Diff of the two buildlogs: -- --- b1/build.log 2023-04-30 10:24:25.411135427 +0000 +++ b2/build.log 2023-04-30 10:28:06.157404361 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jun 1 04:42:25 -12 2024 -I: pbuilder-time-stamp: 1717260145 +I: Current time: Mon May 1 00:24:27 +14 2023 +I: pbuilder-time-stamp: 1682850267 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./cwltool_3.0.20210124104916-3+deb11u1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.mM1h8nax/trustedkeys.kbx': General error -gpgv: Signature made Fri Dec 2 06:19:48 2022 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.p2AgKred/trustedkeys.kbx': General error +gpgv: Signature made Sat Dec 3 08:19:48 2022 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cwltool_3.0.20210124104916-3+deb11u1.dsc @@ -33,135 +33,166 @@ dpkg-source: info: applying add_interps I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1439249/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2039865/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 1 00:24 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2039865/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2039865/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1f3fa406784a45deaf5778cd964fe173' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1439249' - PS1='# ' - PS2='> ' + INVOCATION_ID=0ac5b05258684a33aec6048221e60241 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2039865 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.r1dI4PgR/pbuilderrc_fi6z --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.r1dI4PgR/b1 --logfile b1/build.log cwltool_3.0.20210124104916-3+deb11u1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.r1dI4PgR/pbuilderrc_Ptst --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.r1dI4PgR/b2 --logfile b2/build.log cwltool_3.0.20210124104916-3+deb11u1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jan 20 2022 more - -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount - -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 May 23 03:55 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jan 20 2022 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1439249/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jan 21 2022 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 22:23 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 22:23 fgrep + -rwxr-xr-x 1 root root 69032 Jan 21 2022 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 22:23 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jan 21 2022 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jan 21 2022 more + -rwsr-xr-x 1 root root 55528 Jan 21 2022 mount + -rwxr-xr-x 1 root root 18664 Jan 21 2022 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 May 1 00:24 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jan 21 2022 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jan 21 2022 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jan 21 2022 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/2039865/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -422,7 +453,7 @@ Get: 169 http://deb.debian.org/debian bullseye/main amd64 python3-schema-salad all 7.0.20210124093443-1 [302 kB] Get: 170 http://deb.debian.org/debian bullseye/main amd64 python3-shellescape all 3.4.1-4 [4884 B] Get: 171 http://deb.debian.org/debian bullseye/main amd64 python3-sparqlwrapper all 1.8.5-1 [35.2 kB] -Fetched 54.9 MB in 2s (32.5 MB/s) +Fetched 54.9 MB in 3s (19.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19707 files and directories currently installed.) @@ -1137,7 +1168,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/cwltool-3.0.20210124104916/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cwltool_3.0.20210124104916-3+deb11u1_source.changes +I: user script /srv/workspace/pbuilder/2039865/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/2039865/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/cwltool-3.0.20210124104916/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cwltool_3.0.20210124104916-3+deb11u1_source.changes dpkg-buildpackage: info: source package cwltool dpkg-buildpackage: info: source version 3.0.20210124104916-3+deb11u1 dpkg-buildpackage: info: source distribution bullseye @@ -2652,40 +2687,34 @@ cd {build_dir}; export PYTHONPATH=$(pwd); {interpreter} -m pytest \ -k 'not test_http_path_mapping and not test_pack and not test_get_subgraph and not test_use_metadata and not test_load_graph_fragment_from_packed and not test_udocker_usage_should_not_write_cid_file and not test_udocker_should_display_memory_usage' \ -n auto --dist=loadfile --ignore cwltool/schemas/ -s --pyargs cwltool" dh_auto_test -I: pybuild base:232: cd /build/cwltool-3.0.20210124104916; export PATH=/build/cwltool-3.0.20210124104916/debian/python3-cwltool/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games ; cd /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build; export PYTHONPATH=/build/cwltool-3.0.20210124104916; python3.9 -m pytest -k 'not test_http_path_mapping and not test_pack and not test_get_subgraph and not test_use_metadata and not test_load_graph_fragment_from_packed and not test_udocker_usage_should_not_write_cid_file and not test_udocker_should_display_memory_usage' -n auto --dist=loadfile --ignore cwltool/schemas/ -s --pyargs cwltool +I: pybuild base:232: cd /build/cwltool-3.0.20210124104916; export PATH=/build/cwltool-3.0.20210124104916/debian/python3-cwltool/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path ; cd /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build; export PYTHONPATH=/build/cwltool-3.0.20210124104916; python3.9 -m pytest -k 'not test_http_path_mapping and not test_pack and not test_get_subgraph and not test_use_metadata and not test_load_graph_fragment_from_packed and not test_udocker_usage_should_not_write_cid_file and not test_udocker_should_display_memory_usage' -n auto --dist=loadfile --ignore cwltool/schemas/ -s --pyargs cwltool Resolved 'foo.cwl' to 'baz:bar/foo.cwl' +Resolved '/build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' +URI prefix 'baz' of 'baz:bar/foo.cwl' not recognized, are you missing a $namespaces section? +Resolved '/build/cwltool-3.0.20210124104916/tests/echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/echo.cwl' +Resolved '/build/cwltool-3.0.20210124104916/tests/wf/default_path.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/default_path.cwl' +Resolved '/build/cwltool-3.0.20210124104916/tests/wf/count-lines1-wf.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/count-lines1-wf.cwl' +INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' +INFO 3.0.20210124104916 +INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/no-parameters-echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/no-parameters-echo.cwl' ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/cwltool-3.0.20210124104916, configfile: setup.cfg plugins: xdist-2.2.0, mock-1.10.4, forked-1.3.0 -gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I / gw15 I -gw0 [418] / gw1 [418] / gw2 [418] / gw3 [418] / gw4 [418] / gw5 [418] / gw6 [418] / gw7 [418] / gw8 [418] / gw9 [418] / gw10 [418] / gw11 [418] / gw12 [418] / gw13 [418] / gw14 [418] / gw15 [418] +gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I +gw0 [418] / gw1 [418] / gw2 [418] / gw3 [418] / gw4 [418] / gw5 [418] / gw6 [418] / gw7 [418] / gw8 [418] / gw9 [418] / gw10 [418] / gw11 [418] / gw12 [418] / gw13 [418] / gw14 [418] -sResolved '/build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' -sURI prefix 'baz' of 'baz:bar/foo.cwl' not recognized, are you missing a $namespaces section? -Resolved '/build/cwltool-3.0.20210124104916/tests/echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/echo.cwl' -Resolved '/build/cwltool-3.0.20210124104916/tests/wf/default_path.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/default_path.cwl' -Resolved '/build/cwltool-3.0.20210124104916/tests/wf/vf-concat.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/vf-concat.cwl' -INFO 3.0.20210124104916 -sINFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' -..sssssss.s....ssINFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/hello_single_tool.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/hello_single_tool.cwl' -INFO 3.0.20210124104916 -ssINFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/no-parameters-echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/no-parameters-echo.cwl' -ssssssss........sss....INFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/missing_cwlVersion.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/missing_cwlVersion.cwl' -ss...........................INFO 3.0.20210124104916 -.INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' -.......s..INFO 3.0.20210124104916 -...INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/timelimit.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/timelimit.cwl' -ERROR Tool definition failed validation: +s.ssINFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/missing_cwlVersion.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/missing_cwlVersion.cwl' +sss......s...ssINFO 3.0.20210124104916 +sssssss......INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/timelimit.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/timelimit.cwl' +........sERROR Tool definition failed validation: No cwlVersion found. Use the following syntax in your CWL document to declare the version: cwlVersion: . Note: if this is a CWL draft-2 (pre v1.0) document then it will need to be upgraded first. -s.....INFO 3.0.20210124104916 -....INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/generator/zing.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/generator/zing.cwl' -.INFO 3.0.20210124104916 -.INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/wrong_cwlVersion.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/wrong_cwlVersion.cwl' -...ERROR Tool definition failed validation: +ssssss....INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/wrong_cwlVersion.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/wrong_cwlVersion.cwl' +........ERROR Tool definition failed validation: The CWL reference runner no longer supports pre CWL v1.0 documents. Supported versions are: v1.0 v1.1 @@ -2696,85 +2725,101 @@ v1.2.0-dev3 (with --enable-dev flag only) v1.2.0-dev4 (with --enable-dev flag only) v1.2.0-dev5 (with --enable-dev flag only) -...s....ssssssssssssINFO 3.0.20210124104916 +...........INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/generator/zing.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/generator/zing.cwl' +s.........ss..................sss........ssssssINFO 3.0.20210124104916 INFO Resolved 'quay.io/briandoconnor/dockstore-tool-md5sum:1.0.4' to 'https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/plain-CWL/descriptor/Dockstore.cwl' -.........................................................................................Resolved '/build/cwltool-3.0.20210124104916/tests/echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/echo.cwl' -INFO [job no-parameters-echo.cwl] /tmp/t4ymn4f8$ echo > /tmp/t4ymn4f8/35f1dfe96668455c7eca33db5806493ab218311b -INFO [job no-parameters-echo.cwl] completed success -INFO Final process status is success -.[job iwdr-entry.cwl] /tmp/tazr9k_w$ cat \ +INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script' to 'file:///build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script' +.........................[job iwdr-entry.cwl] /tmp/xpoxib86$ cat \ example.conf -[job echo.cwl] /tmp/b_o5i7kj$ echo \ - foo > /tmp/b_o5i7kj/out.txt -Resolved '/build/cwltool-3.0.20210124104916/tests/wf/default_path.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/default_path.cwl' .CONFIGVAR=hello -../../../tests/wf/default_path.cwl:9:7: Warning: Field `path` contains undefined reference to - `file:///build/cwltool-3.0.20210124104916/tests/wf/default.txt` [job iwdr-entry.cwl] completed success -.[job echo.cwl] completed success -..sss..../../../tests/wf/default_path.cwl:9:7: Warning: Field `path` contains undefined reference to - `file:///build/cwltool-3.0.20210124104916/tests/wf/default.txt` -sss..Resolved '/build/cwltool-3.0.20210124104916/tests/wf/count-lines1-wf.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/count-lines1-wf.cwl' -ERROR Workflow or tool uses unsupported feature: -Docker is required to run this tool: docker executable is not available -.ss.ERROR Workflow or tool uses unsupported feature: -Singularity is required to run this tool: singularity executable is not available -INFO 3.0.20210124104916 -.sINFO Resolved '#workflow/github.com/dockstore-testing/md5sum-checker:develop' to 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-workflow.cwl' -ssINFO [job timelimit.cwl] /tmp/bexr40yj$ sleep \ - 3 -INFO /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__main__.py 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/tests/utf_doc_example.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/utf_doc_example.cwl' -URI prefix 'baz' of 'baz:bar/foo.cwl' not recognized, are you missing a $namespaces section? +..ssssss....URI prefix 'baz' of 'baz:bar/foo.cwl' not recognized, are you missing a $namespaces section? URI prefix 'baz' of 'baz:bar/foo.cwl#bar/foo.cwl' not recognized, are you missing a $namespaces section? URI prefix 'baz' of 'baz:bar/foo.cwl' not recognized, are you missing a $namespaces section? URI prefix 'baz' of 'baz:bar/foo.cwl#bar/foo.cwl' not recognized, are you missing a $namespaces section? -..Resolved '/build/cwltool-3.0.20210124104916/tests/echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/echo.cwl' -INFO 3.0.20210124104916 -INFO Resolved 'foo.cwl' to 'baz:bar/foo.cwl' +...INFO 3.0.20210124104916 +.INFO Resolved 'foo.cwl' to 'baz:bar/foo.cwl' URI prefix 'baz' of 'baz:bar/foo.cwl' not recognized, are you missing a $namespaces section? -Resolved '/build/cwltool-3.0.20210124104916/tests/echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/echo.cwl' -.Resolved '/build/cwltool-3.0.20210124104916/tests/wf/1st-workflow.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/1st-workflow.cwl' -..s[workflow ] starting step step1 -[step step1] start -[workflow ] start -[job step1] /tmp/_wgd5b76$ wc \ - -l < /tmp/1xmv__h1/stg0a9a55a4-5799-402b-a869-1b8574fc2ac6/whale.txt > /tmp/_wgd5b76/output -...[job step1] completed success -[step step1] completed success -[workflow ] starting step step2 -[step step2] start -ERROR Tool definition failed validation: -../../../tests/wf/generator/pytoolgen.cwl:5:1: Field `class` contains undefined reference to - `file:///build/cwltool-3.0.20210124104916/tests/wf/generator/ProcessGenerator` +INFO [job no-parameters-echo.cwl] /tmp/c2nvfue5$ echo > /tmp/c2nvfue5/35f1dfe96668455c7eca33db5806493ab218311b +....Resolved '/build/cwltool-3.0.20210124104916/tests/wf/vf-concat.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/vf-concat.cwl' +[job echo.cwl] /tmp/u7nu_sdf$ echo \ + foo > /tmp/u7nu_sdf/out.txt +.INFO [job no-parameters-echo.cwl] completed success +....INFO Final process status is success +..[job echo.cwl] completed success +.Resolved '/build/cwltool-3.0.20210124104916/tests/echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/echo.cwl' +INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/hello_single_tool.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/hello_single_tool.cwl' +..Resolved '/build/cwltool-3.0.20210124104916/tests/echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/echo.cwl' +.ERROR Tool definition failed validation: ../../../tests/wf/generator/pytoolgen.cwl:10:1: checking field `requirements` ../../../tests/wf/generator/pytoolgen.cwl:22:5: checking item Field `class` contains undefined reference to `http://commonwl.org/cwltool#LoadListingRequirement` +../../../tests/wf/generator/pytoolgen.cwl:5:1: Field `class` contains undefined reference to + `file:///build/cwltool-3.0.20210124104916/tests/wf/generator/ProcessGenerator` ../../../tests/wf/generator/pytoolgen.cwl:10:1: checking object - `../../../tests/wf/generator/pytoolgen.cwl#e8114b50-1b37-4466-9459-cea89953e9d1` + `../../../tests/wf/generator/pytoolgen.cwl#36ff85d2-9904-4a2a-9cbe-0a9683e1da3e` ../../../tests/wf/generator/pytoolgen.cwl:20:3: checking field `requirements` ../../../tests/wf/generator/pytoolgen.cwl:22:5: checking item Field `class` contains undefined reference to `http://commonwl.org/cwltool#LoadListingRequirement` +.../../../tests/wf/default_path.cwl:9:7: Warning: Field `path` contains undefined reference to + `file:///build/cwltool-3.0.20210124104916/tests/wf/default.txt` INFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/generator/zing.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/generator/zing.cwl' Resolved '/build/cwltool-3.0.20210124104916/tests/wf/1st-workflow.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/1st-workflow.cwl' -[job vf-concat.cwl] /tmp/n7hjx9i8$ echo \ - 'a string' > /tmp/n7hjx9i8/output.txt -.[job vf-concat.cwl] completed success -.[job echo.cwl] /tmp/d10qidic$ echo \ - foo > /tmp/d10qidic/out.txt +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/generator/zing.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/generator/zing.cwl' +..ssERROR Workflow or tool uses unsupported feature: +Docker is required to run this tool: docker executable is not available +sssssss.ssssss.........................................Resolved '/build/cwltool-3.0.20210124104916/tests/wf/1st-workflow.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/1st-workflow.cwl' +..INFO [job timelimit.cwl] /tmp/2rrfj480$ sleep \ + 3 +......sResolved '/build/cwltool-3.0.20210124104916/tests/echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/echo.cwl' +.....INFO 3.0.20210124104916 +INFO Resolved '#workflow/github.com/dockstore-testing/md5sum-checker:develop' to 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-workflow.cwl' +.DEBUG Parsed job order from command line: { + "id": "/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script", + "input": { + "class": "File", + "location": "file:///build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script" + } +} +INFO Final process status is success +INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script' to 'file:///build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script' +[workflow ] starting step step1 +[step step1] start +[workflow ] start +[job step1] /tmp/p7yfr3mu$ wc \ + -l < /tmp/vmxjtus2/stg42b5f651-ba35-4f59-9047-0f13482987a6/whale.txt > /tmp/p7yfr3mu/output +[job step1] completed success +[step step1] completed success +[workflow ] starting step step2 +[step step2] start +[job vf-concat.cwl] /tmp/tyff4t4u$ echo \ + 'a string' > /tmp/tyff4t4u/output.txt +[job vf-concat.cwl] completed success +.[step step2] completed success +[workflow ] completed success +.Resolved '/build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' +.URI prefix 'baz' of 'baz:bar/foo.cwl' not recognized, are you missing a $namespaces section? +URI prefix 'baz' of 'baz:bar/foo.cwl#bar/foo.cwl' not recognized, are you missing a $namespaces section? +URI prefix 'baz' of 'baz:bar/foo.cwl' not recognized, are you missing a $namespaces section? +URI prefix 'baz' of 'baz:bar/foo.cwl#bar/foo.cwl' not recognized, are you missing a $namespaces section? +......[job echo.cwl] /tmp/6hwpmh0y$ echo \ + foo > /tmp/6hwpmh0y/out.txt [job echo.cwl] completed success .Resolved '/build/cwltool-3.0.20210124104916/tests/echo_broken_outputs.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/echo_broken_outputs.cwl' -Resolved '/build/cwltool-3.0.20210124104916/tests/wf/scatterfail.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatterfail.cwl' -...[workflow ] start +...Resolved '/build/cwltool-3.0.20210124104916/tests/wf/scatterfail.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatterfail.cwl' +[workflow ] start [workflow ] starting step step1 [step step1] start [workflow step1] start [workflow step1] starting step sstep1 [step sstep1] start -[job sstep1] /tmp/fee8r4pd$ python3 \ +[job sstep1] /tmp/09nypdcz$ python3 \ -c \ 'import sys print(sys.argv[1]) @@ -2788,16 +2833,13 @@ exit(1) ' \ 1 -[step step2] completed success -[workflow ] completed success -.1 -Resolved '/build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' +1 [job sstep1] completed success [step sstep1] completed success [workflow step1] starting step sstep2 [step sstep2] start -[job sstep2] /tmp/317feyn2$ cat \ - /tmp/5jwp7qfl/stg823d3cd4-982e-4f95-8d29-e0270508119f/foo1.txt +[job sstep2] /tmp/45rxox6f$ cat \ + /tmp/esllj2w9/stga9200c19-ff58-4ddf-88e2-36eb540b277d/foo1.txt 1 [job sstep2] completed success [step sstep2] completed success @@ -2806,7 +2848,7 @@ [workflow step1_2] start [workflow step1_2] starting step sstep1_2 [step sstep1_2] start -[job sstep1_2] /tmp/5uq61drv$ python3 \ +[job sstep1_2] /tmp/s5rhe9wn$ python3 \ -c \ 'import sys print(sys.argv[1]) @@ -2820,7 +2862,7 @@ exit(1) ' \ 2 -.ssss2 +2 [job sstep1_2] Job error: ("Error collecting output for parameter 'out':\n../../../tests/wf/echo.cwl:23:7: Did not find output file with glob pattern: '['foo2.txt']'", {}) [job sstep1_2] completed permanentFail @@ -2831,7 +2873,7 @@ [workflow step1_3] start [workflow step1_3] starting step sstep1_3 [step sstep1_3] start -[job sstep1_3] /tmp/8v0njcef$ python3 \ +.[job sstep1_3] /tmp/ya8a6fhx$ python3 \ -c \ 'import sys print(sys.argv[1]) @@ -2845,97 +2887,84 @@ exit(1) ' \ 3 -INFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script' to 'file:///build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script' -3 +.3 [job sstep1_3] completed success [step sstep1_3] completed success [workflow step1_3] starting step sstep2_3 [step sstep2_3] start -[job sstep2_2] /tmp/zveeangd$ cat \ - /tmp/y7gj7z9r/stgbcf1263a-fc82-4967-8a3d-28cc2ec011f7/foo3.txt +[job sstep2_2] /tmp/7hjne5qb$ cat \ + /tmp/pm53qmio/stg414fe5a8-0af3-4d37-8425-179bc77cf4da/foo3.txt 3 [job sstep2_2] completed success [step sstep2_3] completed success [workflow step1_3] completed success [step step1] completed permanentFail [workflow ] completed permanentFail -.Resolved '/build/cwltool-3.0.20210124104916/tests/wf/wffail.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/wffail.cwl' -....INFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' -....URI prefix 'baz' of 'baz:bar/foo.cwl' not recognized, are you missing a $namespaces section? -URI prefix 'baz' of 'baz:bar/foo.cwl#bar/foo.cwl' not recognized, are you missing a $namespaces section? -URI prefix 'baz' of 'baz:bar/foo.cwl' not recognized, are you missing a $namespaces section? -URI prefix 'baz' of 'baz:bar/foo.cwl#bar/foo.cwl' not recognized, are you missing a $namespaces section? -.......INFO [job timelimit.cwl] Max memory used: 0MiB -INFO [job timelimit.cwl] completed success -INFO Final process status is success -INFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/timelimit.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/timelimit.cwl' -INFO [job b6007858-4065-4380-87b9-013f8b768418] /tmp/m9xnysgg$ python3 \ - inp.py > /tmp/m9xnysgg/main.cwl -.INFO [job b6007858-4065-4380-87b9-013f8b768418] completed success -INFO [job main.cwl] /tmp/bgp5lmyz$ echo \ +Resolved '/build/cwltool-3.0.20210124104916/tests/wf/wffail.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/wffail.cwl' +.INFO [job 5d395287-e42e-47a8-a725-3b40b9a75a84] /tmp/hsilena3$ python3 \ + inp.py > /tmp/hsilena3/main.cwl +usage: /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script + [-h] --input INPUT [job_order] +/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script: error: the following arguments are required: --input +.INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script' to 'file:///build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script' +INFO [job 5d395287-e42e-47a8-a725-3b40b9a75a84] completed success +INFO /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__main__.py 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/utf_doc_example.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/utf_doc_example.cwl' +INFO [job main.cwl] /tmp/8sb4cne0$ echo \ zipper zipper INFO [job main.cwl] completed success INFO Final process status is success INFO 3.0.20210124104916 INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/generator/zing.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/generator/zing.cwl' -DEBUG Parsed job order from command line: { - "id": "/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script", - "input": { - "class": "File", - "location": "file:///build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script" - } -} +.INFO [job timelimit.cwl] Max memory used: 0MiB +INFO [job timelimit.cwl] completed success INFO Final process status is success -INFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script' to 'file:///build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script' -[workflow _2] starting step step1_2 -[step step1_2] start +....INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/timelimit.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/timelimit.cwl' +..[workflow _2] starting step step1_2 [workflow _2] start [step step1_2] start -[job step1_2] /tmp/w_r_t3rq$ echo \ +[job step1_2] /tmp/4xlbnyaq$ echo \ -n \ foo \ one \ - three > /tmp/w_r_t3rq/step1_out -[job step1_3] /tmp/e0zppaj4$ echo \ + three > /tmp/4xlbnyaq/step1_out +[step step1_2] start +[job step1_3] /tmp/rll1e1p0$ echo \ -n \ foo \ two \ - four > /tmp/e0zppaj4/step1_out + four > /tmp/rll1e1p0/step1_out [job step1_2] completed success [job step1_3] completed success [step step1_2] completed success [workflow _2] completed success -.[workflow _2] start -[workflow _2] starting step step2 -[step step2] start -[job step2] /tmp/xrzogv0t$ python3 \ - -c \ - 'import sys -print(sys.argv[1]) -if sys.argv[1] == "2": - exit(1) -else: - f = open("foo"+sys.argv[1]+".txt", "wb") - content = sys.argv[1]+"\n" - f.write(content.encode('"'"'utf-8'"'"')) -if sys.argv[1] == "5": - exit(1) -' \ - 2 -2 -[job step2] Job error: -("Error collecting output for parameter 'out':\n../../../tests/wf/echo.cwl:23:7: Did not find output file with glob pattern: '['foo2.txt']'", {}) -[job step2] completed permanentFail -[step step2] Output is missing expected field file:///build/cwltool-3.0.20210124104916/tests/wf/wffail.cwl#step2/out -[step step2] completed permanentFail +.Resolved '/build/cwltool-3.0.20210124104916/tests/wf/default_path.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/default_path.cwl' +../../../tests/wf/default_path.cwl:9:7: Warning: Field `path` contains undefined reference to + `file:///build/cwltool-3.0.20210124104916/tests/wf/default.txt` +.DEBUG Parsed job order from command line: { + "id": "/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw1/test_dont_require_inputs0/script", + "input": null +} +INFO Final process status is success +.Resolved '/build/cwltool-3.0.20210124104916/tests/with_doc.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/with_doc.cwl' +.Resolved '/build/cwltool-3.0.20210124104916/tests/without_doc.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/without_doc.cwl' +..INFO [job b49e8909-007f-44e5-8cc7-26e0f6f8c7ca] /tmp/8hxamkbi$ python3 \ + inp.py > /tmp/8hxamkbi/main.cwl +ERROR Tool definition failed validation: +../../../tests/wf/timelimit.cwl:12:1: checking field `requirements` +../../../tests/wf/timelimit.cwl:13:3: checking item + Field `class` contains undefined reference to + `http://commonwl.org/cwltool#TimeLimit` +INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/timelimit-fail.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/timelimit-fail.cwl' +INFO [job b49e8909-007f-44e5-8cc7-26e0f6f8c7ca] completed success +[workflow _2] start [workflow _2] starting step step1_2 [step step1_2] start -[job step1] /tmp/v8eielie$ python3 \ +[job step1] /tmp/ifvimoew$ python3 \ -c \ 'import sys print(sys.argv[1]) @@ -2949,12 +2978,19 @@ exit(1) ' \ 1 +INFO [job main.cwl_2] /tmp/kxzojtbu$ echo \ + zipper +zipper +INFO [job main.cwl_2] completed success +INFO Final process status is success +.ssINFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/iwdr-entry.cwl' 1 [job step1] completed success [step step1_2] completed success [workflow _2] starting step step3 [step step3] start -[job step3] /tmp/_yj3zw6u$ python3 \ +[job step3] /tmp/37ehuhy2$ python3 \ -c \ 'import sys print(sys.argv[1]) @@ -2971,78 +3007,53 @@ 5 [job step3] completed permanentFail [step step3] completed permanentFail +[workflow _2] starting step step2 +[step step2] start +[job step2] /tmp/63i_nxgz$ python3 \ + -c \ + 'import sys +print(sys.argv[1]) +if sys.argv[1] == "2": + exit(1) +else: + f = open("foo"+sys.argv[1]+".txt", "wb") + content = sys.argv[1]+"\n" + f.write(content.encode('"'"'utf-8'"'"')) +if sys.argv[1] == "5": + exit(1) +' \ + 2 +2 +[job step2] Job error: +("Error collecting output for parameter 'out':\n../../../tests/wf/echo.cwl:23:7: Did not find output file with glob pattern: '['foo2.txt']'", {}) +[job step2] completed permanentFail +[step step2] Output is missing expected field file:///build/cwltool-3.0.20210124104916/tests/wf/wffail.cwl#step2/out +[step step2] completed permanentFail [workflow _2] completed permanentFail -...INFO 3.0.20210124104916 +..INFO 3.0.20210124104916 INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/trick_defaults.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/trick_defaults.cwl' .INFO 3.0.20210124104916 INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/count-lines1-wf.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/count-lines1-wf.cwl' -ERROR Tool definition failed validation: -../../../tests/wf/timelimit.cwl:12:1: checking field `requirements` -../../../tests/wf/timelimit.cwl:13:3: checking item - Field `class` contains undefined reference to - `http://commonwl.org/cwltool#TimeLimit` -INFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/timelimit-fail.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/timelimit-fail.cwl' -usage: /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script - [-h] --input INPUT [job_order] -/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script: error: the following arguments are required: --input -INFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script' to 'file:///build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script' -INFO [job 8cd6a031-3866-4e76-9c3f-30752c50310f] /tmp/xpa7pa13$ python3 \ - inp.py > /tmp/xpa7pa13/main.cwl -INFO [job 8cd6a031-3866-4e76-9c3f-30752c50310f] completed success -INFO [job main.cwl_2] /tmp/yu8bbxpc$ echo \ - zipper -zipper -INFO [job main.cwl_2] completed success -INFO Final process status is success -.....sssINFO [workflow ] start -INFO [workflow ] starting step step1 -INFO [step step1] start -INFO [job step1] /tmp/b8kqtgp9$ echo \ - -n \ - foo \ - INP1 \ - INP2 > /tmp/b8kqtgp9/step1_out -INFO [job step1] completed success -INFO [step step1] completed success -INFO [workflow ] completed success -INFO Final process status is success -.INFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' -INFO [job timelimit-fail.cwl] /tmp/9sxh31mm$ sleep \ +.ERROR Workflow or tool uses unsupported feature: +Singularity is required to run this tool: singularity executable is not available +.sssINFO [job timelimit-fail.cwl] /tmp/xgkkdo0t$ sleep \ 5 -..INFO 3.0.20210124104916 +...INFO 3.0.20210124104916 INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/count-lines1-wf.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/count-lines1-wf.cwl' -DEBUG Parsed job order from command line: { - "id": "/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/popen-gw14/test_dont_require_inputs0/script", - "input": null -} -INFO Final process status is success -.Resolved '/build/cwltool-3.0.20210124104916/tests/with_doc.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/with_doc.cwl' -.Resolved '/build/cwltool-3.0.20210124104916/tests/without_doc.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/without_doc.cwl' -.ERROR I'm sorry, I couldn't load this CWL file, try again with --debug for more information. -The error was: 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl#main/dummy_target' -.INFO 3.0.20210124104916 -INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.json' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.json' +MPIRequirement with containers is a beta feature +.MPIRequirement with containers is a beta feature +..MPIRequirement with containers is a beta feature +MPI has been required while Docker is hinted, discarding Docker hint(s) .INFO 3.0.20210124104916 INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/count-lines1-wf.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/count-lines1-wf.cwl' -..WARNING [job timelimit-fail.cwl] exceeded time limit of 3 seconds and will be terminated +MPIRequirement with containers is a beta feature +Docker has been required while MPI is hinted, discarding MPI hint(s) +.MPIRequirement with containers is a beta feature +.MPIRequirement with containers is a beta feature +.WARNING [job timelimit-fail.cwl] exceeded time limit of 3 seconds and will be terminated INFO [job timelimit-fail.cwl] Max memory used: 0MiB WARNING [job timelimit-fail.cwl] completed permanentFail WARNING Final process status is permanentFail -.INFO [workflow _2] start -INFO [workflow _2] starting step step1_2 -INFO [step step1_2] start -INFO [job step1_2] /tmp/0vm4m7e0$ echo \ - -n \ - foo \ - INP1 \ - INP2 > /tmp/0vm4m7e0/step1_out -INFO [job step1_2] completed success -INFO [step step1_2] completed success -INFO [workflow _2] completed success -INFO Final process status is success ...................................Resolved '/build/cwltool-3.0.20210124104916/tests/test_bad_outputs_wf.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/test_bad_outputs_wf.cwl' Validation failed at Traceback (most recent call last): @@ -3089,26 +3100,21 @@ } ] .Resolved '/build/cwltool-3.0.20210124104916/tests/checker_wf/broken-wf.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/checker_wf/broken-wf.cwl' -MPIRequirement with containers is a beta feature -.MPIRequirement with containers is a beta feature -.MPIRequirement with containers is a beta feature -MPI has been required while Docker is hinted, discarding Docker hint(s) -.MPIRequirement with containers is a beta feature -Docker has been required while MPI is hinted, discarding MPI hint(s) -.MPIRequirement with containers is a beta feature -.MPIRequirement with containers is a beta feature -.Workflow checker warning: -../../../tests/checker_wf/broken-wf.cwl:10:5: Source 'letters0' of type ["string", "int"] may be - incompatible -../../../tests/checker_wf/broken-wf.cwl:42:7: with sink 'echo_in' of type ["string", {"type": - "array", "items": "string"}] +Workflow checker warning: ../../../tests/checker_wf/broken-wf.cwl:16:5: Source 'letters2' of type ["string", "int"] may be incompatible ../../../tests/checker_wf/broken-wf.cwl:48:7: with sink 'echo_in' of type {"type": "array", "items": ["string", {"type": "array", "items": "string"}]} source has linkMerge method merge_nested +../../../tests/checker_wf/broken-wf.cwl:10:5: Source 'letters0' of type ["string", "int"] may be + incompatible +../../../tests/checker_wf/broken-wf.cwl:42:7: with sink 'echo_in' of type ["string", {"type": + "array", "items": "string"}] Resolved '/build/cwltool-3.0.20210124104916/tests/checker_wf/broken-wf2.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/checker_wf/broken-wf2.cwl' +/tmp/wcvorl0s/stg119d7c1a-3980-42ff-a423-fc606152cbc1/tmp4/alpha/foxtrot +.INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' Validation failed at Traceback (most recent call last): File "/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/workflow.py", line 105, in __init__ @@ -3129,18 +3135,17 @@ schema_salad.exceptions.ValidationException: ../../../tests/checker_wf/broken-wf2.cwl:42:16: Workflow step output 'other' does not correspond to ../../../tests/checker_wf/echo.cwl:12:1: tool output (expected 'txt') Resolved '/build/cwltool-3.0.20210124104916/tests/checker_wf/broken-wf3.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/checker_wf/broken-wf3.cwl' -/tmp/ml2djwmr/stg0085d9b9-90d4-48c5-917f-5ddbc1dc78d7/tmp4/alpha/foxtrot -.Workflow checker warning: -../../../tests/checker_wf/functional-wf.cwl:10:5: Source 'letters0' of type ["string", "int"] may - be incompatible -../../../tests/checker_wf/functional-wf.cwl:37:7: with sink 'echo_in' of type ["string", - {"type": "array", "items": "string"}] +Workflow checker warning: ../../../tests/checker_wf/functional-wf.cwl:16:5: Source 'letters2' of type ["string", "int"] may be incompatible ../../../tests/checker_wf/functional-wf.cwl:43:7: with sink 'echo_in' of type {"type": "array", "items": ["string", {"type": "array", "items": "string"}]} source has linkMerge method merge_nested +../../../tests/checker_wf/functional-wf.cwl:10:5: Source 'letters0' of type ["string", "int"] may + be incompatible +../../../tests/checker_wf/functional-wf.cwl:37:7: with sink 'echo_in' of type ["string", + {"type": "array", "items": "string"}] Validation failed at Traceback (most recent call last): File "/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/workflow.py", line 105, in __init__ @@ -3167,9 +3172,39 @@ .Resolved '/build/cwltool-3.0.20210124104916/tests/portable.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/portable.cwl' .INFO 3.0.20210124104916 INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/revsort.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/revsort.cwl' +INFO [workflow ] start +INFO [workflow ] starting step step1 +INFO [step step1] start +INFO [job step1] /tmp/863g0izg$ echo \ + -n \ + foo \ + INP1 \ + INP2 > /tmp/863g0izg/step1_out +INFO [job step1] completed success +INFO [step step1] completed success +INFO [workflow ] completed success +INFO Final process status is success +.INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl' +ERROR I'm sorry, I couldn't load this CWL file, try again with --debug for more information. +The error was: 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.cwl#main/dummy_target' +.INFO 3.0.20210124104916 +INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.json' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/scatter-wf4.json' INFO 3.0.20210124104916 INFO Resolved '/build/cwltool-3.0.20210124104916/tests/wf/echo.cwl' to 'file:///build/cwltool-3.0.20210124104916/tests/wf/echo.cwl' -ERROR Tool definition failed initialization: +INFO [workflow _2] start +INFO [workflow _2] starting step step1_2 +INFO [step step1_2] start +INFO [job step1_2] /tmp/eukh244u$ echo \ + -n \ + foo \ + INP1 \ + INP2 > /tmp/eukh244u/step1_out +INFO [job step1_2] completed success +INFO [step step1_2] completed success +INFO [workflow _2] completed success +INFO Final process status is success +.ERROR Tool definition failed initialization: Cannot identify root workflow! Notice that only Workflows can be visualized Traceback (most recent call last): File "/build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/main.py", line 1005, in main @@ -3187,7 +3222,6 @@ [workflow _3] inputs { "range": 3 } -[workflow _3] job step file:///build/cwltool-3.0.20210124104916/tests/scatter_numbers.cwl#generate_files not ready [workflow _3] starting step generate_list [step generate_list] job input { "file:///build/cwltool-3.0.20210124104916/tests/scatter_numbers.cwl#generate_list/max": 3 @@ -3206,7 +3240,7 @@ [step generate_list] completed success [workflow _3] starting step generate_files [step generate_files] start -[job generate_files] initializing from _:2c099512-df61-4377-8033-1f947346a6bf as part of step generate_files +[job generate_files] initializing from _:75c74b12-161d-4151-af86-80a117a24ad4 as part of step generate_files [job generate_files] { "number": 0 } @@ -3228,13 +3262,13 @@ } ] [job generate_files] initial work dir {} -[job generate_files] /tmp/_ra9tar9$ echo \ - 0 > /tmp/_ra9tar9/output.txt +[job generate_files] /tmp/had208zj$ echo \ + 0 > /tmp/had208zj/output.txt Could not collect memory usage, job ended before monitoring began. [job generate_files] completed success [job generate_files] outputs { "output": { - "location": "file:///tmp/_ra9tar9/output.txt", + "location": "file:///tmp/had208zj/output.txt", "basename": "output.txt", "nameroot": "output", "nameext": ".txt", @@ -3244,10 +3278,10 @@ "http://commonwl.org/cwltool#generation": 0 } } -[job generate_files] Removing input staging directory /tmp/ae0w4avl -[job generate_files] Removing temporary directory /tmp/719_7chl +[job generate_files] Removing input staging directory /tmp/bcqrnf0u +[job generate_files] Removing temporary directory /tmp/xv679kgq [step generate_files] start -[job generate_files_2] initializing from _:2c099512-df61-4377-8033-1f947346a6bf as part of step generate_files +[job generate_files_2] initializing from _:75c74b12-161d-4151-af86-80a117a24ad4 as part of step generate_files [job generate_files_2] { "number": 1 } @@ -3269,13 +3303,13 @@ } ] [job generate_files_2] initial work dir {} -[job generate_files_2] /tmp/izxyssdj$ echo \ - 1 > /tmp/izxyssdj/output.txt +[job generate_files_2] /tmp/mop_mnje$ echo \ + 1 > /tmp/mop_mnje/output.txt Could not collect memory usage, job ended before monitoring began. [job generate_files_2] completed success [job generate_files_2] outputs { "output": { - "location": "file:///tmp/izxyssdj/output.txt", + "location": "file:///tmp/mop_mnje/output.txt", "basename": "output.txt", "nameroot": "output", "nameext": ".txt", @@ -3285,10 +3319,10 @@ "http://commonwl.org/cwltool#generation": 0 } } -[job generate_files_2] Removing input staging directory /tmp/9qn9xwl3 -[job generate_files_2] Removing temporary directory /tmp/9m7u8hm7 +[job generate_files_2] Removing input staging directory /tmp/1shw2rsu +[job generate_files_2] Removing temporary directory /tmp/afyn4xje [step generate_files] start -[job generate_files_3] initializing from _:2c099512-df61-4377-8033-1f947346a6bf as part of step generate_files +[job generate_files_3] initializing from _:75c74b12-161d-4151-af86-80a117a24ad4 as part of step generate_files [job generate_files_3] { "number": 2 } @@ -3310,13 +3344,13 @@ } ] [job generate_files_3] initial work dir {} -[job generate_files_3] /tmp/2pbo4lgj$ echo \ - 2 > /tmp/2pbo4lgj/output.txt +[job generate_files_3] /tmp/w2c7jdt_$ echo \ + 2 > /tmp/w2c7jdt_/output.txt Could not collect memory usage, job ended before monitoring began. [job generate_files_3] completed success [job generate_files_3] outputs { "output": { - "location": "file:///tmp/2pbo4lgj/output.txt", + "location": "file:///tmp/w2c7jdt_/output.txt", "basename": "output.txt", "nameroot": "output", "nameext": ".txt", @@ -3329,7 +3363,7 @@ [step generate_files] produced output { "file:///build/cwltool-3.0.20210124104916/tests/scatter_numbers.cwl#generate_files/output": [ { - "location": "file:///tmp/_ra9tar9/output.txt", + "location": "file:///tmp/had208zj/output.txt", "basename": "output.txt", "nameroot": "output", "nameext": ".txt", @@ -3339,7 +3373,7 @@ "http://commonwl.org/cwltool#generation": 0 }, { - "location": "file:///tmp/izxyssdj/output.txt", + "location": "file:///tmp/mop_mnje/output.txt", "basename": "output.txt", "nameroot": "output", "nameext": ".txt", @@ -3349,7 +3383,7 @@ "http://commonwl.org/cwltool#generation": 0 }, { - "location": "file:///tmp/2pbo4lgj/output.txt", + "location": "file:///tmp/w2c7jdt_/output.txt", "basename": "output.txt", "nameroot": "output", "nameext": ".txt", @@ -3365,7 +3399,7 @@ [workflow _3] outputs { "output": [ { - "location": "file:///tmp/_ra9tar9/output.txt", + "location": "file:///tmp/had208zj/output.txt", "basename": "output.txt", "nameroot": "output", "nameext": ".txt", @@ -3375,7 +3409,7 @@ "http://commonwl.org/cwltool#generation": 0 }, { - "location": "file:///tmp/izxyssdj/output.txt", + "location": "file:///tmp/mop_mnje/output.txt", "basename": "output.txt", "nameroot": "output", "nameext": ".txt", @@ -3385,7 +3419,7 @@ "http://commonwl.org/cwltool#generation": 0 }, { - "location": "file:///tmp/2pbo4lgj/output.txt", + "location": "file:///tmp/w2c7jdt_/output.txt", "basename": "output.txt", "nameroot": "output", "nameext": ".txt", @@ -3396,17 +3430,17 @@ } ] } -[job generate_files_3] Removing input staging directory /tmp/661ovyza -[job generate_files_3] Removing temporary directory /tmp/6syfsfak -Moving /tmp/_ra9tar9/output.txt to /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/output.txt -Moving /tmp/izxyssdj/output.txt to /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/output.txt_2 -Moving /tmp/2pbo4lgj/output.txt to /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/output.txt_3 -Removing intermediate output directory /tmp/cg_q_3_5 -Removing intermediate output directory /tmp/_ra9tar9 -Removing intermediate output directory /tmp/2pbo4lgj -Removing intermediate output directory /tmp/izxyssdj +[job generate_files_3] Removing input staging directory /tmp/kt5033qs +[job generate_files_3] Removing temporary directory /tmp/hkvyafr4 +Moving /tmp/had208zj/output.txt to /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/output.txt +Moving /tmp/mop_mnje/output.txt to /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/output.txt_2 +Moving /tmp/w2c7jdt_/output.txt to /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/output.txt_3 +Removing intermediate output directory /tmp/mop_mnje +Removing intermediate output directory /tmp/zpjffx8w +Removing intermediate output directory /tmp/w2c7jdt_ +Removing intermediate output directory /tmp/had208zj . -================= 315 passed, 103 skipped in 152.29s (0:02:32) ================= +================= 315 passed, 103 skipped in 134.64s (0:02:14) ================= I: pybuild pybuild:310: rm -Rf /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/tmp/ /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/main.cwl /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/output.txt* make[1]: Leaving directory '/build/cwltool-3.0.20210124104916' create-stamp debian/debhelper-build-stamp @@ -3453,12 +3487,12 @@ creating /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool creating /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/__main__.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ -copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/factory.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/subgraph.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ +copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/factory.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/provenance.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/pack.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ -copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/executors.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/task_queue.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ +copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/executors.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/cwlviewer.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/cwlrdf.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/resolver.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ @@ -3471,10 +3505,10 @@ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/procgenerator.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/workflow.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/main.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ -copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/process.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ -copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/udocker.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/singularity.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ +copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/udocker.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/flatten.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ +copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/process.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/validate_js.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/update.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/__pycache__/job.cpython-39.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/__pycache__ @@ -3889,10 +3923,10 @@ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/cwlNodeEngine.js -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool creating /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests creating /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ -copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_validate_js.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ -copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_tmpdir.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_udocker.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ +copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_validate_js.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_trs.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ +copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_tmpdir.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_toolargparse.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_target.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_subgraph.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ @@ -3902,18 +3936,18 @@ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_relax_path_checks.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_recursive_validation.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_rdfprint.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ +copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_pack.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_provenance.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_procgenerator.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_pathmapper.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ -copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_pack.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_parallel.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ -copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_mpi.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_override.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ -copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_load_tool.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ +copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_mpi.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_examples.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ +copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_load_tool.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ +copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_iwdr.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_js_sandbox.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_ext.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ -copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_iwdr.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_http_input.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_fetch.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ copying /build/cwltool-3.0.20210124104916/.pybuild/cpython3_3.9_cwltool/build/cwltool/tests/__pycache__/test_empty_input.cpython-39-pytest-6.0.2.pyc -> /build/cwltool-3.0.20210124104916/debian/cwltool/usr/lib/python3.9/dist-packages/cwltool/tests/__pycache__ @@ -4431,12 +4465,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2039865/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2039865/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1439249 and its subdirectories -I: Current time: Sat Jun 1 04:47:24 -12 2024 -I: pbuilder-time-stamp: 1717260444 +I: removing directory /srv/workspace/pbuilder/2039865 and its subdirectories +I: Current time: Mon May 1 00:28:05 +14 2023 +I: pbuilder-time-stamp: 1682850485