'r-doc-pdf' in '../r-doc-pdf_4.2.2.20221110-2_all.deb'. -dpkg-deb: building package 'r-base-dev' in '../r-base-dev_4.2.2.20221110-2_all.deb'. dpkg-deb: building package 'r-base-html' in '../r-base-html_4.2.2.20221110-2_all.deb'. dpkg-deb: building package 'r-doc-html' in '../r-doc-html_4.2.2.20221110-2_all.deb'. +dpkg-deb: building package 'r-recommended' in '../r-recommended_4.2.2.20221110-2_all.deb'. +dpkg-deb: building package 'r-base-dev' in '../r-base-dev_4.2.2.20221110-2_all.deb'. +dpkg-deb: building package 'r-doc-pdf' in '../r-doc-pdf_4.2.2.20221110-2_all.deb'. dpkg-deb: building package 'r-doc-info' in '../r-doc-info_4.2.2.20221110-2_all.deb'. dpkg-genbuildinfo --build=binary -O../r-base_4.2.2.20221110-2_armhf.buildinfo dpkg-genchanges --build=binary -O../r-base_4.2.2.20221110-2_armhf.changes @@ -22574,12 +22610,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/11069/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/11069/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/14401 and its subdirectories -I: Current time: Mon Jan 15 06:07:30 -12 2024 -I: pbuilder-time-stamp: 1705342050 +I: removing directory /srv/workspace/pbuilder/11069 and its subdirectories +I: Current time: Tue Jan 16 10:44:04 +14 2024 +I: pbuilder-time-stamp: 1705351444