Diff of the two buildlogs: -- --- b1/build.log 2024-07-10 17:57:10.438117908 +0000 +++ b2/build.log 2024-07-10 18:03:06.610996083 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Aug 12 12:16:08 -12 2025 -I: pbuilder-time-stamp: 1755044168 +I: Current time: Thu Jul 11 07:57:14 +14 2024 +I: pbuilder-time-stamp: 1720634234 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./beast2-mcmc_2.6.3+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.yKuhqBl6/trustedkeys.kbx': General error -gpgv: Signature made Sat Oct 3 06:52:00 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.xksCTTBj/trustedkeys.kbx': General error +gpgv: Signature made Sun Oct 4 08:52:00 2020 +14 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./beast2-mcmc_2.6.3+dfsg-2.dsc @@ -37,135 +37,166 @@ dpkg-source: info: applying handling_minor_issues_in_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4160893/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1209441/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 11 07:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1209441/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1209441/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=42 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=20 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='9bd53601b5694d05a55c8b87dbc5554d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4160893' - PS1='# ' - PS2='> ' + INVOCATION_ID=1f6888ad93964d339c84e851bfccfd9f + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1209441 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9ZIX8P3G/pbuilderrc_VpJV --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9ZIX8P3G/b1 --logfile b1/build.log beast2-mcmc_2.6.3+dfsg-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9ZIX8P3G/pbuilderrc_eDca --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9ZIX8P3G/b2 --logfile b2/build.log beast2-mcmc_2.6.3+dfsg-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-22-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.94-1 (2024-06-21) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Mar 27 2024 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Mar 27 2024 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Mar 27 2024 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Mar 27 2024 more - -rwsr-xr-x 1 root root 55528 Mar 27 2024 mount - -rwxr-xr-x 1 root root 18664 Mar 27 2024 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 9 03:46 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Mar 27 2024 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Jan 19 2024 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Mar 27 2024 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Mar 27 2024 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/4160893/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Mar 29 00:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Mar 29 00:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Mar 29 00:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Mar 29 00:09 more + -rwsr-xr-x 1 root root 55528 Mar 29 00:09 mount + -rwxr-xr-x 1 root root 18664 Mar 29 00:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Jul 11 07:57 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Mar 29 00:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Jan 20 23:59 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Mar 29 00:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Mar 29 00:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1209441/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -454,7 +485,7 @@ Get: 227 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 228 http://deb.debian.org/debian bullseye/main amd64 texlive-pictures all 2020.20210202-3 [6743 kB] Get: 229 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-extra all 2020.20210202-3 [13.7 MB] -Fetched 297 MB in 10s (30.2 MB/s) +Fetched 297 MB in 5s (57.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) @@ -1425,135 +1456,135 @@ Setting up javahelper (0.78) ... Setting up ca-certificates-java (20190909+deb11u1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory -Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem -Adding debian:Entrust_Root_Certification_Authority.pem +Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem -Adding debian:Amazon_Root_CA_2.pem -Adding debian:Actalis_Authentication_Root_CA.pem -Adding debian:AffirmTrust_Networking.pem -Adding debian:Buypass_Class_2_Root_CA.pem -Adding debian:DigiCert_Global_Root_G3.pem -Adding debian:QuoVadis_Root_CA.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem -Adding debian:GlobalSign_Root_CA_-_R6.pem -Adding debian:Izenpe.com.pem -Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem -Adding debian:Hongkong_Post_Root_CA_1.pem -Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem -Adding debian:SSL.com_Root_Certification_Authority_ECC.pem -Adding debian:TrustCor_ECA-1.pem -Adding debian:Secure_Global_CA.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:USERTrust_ECC_Certification_Authority.pem -Adding debian:SwissSign_Silver_CA_-_G2.pem -Adding debian:emSign_Root_CA_-_G1.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem +Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:GTS_Root_R1.pem -Adding debian:DST_Root_CA_X3.pem -Adding debian:Amazon_Root_CA_3.pem -Adding debian:GTS_Root_R2.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem -Adding debian:Comodo_AAA_Services_root.pem -Adding debian:QuoVadis_Root_CA_3.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem +Adding debian:emSign_Root_CA_-_C1.pem +Adding debian:Security_Communication_RootCA2.pem +Adding debian:Hongkong_Post_Root_CA_3.pem +Adding debian:Amazon_Root_CA_4.pem +Adding debian:certSIGN_ROOT_CA.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem +Adding debian:GlobalSign_Root_CA_-_R6.pem +Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:ePKI_Root_Certification_Authority.pem -Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem -Adding debian:USERTrust_RSA_Certification_Authority.pem +Adding debian:Entrust_Root_Certification_Authority.pem +Adding debian:QuoVadis_Root_CA.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem -Adding debian:AffirmTrust_Commercial.pem -Adding debian:UCA_Global_G2_Root.pem -Adding debian:Certigna_Root_CA.pem -Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem -Adding debian:GDCA_TrustAUTH_R5_ROOT.pem -Adding debian:GTS_Root_R3.pem -Adding debian:Global_Chambersign_Root_-_2008.pem -Adding debian:Starfield_Class_2_CA.pem -Adding debian:TrustCor_RootCert_CA-2.pem +Adding debian:ACCVRAIZ1.pem +Adding debian:COMODO_Certification_Authority.pem +Adding debian:Hongkong_Post_Root_CA_1.pem +Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:Amazon_Root_CA_2.pem Adding debian:Certum_Trusted_Network_CA_2.pem -Adding debian:QuoVadis_Root_CA_2_G3.pem -Adding debian:certSIGN_ROOT_CA.pem -Adding debian:NAVER_Global_Root_Certification_Authority.pem -Adding debian:UCA_Extended_Validation_Root.pem -Adding debian:Entrust_Root_Certification_Authority_-_G4.pem -Adding debian:SwissSign_Gold_CA_-_G2.pem -Adding debian:Cybertrust_Global_Root.pem -Adding debian:Entrust_Root_Certification_Authority_-_G2.pem +Adding debian:TrustCor_RootCert_CA-2.pem +Adding debian:QuoVadis_Root_CA_3.pem +Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem +Adding debian:GlobalSign_Root_CA_-_R2.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Certigna.pem +Adding debian:Secure_Global_CA.pem +Adding debian:Buypass_Class_2_Root_CA.pem +Adding debian:Sonera_Class_2_Root_CA.pem +Adding debian:Amazon_Root_CA_3.pem +Adding debian:Security_Communication_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem -Adding debian:T-TeleSec_GlobalRoot_Class_2.pem -Adding debian:GlobalSign_Root_CA_-_R3.pem -Adding debian:GlobalSign_Root_CA.pem +Adding debian:QuoVadis_Root_CA_2_G3.pem +Adding debian:COMODO_ECC_Certification_Authority.pem +Adding debian:Trustwave_Global_Certification_Authority.pem +Adding debian:IdenTrust_Commercial_Root_CA_1.pem +Adding debian:TWCA_Root_Certification_Authority.pem +Adding debian:AffirmTrust_Commercial.pem +Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem +Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:Entrust_Root_Certification_Authority_-_G4.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem +Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:SZAFIR_ROOT_CA2.pem +Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem +Adding debian:GTS_Root_R3.pem +Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:CFCA_EV_ROOT.pem -Adding debian:SecureTrust_CA.pem Adding debian:COMODO_RSA_Certification_Authority.pem -Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem -Adding debian:AC_RAIZ_FNMT-RCM.pem -Adding debian:Security_Communication_Root_CA.pem -Adding debian:QuoVadis_Root_CA_1_G3.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem -Adding debian:ACCVRAIZ1.pem -Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem -Adding debian:COMODO_Certification_Authority.pem -Adding debian:ISRG_Root_X1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem -Adding debian:AffirmTrust_Premium.pem -Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem -Adding debian:SZAFIR_ROOT_CA2.pem -Adding debian:EC-ACC.pem -Adding debian:emSign_Root_CA_-_C1.pem -Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem -Adding debian:QuoVadis_Root_CA_2.pem -Adding debian:AffirmTrust_Premium_ECC.pem +Adding debian:Cybertrust_Global_Root.pem +Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:Go_Daddy_Class_2_CA.pem -Adding debian:Network_Solutions_Certificate_Authority.pem -Adding debian:Hongkong_Post_Root_CA_3.pem -Adding debian:E-Tugra_Certification_Authority.pem -Adding debian:SecureSign_RootCA11.pem -Adding debian:Trustis_FPS_Root_CA.pem -Adding debian:Amazon_Root_CA_1.pem +Adding debian:QuoVadis_Root_CA_2.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:Baltimore_CyberTrust_Root.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem -Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem -Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem +Adding debian:ISRG_Root_X1.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem -Adding debian:T-TeleSec_GlobalRoot_Class_3.pem -Adding debian:Security_Communication_RootCA2.pem -Adding debian:TWCA_Global_Root_CA.pem +Adding debian:AC_RAIZ_FNMT-RCM.pem +Adding debian:SwissSign_Silver_CA_-_G2.pem +Adding debian:SecureSign_RootCA11.pem +Adding debian:Entrust_Root_Certification_Authority_-_G2.pem +Adding debian:GlobalSign_Root_CA.pem +Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:Izenpe.com.pem +Adding debian:Comodo_AAA_Services_root.pem +Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:CA_Disig_Root_R2.pem -Adding debian:TWCA_Root_Certification_Authority.pem -Adding debian:Certum_Trusted_Network_CA.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem +Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem +Adding debian:NAVER_Global_Root_Certification_Authority.pem +Adding debian:EC-ACC.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem +Adding debian:DST_Root_CA_X3.pem +Adding debian:GTS_Root_R2.pem +Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem +Adding debian:UCA_Global_G2_Root.pem +Adding debian:AffirmTrust_Premium_ECC.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem +Adding debian:Actalis_Authentication_Root_CA.pem +Adding debian:emSign_Root_CA_-_G1.pem +Adding debian:UCA_Extended_Validation_Root.pem +Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem +Adding debian:Amazon_Root_CA_1.pem +Adding debian:DigiCert_Global_Root_G3.pem +Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:E-Tugra_Certification_Authority.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:Certigna_Root_CA.pem +Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem +Adding debian:GlobalSign_Root_CA_-_R3.pem +Adding debian:Certum_Trusted_Network_CA.pem Adding debian:DigiCert_Global_Root_CA.pem -Adding debian:QuoVadis_Root_CA_3_G3.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem -Adding debian:COMODO_ECC_Certification_Authority.pem -Adding debian:SSL.com_Root_Certification_Authority_RSA.pem -Adding debian:e-Szigno_Root_CA_2017.pem -Adding debian:GlobalSign_Root_CA_-_R2.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem +Adding debian:SSL.com_Root_Certification_Authority_ECC.pem +Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem +Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem +Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem +Adding debian:GTS_Root_R4.pem +Adding debian:AffirmTrust_Premium.pem +Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:Starfield_Class_2_CA.pem +Adding debian:e-Szigno_Root_CA_2017.pem +Adding debian:SecureTrust_CA.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem +Adding debian:XRamp_Global_CA_Root.pem +Adding debian:AffirmTrust_Networking.pem +Adding debian:T-TeleSec_GlobalRoot_Class_2.pem +Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:certSIGN_Root_CA_G2.pem -Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem +Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem +Adding debian:USERTrust_RSA_Certification_Authority.pem +Adding debian:TWCA_Global_Root_CA.pem +Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem +Adding debian:SSL.com_Root_Certification_Authority_RSA.pem +Adding debian:TrustCor_ECA-1.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Atos_TrustedRoot_2011.pem -Adding debian:IdenTrust_Commercial_Root_CA_1.pem -Adding debian:Amazon_Root_CA_4.pem -Adding debian:Sonera_Class_2_Root_CA.pem -Adding debian:Trustwave_Global_Certification_Authority.pem -Adding debian:XRamp_Global_CA_Root.pem +Adding debian:TrustCor_RootCert_CA-1.pem +Adding debian:Trustis_FPS_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem -Adding debian:Microsec_e-Szigno_Root_CA_2009.pem -Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem -Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem -Adding debian:TrustCor_RootCert_CA-1.pem -Adding debian:DigiCert_Assured_ID_Root_G2.pem -Adding debian:DigiCert_Trusted_Root_G4.pem -Adding debian:GTS_Root_R4.pem -Adding debian:emSign_ECC_Root_CA_-_C3.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem -Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem +Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem done. Setting up junit4 (4.13.1-2) ... Setting up default-jdk (2:1.11-72) ... @@ -1581,7 +1612,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/beast2-mcmc-2.6.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../beast2-mcmc_2.6.3+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1209441/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/1209441/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/beast2-mcmc-2.6.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../beast2-mcmc_2.6.3+dfsg-2_source.changes dpkg-buildpackage: info: source package beast2-mcmc dpkg-buildpackage: info: source version 2.6.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1645,37 +1680,37 @@ junit: [mkdir] Created dir: /build/reproducible-path/beast2-mcmc-2.6.3+dfsg/build/junitreport [junit] Running test.beast.app.BeautiSubTemplateTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.415 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.55 sec [junit] Running test.beast.app.BeautiTest - [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.893 sec + [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.486 sec [junit] Running test.beast.app.tools.LogCombinerTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.016 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.08 sec [junit] Running test.beast.core.BEASTInterfaceTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.609 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.222 sec [junit] Running test.beast.core.InputForAnnotatedConstructorTest - [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.383 sec + [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.715 sec [junit] Running test.beast.core.InputTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.093 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.207 sec [junit] Running test.beast.core.LoggerTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.221 sec [junit] Running test.beast.core.OperatorScheduleTest - [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.135 sec + [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.21 sec [junit] Running test.beast.core.StateNodeInitialiserTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.26 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.544 sec [junit] Running test.beast.core.parameter.BooleanParameterListTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.102 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.216 sec [junit] Running test.beast.core.parameter.IntegerParameterListTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.101 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.389 sec [junit] Running test.beast.core.parameter.ParameterTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.105 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.309 sec [junit] Running test.beast.core.parameter.RealParameterListTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.113 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.281 sec [junit] Running test.beast.core.util.SumTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.104 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.223 sec [junit] Running test.beast.evolution.alignment.FilteredAlignmentTest - [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.219 sec + [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.483 sec [junit] Running test.beast.evolution.alignment.UncertainAlignmentTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.188 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.424 sec [junit] Running test.beast.evolution.alignment.UnorderedAlignmentsTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) @@ -1685,9 +1720,9 @@ [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.evolution.alignment.UnorderedAlignmentsTest FAILED (crashed) [junit] Running test.beast.evolution.datatype.DataTypeDeEncodeTest - [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.092 sec + [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.179 sec [junit] Running test.beast.evolution.datatype.IntegerDataTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.089 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.17 sec [junit] Running test.beast.evolution.likelihood.TreeLikelihoodTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) @@ -1697,49 +1732,49 @@ [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.evolution.likelihood.TreeLikelihoodTest FAILED (crashed) [junit] Running test.beast.evolution.operator.CompoundParameterHelperTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.095 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.188 sec [junit] Running test.beast.evolution.operator.DeltaExchangeOperatorTest - [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.105 sec + [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.392 sec [junit] Running test.beast.evolution.operator.ExchangeOperatorTest - [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.515 sec + [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.989 sec [junit] Running test.beast.evolution.operator.IntRandomWalkOperatorTest - [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.731 sec + [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.797 sec [junit] Running test.beast.evolution.operator.ScaleOperatorTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.151 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.272 sec [junit] Running test.beast.evolution.operator.UniformIntegerOperatorTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.104 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.191 sec [junit] Running test.beast.evolution.operator.WilsonBaldingTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.344 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.262 sec [junit] Running test.beast.evolution.speciation.BirthDeathGernhard08ModelTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.25 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.533 sec [junit] Running test.beast.evolution.speciation.YuleModelTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.157 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.295 sec [junit] Running test.beast.evolution.substmodel.BinaryCovarionModelTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.137 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.271 sec [junit] Running test.beast.evolution.substmodel.GTRTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.114 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.24 sec [junit] Running test.beast.evolution.substmodel.GeneralSubstitutionModelTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.101 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.187 sec [junit] Running test.beast.evolution.substmodel.HKYTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.107 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.211 sec [junit] Running test.beast.evolution.tree.NodeTest - [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.317 sec + [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.297 sec [junit] Running test.beast.evolution.tree.RandomTreeTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 11.187 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 18.634 sec [junit] Running test.beast.evolution.tree.TraitSetTest - [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.178 sec + [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.365 sec [junit] Running test.beast.evolution.tree.TreeAnnotatorTest - [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.195 sec + [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.393 sec [junit] Running test.beast.evolution.tree.TreeTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.169 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.263 sec [junit] Running test.beast.evolution.tree.TreeUtilsTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.151 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.315 sec [junit] Running test.beast.evolution.tree.coalescent.BayesianSkylineTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.155 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.283 sec [junit] Running test.beast.evolution.tree.coalescent.CoalescentTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.25 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.537 sec [junit] Running test.beast.integration.DocumentationTest - [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.515 sec + [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.964 sec [junit] Running test.beast.integration.ExampleJSONParsingTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) @@ -1757,7 +1792,7 @@ [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.integration.ExampleXmlParsingTest FAILED (crashed) [junit] Running test.beast.integration.InputTypeTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.622 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.949 sec [junit] Running test.beast.integration.ResumeTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) @@ -1767,27 +1802,27 @@ [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.integration.ResumeTest FAILED (crashed) [junit] Running test.beast.integration.XMLElementNameTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.907 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.902 sec [junit] Running test.beast.integration.XMLProducerTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.931 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.754 sec [junit] Running test.beast.math.distributions.GammaTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.888 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.611 sec [junit] Running test.beast.math.distributions.InvGammaTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.101 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.177 sec [junit] Running test.beast.math.distributions.LaplaceDistributionTest - [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.161 sec + [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.374 sec [junit] Running test.beast.math.distributions.LogNormalDistributionModelTest - [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.807 sec + [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.681 sec [junit] Running test.beast.math.distributions.MRCAPriorTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.261 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.518 sec [junit] Running test.beast.math.distributions.MeanOfParametricDistributionTest - [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.643 sec + [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.118 sec [junit] Running test.beast.math.distributions.NormalDistributionTest - [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.561 sec + [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.426 sec [junit] Running test.beast.statistic.RPNCalculatorTest - [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.744 sec + [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.231 sec [junit] Running test.beast.util.ClusterTreeTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.222 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.489 sec [junit] Running test.beast.util.JSONTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) @@ -1797,15 +1832,15 @@ [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.util.JSONTest FAILED (crashed) [junit] Running test.beast.util.NexusParserTest - [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.73 sec + [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.091 sec [junit] Running test.beast.util.RandomizerTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.381 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.683 sec [junit] Running test.beast.util.TreeParserTest - [junit] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.183 sec + [junit] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.031 sec [junit] Running test.beast.util.XMLParserTest - [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.307 sec + [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.617 sec [junit] Running test.beast.util.XMLTest - [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.579 sec + [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.227 sec [echo] JUnit test finished. dist_all_BEAST: @@ -1823,7 +1858,7 @@ build_jar_all_BEAST: BUILD SUCCESSFUL -Total time: 1 minute 25 seconds +Total time: 2 minutes 22 seconds mv debian/fest_swing_tests src/test/beast/app/beauti make[1]: Leaving directory '/build/reproducible-path/beast2-mcmc-2.6.3+dfsg' dh_auto_test @@ -1851,9 +1886,9 @@ dh_missing dh_installdeb dh_gencontrol -dpkg-gencontrol: warning: Depends field of package beast2-mcmc-examples: substitution variable ${shlibs:Depends} used, but is not defined -dpkg-gencontrol: warning: Depends field of package beast2-mcmc-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package beast2-mcmc: substitution variable ${shlibs:Depends} used, but is not defined +dpkg-gencontrol: warning: Depends field of package beast2-mcmc-doc: substitution variable ${shlibs:Depends} used, but is not defined +dpkg-gencontrol: warning: Depends field of package beast2-mcmc-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'beast2-mcmc' in '../beast2-mcmc_2.6.3+dfsg-2_all.deb'. @@ -1866,12 +1901,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1209441/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1209441/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4160893 and its subdirectories -I: Current time: Tue Aug 12 12:20:09 -12 2025 -I: pbuilder-time-stamp: 1755044409 +I: removing directory /srv/workspace/pbuilder/1209441 and its subdirectories +I: Current time: Thu Jul 11 08:03:05 +14 2024 +I: pbuilder-time-stamp: 1720634585