Diff of the two buildlogs: -- --- b1/build.log 2024-07-16 19:26:27.108316742 +0000 +++ b2/build.log 2024-07-16 19:29:39.724142638 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 16 07:20:55 -12 2024 -I: pbuilder-time-stamp: 1721157655 +I: Current time: Tue Aug 19 15:49:29 +14 2025 +I: pbuilder-time-stamp: 1755568169 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./freecontact_1.0.21-9.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.PBCUE7xD/trustedkeys.kbx': General error -gpgv: Signature made Wed Apr 7 03:19:52 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.h0BJDNVU/trustedkeys.kbx': General error +gpgv: Signature made Thu Apr 8 05:19:52 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -28,135 +28,166 @@ dpkg-source: info: unpacking freecontact_1.0.21-9.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2396923/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3685732/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 19 15:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3685732/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3685732/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=20 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=42 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a804529092a844ef84e49f0347bf1902' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2396923' - PS1='# ' - PS2='> ' + INVOCATION_ID=33aa5972cf544e71b235d9860647211f + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3685732 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rgYcdLPi/pbuilderrc_EsZi --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rgYcdLPi/b1 --logfile b1/build.log freecontact_1.0.21-9.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rgYcdLPi/pbuilderrc_bNvG --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rgYcdLPi/b2 --logfile b2/build.log freecontact_1.0.21-9.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-22-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.94-1 (2024-06-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Mar 27 22:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Mar 27 22:09 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Mar 27 22:09 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Mar 27 22:09 more - -rwsr-xr-x 1 root root 55528 Mar 27 22:09 mount - -rwxr-xr-x 1 root root 18664 Mar 27 22:09 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 6 21:26 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Mar 27 22:09 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Jan 19 21:59 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Mar 27 22:09 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Mar 27 22:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/2396923/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Mar 29 2024 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Mar 29 2024 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Mar 29 2024 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Mar 29 2024 more + -rwsr-xr-x 1 root root 55528 Mar 29 2024 mount + -rwxr-xr-x 1 root root 18664 Mar 29 2024 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Aug 19 15:49 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Mar 29 2024 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Jan 20 2024 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Mar 29 2024 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Mar 29 2024 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/3685732/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -284,7 +315,7 @@ Get: 66 http://deb.debian.org/debian bullseye/main amd64 libxerces-c3.2 amd64 3.2.3+debian-3+deb11u1 [870 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libxerces-c-dev amd64 3.2.3+debian-3+deb11u1 [1692 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 xsdcxx amd64 4.0.0-8.1 [1875 kB] -Fetched 107 MB in 2s (56.0 MB/s) +Fetched 107 MB in 5s (22.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) @@ -578,7 +609,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../freecontact_1.0.21-9_source.changes +I: user script /srv/workspace/pbuilder/3685732/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/3685732/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../freecontact_1.0.21-9_source.changes dpkg-buildpackage: info: source package freecontact dpkg-buildpackage: info: source version 1.0.21-9 dpkg-buildpackage: info: source distribution unstable @@ -779,7 +814,7 @@ checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown -checking for x86 cpuid 0x00000001 output... 600f12:10000800:9eb82203:78bfbff +checking for x86 cpuid 0x00000001 output... 306c1:29020800:fffa3223:178bfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes @@ -965,7 +1000,7 @@ checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown -checking for x86 cpuid 0x00000001 output... 600f12:13000800:9eb82203:78bfbff +checking for x86 cpuid 0x00000001 output... 306c1:4020800:fffa3223:178bfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes @@ -1149,17 +1184,17 @@ make[2]: Leaving directory '/build/reproducible-path/freecontact-1.0.21/lib' make[1]: Leaving directory '/build/reproducible-path/freecontact-1.0.21' dh_auto_build - make -j20 + make -j42 make[1]: Entering directory '/build/reproducible-path/freecontact-1.0.21' Making all in lib make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' make all-am make[3]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp -/bin/bash ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp +/bin/sh ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -c glassofast-real.f90 -fPIC -o .libs/libfreecontact_la-glassofast-real.o -f951: Warning: '-Werror=' argument '-funroll-completely-grow-size' is not valid for Fortran libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -fPIC -DPIC -o .libs/libfreecontact_la-freecontact.o +f951: Warning: '-Werror=' argument '-funroll-completely-grow-size' is not valid for Fortran cc1plus: warning: '-Werror=' argument '-funroll-completely-grow-size' is not valid for C++ libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -c glassofast-real.f90 -o libfreecontact_la-glassofast-real.o >/dev/null 2>&1 In file included from freecontact.cpp:32: @@ -1233,7 +1268,7 @@ 1001 | ali_t& ali_t::push(const std::vector& __al) throw (alilen_error) | ^~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -o libfreecontact_la-freecontact.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/x86_64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lgfortran -lm -lquadmath -lblas -llapack +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/x86_64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lgfortran -lm -lquadmath -lblas -llapack libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/libfreecontact_la-freecontact.o .libs/libfreecontact_la-glassofast-real.o -lrt -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lgfortran -lquadmath -lblas -llapack -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -fopenmp -pthread -g -O2 -fstack-protector-strong -pthread -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -pthread -Wl,-soname -Wl,libfreecontact.so.0 -o .libs/libfreecontact.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfreecontact.so.0" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so.0") libtool: link: (cd ".libs" && rm -f "libfreecontact.so" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so") @@ -1282,6 +1317,462 @@ g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-_write_bioxsd.o `test -f '_write_bioxsd.cpp' || echo './'`_write_bioxsd.cpp g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact_input_xsd.o `test -f 'freecontact_input_xsd.cxx' || echo './'`freecontact_input_xsd.cxx In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1507 | sequence (::std::auto_ptr< sequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1585 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1665 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1741 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1817 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1893 | translationData (::std::auto_ptr< translationData_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2611 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3051 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3109 | len (::std::auto_ptr< len_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3287 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3366 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3442 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3877 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3935 | bases (::std::auto_ptr< bases_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4414 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4566 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4796 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5589 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5798 | className (::std::auto_ptr< className_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5938 | properties (::std::auto_ptr< properties_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6385 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1507 | sequence (::std::auto_ptr< sequence_type > p); @@ -1330,6 +1821,11 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1817 | note (::std::auto_ptr< note_type > p); @@ -1341,6 +1837,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1354,6 +1857,18 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6703 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); @@ -1366,6 +1881,18 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); @@ -1378,6 +1905,54 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7203 | frame (::std::auto_ptr< frame_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7279 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); @@ -1426,6 +2001,18 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7419 | alignment (::std::auto_ptr< alignment_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2611 | note (::std::auto_ptr< note_type > p); @@ -1438,6 +2025,18 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3051 | pos (::std::auto_ptr< pos_type > p); @@ -1486,6 +2085,11 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3442 | strand (::std::auto_ptr< strand_type > p); @@ -1497,6 +2101,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1522,6 +2133,30 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7901 | predicted (::std::auto_ptr< predicted_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7977 | experimental (::std::auto_ptr< experimental_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3877 | pos (::std::auto_ptr< pos_type > p); @@ -1538,6 +2173,11 @@ BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3935 | bases (::std::auto_ptr< bases_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8130 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -1545,6 +2185,25 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8217 | MethodResult (::std::auto_ptr< method_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1558,10 +2217,34 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8444 | Result (::std::auto_ptr< methodIdRef_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -1598,6 +2281,18 @@ BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4414 | species (::std::auto_ptr< species_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8602 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -1606,6 +2301,18 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); @@ -1618,6 +2325,18 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8818 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4566 | chromosome (::std::auto_ptr< chromosome_type > p); @@ -1666,6 +2385,54 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8973 | dataReference (::std::auto_ptr< dataReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9113 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9189 | reliability (::std::auto_ptr< reliability_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); @@ -1678,10 +2445,111 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9566 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9642 | index (::std::auto_ptr< index_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9718 | unit (::std::auto_ptr< unit_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9794 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9974 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10032 | value (::std::auto_ptr< value_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10285 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5589 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10361 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -1689,11 +2557,66 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10419 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10679 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10755 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5798 | className (::std::auto_ptr< className_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10813 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -1713,6 +2636,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1507 | sequence (::std::auto_ptr< sequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1725,6 +2660,42 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1585 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1665 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11072 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1737,6 +2708,90 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1741 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11148 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11206 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1817 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1893 | translationData (::std::auto_ptr< translationData_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1754,6 +2809,11 @@ BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6703 | position (::std::auto_ptr< position_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11465 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -1761,6 +2821,25 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11544 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1774,6 +2853,18 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11620 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); @@ -1786,6 +2877,18 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); @@ -1798,6 +2901,42 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12003 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7203 | frame (::std::auto_ptr< frame_type > p); @@ -1814,6 +2953,18 @@ BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7279 | phase (::std::auto_ptr< phase_type > p); | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -1822,6 +2973,54 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12377 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7419 | alignment (::std::auto_ptr< alignment_type > p); @@ -1834,6 +3033,66 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12669 | samePoint (::std::auto_ptr< samePoint_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12745 | samePartition (::std::auto_ptr< samePartition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12821 | outside (::std::auto_ptr< outside_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); @@ -1845,6 +3104,30 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2611 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13071 | correspondance (::std::auto_ptr< correspondance_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1857,6 +3140,42 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3051 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13211 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3109 | len (::std::auto_ptr< len_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1870,10 +3189,22 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7977 | experimental (::std::auto_ptr< experimental_type > p); | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -1881,6 +3212,42 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3287 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3366 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3442 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1893,6 +3260,23 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1900,12 +3284,42 @@ | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13597 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1507 | sequence (::std::auto_ptr< sequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); @@ -1917,6 +3331,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1585 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1929,6 +3354,40 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1665 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1741 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1942,6 +3401,53 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13908 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1817 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3877 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); @@ -1953,6 +3459,29 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3935 | bases (::std::auto_ptr< bases_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1893 | translationData (::std::auto_ptr< translationData_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1965,6 +3494,64 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1977,6 +3564,30 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14226 | dbName (::std::auto_ptr< dbName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -1989,11 +3600,35 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4414 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9189 | reliability (::std::auto_ptr< reliability_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14304 | dbUri (::std::auto_ptr< dbUri_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -2014,10 +3649,211 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14511 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4566 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4796 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15075 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9566 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -2025,11 +3861,34 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15151 | entryUri (::std::auto_ptr< entryUri_type > p); + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9642 | index (::std::auto_ptr< index_type > p); | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -2038,6 +3897,11 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9718 | unit (::std::auto_ptr< unit_type > p); @@ -2049,6 +3913,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2062,10 +3933,58 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15305 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9974 | position (::std::auto_ptr< position_type > p); | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -2085,6 +4004,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2611 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2098,6 +4028,42 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15870 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16028 | term (::std::auto_ptr< term_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10285 | pos (::std::auto_ptr< pos_type > p); @@ -2121,6 +4087,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3051 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2134,10 +4111,57 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16207 | speciesName (::std::auto_ptr< speciesName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3109 | len (::std::auto_ptr< len_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10679 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -2162,6 +4186,29 @@ BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10813 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3287 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16538 | supersequence (::std::auto_ptr< supersequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -2170,6 +4217,110 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3366 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3442 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5589 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16845 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11072 | pos (::std::auto_ptr< pos_type > p); @@ -2206,6 +4357,94 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17130 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5798 | className (::std::auto_ptr< className_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17206 | uri (::std::auto_ptr< uri_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17282 | version (::std::auto_ptr< version_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5938 | properties (::std::auto_ptr< properties_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3877 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17358 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17434 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11465 | min (::std::auto_ptr< min_type > p); @@ -2217,6 +4456,24 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 3935 | bases (::std::auto_ptr< bases_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2230,6 +4487,18 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11620 | strand (::std::auto_ptr< strand_type > p); @@ -2254,10 +4523,34 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -2265,34 +4558,34 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12003 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1507 | sequence (::std::auto_ptr< sequence_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2300,10 +4593,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1585 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2312,9 +4617,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1665 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2322,10 +4627,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12003 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1741 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2333,21 +4650,45 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1817 | note (::std::auto_ptr< note_type > p); +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6385 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4414 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1893 | translationData (::std::auto_ptr< translationData_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2356,9 +4697,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4566 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2367,9 +4708,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2377,22 +4718,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12377 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2401,9 +4742,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4796 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2411,21 +4752,58 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6703 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2433,6 +4811,54 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7203 | frame (::std::auto_ptr< frame_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7279 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12377 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7419 | alignment (::std::auto_ptr< alignment_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2493,9 +4919,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2611 | note (::std::auto_ptr< note_type > p); +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5589 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -2516,21 +4954,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3051 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3109 | len (::std::auto_ptr< len_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5798 | className (::std::auto_ptr< className_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2550,6 +4989,52 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5938 | properties (::std::auto_ptr< properties_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7901 | predicted (::std::auto_ptr< predicted_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7977 | experimental (::std::auto_ptr< experimental_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2562,21 +5047,34 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3287 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8130 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8217 | MethodResult (::std::auto_ptr< method_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3366 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6385 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2584,21 +5082,46 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3442 | strand (::std::auto_ptr< strand_type > p); +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13597 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8444 | Result (::std::auto_ptr< methodIdRef_type >); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2607,9 +5130,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6703 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2617,18 +5140,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13597 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8602 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2641,6 +5168,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2653,10 +5191,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3877 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2664,6 +5198,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2677,9 +5223,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3935 | bases (::std::auto_ptr< bases_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2687,14 +5233,15 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8818 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -2710,17 +5257,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2733,14 +5269,15 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8973 | dataReference (::std::auto_ptr< dataReference_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -2749,6 +5286,29 @@ BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9113 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7203 | frame (::std::auto_ptr< frame_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -2757,9 +5317,21 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7279 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9189 | reliability (::std::auto_ptr< reliability_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2772,10 +5344,11 @@ BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14511 | wsdl (::std::auto_ptr< wsdl_type > p); | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4414 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -2785,8 +5358,8 @@ | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -2802,17 +5375,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2837,17 +5399,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4566 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2860,17 +5411,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2883,21 +5428,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4796 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7419 | alignment (::std::auto_ptr< alignment_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2929,6 +5470,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9566 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2946,6 +5499,10 @@ BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 15305 | date (::std::auto_ptr< date_type > p); | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -2953,10 +5510,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2964,6 +5517,42 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9642 | index (::std::auto_ptr< index_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9718 | unit (::std::auto_ptr< unit_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -2976,6 +5565,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9794 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3000,6 +5601,46 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23645 | missing (::std::auto_ptr< missing_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9974 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23787 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3012,6 +5653,25 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10032 | value (::std::auto_ptr< value_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3024,6 +5684,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3036,11 +5708,62 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7901 | predicted (::std::auto_ptr< predicted_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 7977 | experimental (::std::auto_ptr< experimental_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16207 | speciesName (::std::auto_ptr< speciesName_type > p); | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10285 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3048,6 +5771,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24042 | alignment (::std::auto_ptr< alignedSequence_type >); + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3060,6 +5795,37 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10361 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10419 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3084,11 +5850,27 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8130 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10679 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3096,6 +5878,36 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8217 | MethodResult (::std::auto_ptr< method_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10755 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3108,6 +5920,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10813 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3133,9 +5957,20 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5589 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8444 | Result (::std::auto_ptr< methodIdRef_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3144,6 +5979,42 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11072 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17130 | name (::std::auto_ptr< name_type > p); @@ -3156,6 +6027,11 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17206 | uri (::std::auto_ptr< uri_type > p); @@ -3167,6 +6043,29 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11148 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8602 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3179,6 +6078,30 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11206 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24428 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3191,6 +6114,119 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8818 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24580 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11465 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11544 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24810 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -3203,11 +6239,35 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11620 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3215,11 +6275,27 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 8973 | dataReference (::std::auto_ptr< dataReference_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3227,10 +6303,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5798 | className (::std::auto_ptr< className_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3239,6 +6311,22 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24970 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9113 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); @@ -3250,11 +6338,1471 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9189 | reliability (::std::auto_ptr< reliability_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12003 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25133 | annotation (::std::auto_ptr< feature_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9566 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9642 | index (::std::auto_ptr< index_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9718 | unit (::std::auto_ptr< unit_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9794 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 9974 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10032 | value (::std::auto_ptr< value_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12377 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10285 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10361 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10419 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25932 | code (::std::auto_ptr< code_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12669 | samePoint (::std::auto_ptr< samePoint_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12745 | samePartition (::std::auto_ptr< samePartition_type > p); + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10679 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26253 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10755 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +10813 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12821 | outside (::std::auto_ptr< outside_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11072 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11148 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11206 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13071 | correspondance (::std::auto_ptr< correspondance_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11465 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26781 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11544 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11620 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26857 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26933 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27009 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13211 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12003 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27164 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27316 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27468 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27620 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13597 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27773 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13908 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28088 | annotation1 (::std::auto_ptr< feature_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12377 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14226 | dbName (::std::auto_ptr< dbName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14304 | dbUri (::std::auto_ptr< dbUri_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14511 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28471 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12669 | samePoint (::std::auto_ptr< samePoint_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28623 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12745 | samePartition (::std::auto_ptr< samePartition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28775 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +12821 | outside (::std::auto_ptr< outside_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28927 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23645 | missing (::std::auto_ptr< missing_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13071 | correspondance (::std::auto_ptr< correspondance_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23787 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15075 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15151 | entryUri (::std::auto_ptr< entryUri_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15305 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24042 | alignment (::std::auto_ptr< alignedSequence_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13211 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24428 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15870 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24580 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16028 | term (::std::auto_ptr< term_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24810 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16207 | speciesName (::std::auto_ptr< speciesName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24970 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13597 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16538 | supersequence (::std::auto_ptr< supersequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25133 | annotation (::std::auto_ptr< feature_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3262,33 +7810,34 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5938 | properties (::std::auto_ptr< properties_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16845 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3297,9 +7846,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6385 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13908 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3308,9 +7857,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3318,43 +7867,46 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6703 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17130 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17206 | uri (::std::auto_ptr< uri_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14226 | dbName (::std::auto_ptr< dbName_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17282 | version (::std::auto_ptr< version_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3362,20 +7914,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7203 | frame (::std::auto_ptr< frame_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17358 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7279 | phase (::std::auto_ptr< phase_type > p); +BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14304 | dbUri (::std::auto_ptr< dbUri_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -3385,8 +7938,8 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7419 | alignment (::std::auto_ptr< alignment_type > p); +BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -3396,9 +7949,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14511 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3407,9 +7960,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3418,9 +7971,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7901 | predicted (::std::auto_ptr< predicted_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3429,9 +7982,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7977 | experimental (::std::auto_ptr< experimental_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3439,32 +7992,34 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8130 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17434 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8217 | MethodResult (::std::auto_ptr< method_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3472,21 +8027,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8444 | Result (::std::auto_ptr< methodIdRef_type >); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8602 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3494,55 +8050,58 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8818 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8973 | dataReference (::std::auto_ptr< dataReference_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9113 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15075 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3551,9 +8110,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9189 | reliability (::std::auto_ptr< reliability_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15151 | entryUri (::std::auto_ptr< entryUri_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3562,9 +8121,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3574,9 +8133,9 @@ | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25932 | code (::std::auto_ptr< code_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3584,47 +8143,44 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23645 | missing (::std::auto_ptr< missing_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 723 | flat (::std::auto_ptr< flat_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23787 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15305 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 746 | FcAlignment (::std::auto_ptr< flat_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3634,9 +8190,9 @@ | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24042 | alignment (::std::auto_ptr< alignedSequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26253 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3645,9 +8201,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9566 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3655,21 +8211,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9642 | index (::std::auto_ptr< index_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9718 | unit (::std::auto_ptr< unit_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3678,14 +8234,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9794 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3693,66 +8244,48 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24428 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 881 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24580 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26781 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3760,27 +8293,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9974 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15870 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3788,29 +8311,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 931 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10032 | value (::std::auto_ptr< value_type > p); - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24810 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26857 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3819,9 +8335,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3831,21 +8347,9 @@ | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24970 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26933 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3853,32 +8357,32 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10285 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10361 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 973 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10419 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16028 | term (::std::auto_ptr< term_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3888,9 +8392,9 @@ | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25133 | annotation (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27009 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -3898,54 +8402,54 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10679 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 996 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10755 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1013 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10813 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1029 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1047 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11072 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16207 | speciesName (::std::auto_ptr< speciesName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11148 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3953,21 +8457,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11206 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1061 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11465 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3975,10 +8479,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from _write_bioxsd.cpp:20: +freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11544 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3987,9 +8502,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11620 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16538 | supersequence (::std::auto_ptr< supersequence_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3997,21 +8512,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27164 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4020,9 +8536,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12003 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4031,9 +8547,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4043,8 +8559,8 @@ | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27316 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4053,23 +8569,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25932 | code (::std::auto_ptr< code_type > p); - | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +16845 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27468 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4079,9 +8594,9 @@ | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26253 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27620 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4089,47 +8604,44 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26781 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17130 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26857 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17206 | uri (::std::auto_ptr< uri_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26933 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17282 | version (::std::auto_ptr< version_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27009 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27773 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4138,9 +8650,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12377 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17358 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4150,8 +8662,8 @@ | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27164 | localId (::std::auto_ptr< localId_type > p); +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4162,9 +8674,9 @@ | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27316 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4174,9 +8686,13 @@ | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27468 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28088 | annotation1 (::std::auto_ptr< feature_type >); + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17434 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4184,10 +8700,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4196,9 +8708,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4206,22 +8718,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27620 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12669 | samePoint (::std::auto_ptr< samePoint_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4230,9 +8730,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12745 | samePartition (::std::auto_ptr< samePartition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4240,22 +8740,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27773 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12821 | outside (::std::auto_ptr< outside_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4263,45 +8751,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28088 | annotation1 (::std::auto_ptr< feature_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13071 | correspondance (::std::auto_ptr< correspondance_type > p); +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4363,10 +8815,6 @@ BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28775 | database (::std::auto_ptr< database_type > p); | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13211 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4374,13 +8822,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -4417,17 +8858,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -4452,17 +8882,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13597 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -4475,212 +8894,253 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13908 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14226 | dbName (::std::auto_ptr< dbName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14304 | dbUri (::std::auto_ptr< dbUri_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14511 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15075 | accession (::std::auto_ptr< accession_type > p); - | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15151 | entryUri (::std::auto_ptr< entryUri_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23645 | missing (::std::auto_ptr< missing_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23787 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15305 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24042 | alignment (::std::auto_ptr< alignedSequence_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -4695,6 +9155,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 746 | FcAlignment (::std::auto_ptr< flat_type >); @@ -4706,61 +9178,94 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15870 | accession (::std::auto_ptr< accession_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24428 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24580 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16028 | term (::std::auto_ptr< term_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16207 | speciesName (::std::auto_ptr< speciesName_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24810 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -4772,6 +9277,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 881 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -4783,17 +9295,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -4809,6 +9310,11 @@ freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +24970 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4816,6 +9322,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 931 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -4827,6 +9340,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -4861,9 +9386,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4882,6 +9407,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25133 | annotation (::std::auto_ptr< feature_type >); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1029 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -4893,17 +9430,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16538 | supersequence (::std::auto_ptr< supersequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1047 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -4926,17 +9452,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -4949,266 +9464,6 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16845 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17130 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17206 | uri (::std::auto_ptr< uri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17282 | version (::std::auto_ptr< version_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17358 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17434 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:67:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 67 | flat (::std::auto_ptr< flat_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1507 | sequence (::std::auto_ptr< sequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1585 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1665 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1741 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1817 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1893 | translationData (::std::auto_ptr< translationData_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); | ^~~~~~~~ @@ -5219,42 +9474,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 23645 | missing (::std::auto_ptr< missing_type > p); @@ -5266,18 +9485,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 23787 | position (::std::auto_ptr< position_type > p); @@ -5324,9 +9531,9 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2611 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5356,6 +9563,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25932 | code (::std::auto_ptr< code_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); @@ -5367,6 +9586,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24428 | species (::std::auto_ptr< species_type > p); @@ -5382,6 +9613,18 @@ BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26253 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5411,30 +9654,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3051 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3109 | len (::std::auto_ptr< len_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); @@ -5468,22 +9687,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3287 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26781 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5491,11 +9699,15 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3366 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26857 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5503,23 +9715,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3442 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26933 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5529,9 +9736,9 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27009 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5552,9 +9759,9 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3877 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27164 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5564,9 +9771,9 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3935 | bases (::std::auto_ptr< bases_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27316 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5576,9 +9783,9 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27468 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5588,9 +9795,9 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27620 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5598,23 +9805,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ +freecontact_input_xsd.cxx:67:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 67 | flat (::std::auto_ptr< flat_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27773 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5624,8 +9829,8 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4414 | species (::std::auto_ptr< species_type > p); +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -5636,9 +9841,9 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5648,9 +9853,9 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4566 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28088 | annotation1 (::std::auto_ptr< feature_type >); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5658,11 +9863,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28471 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5672,9 +9888,13 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +25932 | code (::std::auto_ptr< code_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5682,11 +9902,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4796 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28623 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5695,9 +9922,9 @@ 57 | template class auto_ptr; | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5705,12 +9932,36 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28775 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25932 | code (::std::auto_ptr< code_type > p); +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +26253 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here @@ -5718,9 +9969,9 @@ | ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -5728,25 +9979,27 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +28927 | scoreType (::std::auto_ptr< scoreType_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26253 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -5772,6 +10025,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26933 | database (::std::auto_ptr< database_type > p); @@ -5794,6 +10059,18 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27164 | localId (::std::auto_ptr< localId_type > p); @@ -5809,6 +10086,18 @@ BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27316 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5827,18 +10116,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5589 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27620 | localId (::std::auto_ptr< localId_type > p); @@ -5883,30 +10160,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5798 | className (::std::auto_ptr< className_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5938 | properties (::std::auto_ptr< properties_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28088 | annotation1 (::std::auto_ptr< feature_type >); @@ -5918,36 +10171,12 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6385 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 28471 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here @@ -6030,59 +10259,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6703 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6112,11 +10292,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7203 | frame (::std::auto_ptr< frame_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6124,11 +10303,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7279 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6136,22 +10314,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7419 | alignment (::std::auto_ptr< alignment_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6159,32 +10325,32 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 97 | FcAlignment (::std::auto_ptr< flat_type > flat) - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In member function 'void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -freecontact_input_xsd.cxx:139:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 139 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6192,11 +10358,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6204,11 +10369,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7901 | predicted (::std::auto_ptr< predicted_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6216,11 +10380,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7977 | experimental (::std::auto_ptr< experimental_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6228,11 +10391,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8130 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6240,11 +10402,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8217 | MethodResult (::std::auto_ptr< method_type >); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6252,11 +10413,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6264,11 +10424,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8444 | Result (::std::auto_ptr< methodIdRef_type >); - | ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6276,15 +10435,14 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8602 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -6298,30 +10456,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8818 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:140:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 140 | species (::std::auto_ptr< species_type > x) | ^~~~~~~~ @@ -6352,42 +10486,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8973 | dataReference (::std::auto_ptr< dataReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9113 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9189 | reliability (::std::auto_ptr< reliability_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:230:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 230 | note (::std::auto_ptr< note_type > x) | ^~~~~~~~ @@ -6398,18 +10496,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:260:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 260 | translationData (::std::auto_ptr< translationData_type > x) | ^~~~~~~~ @@ -6450,18 +10536,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9566 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:444:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 444 | len (::std::auto_ptr< len_type > x) | ^~~~~~~~ @@ -6472,42 +10546,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9642 | index (::std::auto_ptr< index_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9718 | unit (::std::auto_ptr< unit_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9794 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:478:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 478 | min (::std::auto_ptr< min_type > x) | ^~~~~~~~ @@ -6528,28 +10566,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:150:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 150 | ::std::auto_ptr< flat_type > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9974 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:538:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 538 | strand (::std::auto_ptr< strand_type > x) | ^~~~~~~~ @@ -6560,30 +10576,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10032 | value (::std::auto_ptr< value_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:562:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 562 | minCertainty (::std::auto_ptr< minCertainty_type > x) | ^~~~~~~~ @@ -6604,26 +10596,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10285 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:634:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 634 | pos (::std::auto_ptr< pos_type > x) | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10361 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6631,25 +10606,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10419 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:658:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 658 | bases (::std::auto_ptr< bases_type > x) | ^~~~~~~~ @@ -6660,42 +10616,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10679 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10755 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10813 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:692:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 692 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) | ^~~~~~~~ @@ -6716,42 +10636,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11072 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11148 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11206 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:752:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 752 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) | ^~~~~~~~ @@ -6782,53 +10666,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:212:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 212 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11465 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11544 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11620 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:842:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 842 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) | ^~~~~~~~ @@ -6839,30 +10676,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:872:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 872 | chromosome (::std::auto_ptr< chromosome_type > x) | ^~~~~~~~ @@ -6873,30 +10686,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12003 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:902:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 902 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) | ^~~~~~~~ @@ -6947,17 +10736,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:229:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 229 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1180:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1180 | className (::std::auto_ptr< className_type > x) | ^~~~~~~~ @@ -6968,17 +10746,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:234:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 234 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1228:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1228 | properties (::std::auto_ptr< properties_type > x) | ^~~~~~~~ @@ -6989,31 +10756,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1262 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) - | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:251:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 251 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:256:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 256 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +freecontact_input_xsd.cxx:97:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 97 | FcAlignment (::std::auto_ptr< flat_type > flat) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -7021,26 +10766,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12377 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:269:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 269 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 1262 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -7054,17 +10786,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:274:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 274 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1398:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1398 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > x) | ^~~~~~~~ @@ -7075,19 +10796,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:287:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 287 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:301:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 301 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +freecontact_input_xsd.cxx: In member function 'void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +freecontact_input_xsd.cxx:139:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 139 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -7105,50 +10817,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:311:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 311 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:325:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 325 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1476:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1476 | occurrenceName (::std::auto_ptr< occurrenceName_type > x) | ^~~~~~~~ @@ -7159,40 +10827,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12669 | samePoint (::std::auto_ptr< samePoint_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:340:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 340 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12745 | samePartition (::std::auto_ptr< samePartition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1506:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1506 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > x) | ^~~~~~~~ @@ -7203,28 +10837,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12821 | outside (::std::auto_ptr< outside_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:351:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 351 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1536:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1536 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > x) | ^~~~~~~~ @@ -7235,53 +10847,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:364:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 364 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:369:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 369 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:382:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 382 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1602:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1602 | frame (::std::auto_ptr< frame_type > x) | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:387:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 387 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7289,28 +10857,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:400:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 400 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 405 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1632:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1632 | phase (::std::auto_ptr< phase_type > x) | ^~~~~~~~ @@ -7321,49 +10867,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13071 | correspondance (::std::auto_ptr< correspondance_type > p); - | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:415:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 415 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:424:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 424 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:433:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 433 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1680:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1680 | alignment (::std::auto_ptr< alignment_type > x) | ^~~~~~~~ @@ -7384,50 +10887,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13211 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:451:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 451 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': -freecontact_input_xsd.cxx:473:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 473 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:483:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 483 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1778 | predicted (::std::auto_ptr< predicted_type > x) | ^~~~~~~~ @@ -7438,18 +10897,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1808:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1808 | experimental (::std::auto_ptr< experimental_type > x) | ^~~~~~~~ @@ -7470,18 +10917,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13597 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1882 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) | ^~~~~~~~ @@ -7502,18 +10937,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:1964:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 1964 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) | ^~~~~~~~ @@ -7524,30 +10947,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13908 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2012:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2012 | verdict (::std::auto_ptr< verdict_type > x) | ^~~~~~~~ @@ -7568,18 +10967,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14226 | dbName (::std::auto_ptr< dbName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2088:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2088 | verdict (::std::auto_ptr< verdict_type > x) | ^~~~~~~~ @@ -7590,112 +10977,26 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14304 | dbUri (::std::auto_ptr< dbUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14511 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ +freecontact_input_xsd.cxx:150:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 150 | ::std::auto_ptr< flat_type > r ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2118:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2118 | reliability (::std::auto_ptr< reliability_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2206:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2206 | name (::std::auto_ptr< name_type > x) | ^~~~~~~~ @@ -7746,30 +11047,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15075 | accession (::std::auto_ptr< accession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15151 | entryUri (::std::auto_ptr< entryUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2354:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2354 | value (::std::auto_ptr< value_type > x) | ^~~~~~~~ @@ -7780,30 +11057,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15305 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2384:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2384 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) | ^~~~~~~~ @@ -7817,18 +11070,6 @@ BioXSD-1.1_xsd.cxx:2418:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2418 | pos (::std::auto_ptr< pos_type > x) | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7836,27 +11077,14 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:212:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 212 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -7890,18 +11118,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15870 | accession (::std::auto_ptr< accession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2546:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2546 | strand (::std::auto_ptr< strand_type > x) | ^~~~~~~~ @@ -7912,30 +11128,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16028 | term (::std::auto_ptr< term_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2570:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2570 | certainty (::std::auto_ptr< certainty_type > x) | ^~~~~~~~ @@ -7946,30 +11138,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16207 | speciesName (::std::auto_ptr< speciesName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2614:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2614 | pos (::std::auto_ptr< pos_type > x) | ^~~~~~~~ @@ -7983,11 +11151,6 @@ BioXSD-1.1_xsd.cxx:2644:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2644 | strand (::std::auto_ptr< strand_type > x) | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7995,25 +11158,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16538 | supersequence (::std::auto_ptr< supersequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2668:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2668 | certainty (::std::auto_ptr< certainty_type > x) | ^~~~~~~~ @@ -8024,42 +11168,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2712:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2712 | min (::std::auto_ptr< min_type > x) | ^~~~~~~~ @@ -8070,15 +11178,14 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16845 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:229:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 229 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -8095,16 +11202,17 @@ BioXSD-1.1_xsd.cxx:2772:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 2772 | strand (::std::auto_ptr< strand_type > x) | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:234:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 234 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2796:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2796 | minCertainty (::std::auto_ptr< minCertainty_type > x) - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8112,15 +11220,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17130 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2796:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2796 | minCertainty (::std::auto_ptr< minCertainty_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -8134,27 +11240,14 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17206 | uri (::std::auto_ptr< uri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17282 | version (::std::auto_ptr< version_type > p); - | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:251:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 251 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -8168,15 +11261,14 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17358 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:256:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 256 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -8190,52 +11282,51 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2956:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2956 | insertion (::std::auto_ptr< insertion_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:269:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 269 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17434 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:274:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 274 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2956:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 2956 | insertion (::std::auto_ptr< insertion_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ +freecontact_input_xsd.cxx:287:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 287 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:301:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 301 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3004:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3004 | nextPoint (::std::auto_ptr< nextPoint_type > x) | ^~~~~~~~ @@ -8246,39 +11337,20 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ +freecontact_input_xsd.cxx:311:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 311 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -8292,6 +11364,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:325:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 325 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3064:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3064 | samePoint (::std::auto_ptr< samePoint_type > x) | ^~~~~~~~ @@ -8302,6 +11384,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:340:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 340 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3094:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3094 | samePartition (::std::auto_ptr< samePartition_type > x) | ^~~~~~~~ @@ -8312,6 +11404,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:351:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 351 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3124:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3124 | outside (::std::auto_ptr< outside_type > x) | ^~~~~~~~ @@ -8322,6 +11424,28 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:364:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 364 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:369:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 369 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3162:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3162 | correspondance (::std::auto_ptr< correspondance_type > x) | ^~~~~~~~ @@ -8332,6 +11456,28 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:382:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 382 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:387:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 387 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3210:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3210 | insertion (::std::auto_ptr< insertion_type > x) | ^~~~~~~~ @@ -8342,16 +11488,49 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:400:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 400 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 405 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3258:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3258 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:415:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 415 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3296:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3296 | reference (::std::auto_ptr< reference_type > x) | ^~~~~~~~ @@ -8362,6 +11541,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:424:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 424 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3348:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3348 | geneticCode (::std::auto_ptr< geneticCode_type > x) | ^~~~~~~~ @@ -8372,6 +11561,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:433:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 433 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3378:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3378 | phase (::std::auto_ptr< phase_type > x) | ^~~~~~~~ @@ -8392,6 +11591,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:451:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 451 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3446:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3446 | dbName (::std::auto_ptr< dbName_type > x) | ^~~~~~~~ @@ -8402,6 +11612,27 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': +freecontact_input_xsd.cxx:473:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 473 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:483:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 483 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3476:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3476 | dbUri (::std::auto_ptr< dbUri_type > x) | ^~~~~~~~ @@ -8412,6 +11643,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx:68:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 68 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3506:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3506 | dbVersion (::std::auto_ptr< dbVersion_type > x) | ^~~~~~~~ @@ -8492,6 +11733,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:85:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 85 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3774:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3774 | entryUri (::std::auto_ptr< entryUri_type > x) | ^~~~~~~~ @@ -8502,6 +11754,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:90:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 90 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3804:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3804 | entryVersion (::std::auto_ptr< entryVersion_type > x) | ^~~~~~~~ @@ -8522,6 +11785,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:107:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 107 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3868:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3868 | ontologyName (::std::auto_ptr< ontologyName_type > x) | ^~~~~~~~ @@ -8532,6 +11806,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:112:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 112 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3898:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3898 | ontologyUri (::std::auto_ptr< ontologyUri_type > x) | ^~~~~~~~ @@ -8545,6 +11830,10 @@ BioXSD-1.1_xsd.cxx:3928:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3928 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > x) | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:125:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 125 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8552,6 +11841,24 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:130:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 130 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3986:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 3986 | accession (::std::auto_ptr< accession_type > x) | ^~~~~~~~ @@ -8562,6 +11869,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx:143:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 143 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:4016:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 4016 | conceptUri (::std::auto_ptr< conceptUri_type > x) | ^~~~~~~~ @@ -8572,29 +11882,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4046 | term (::std::auto_ptr< term_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4080:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4080 | speciesName (::std::auto_ptr< speciesName_type > x) - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4110 | speciesNote (::std::auto_ptr< speciesNote_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4046 | term (::std::auto_ptr< term_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8602,19 +11899,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4144:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4144 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 157 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4174:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4174 | supersequence (::std::auto_ptr< supersequence_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4080:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4080 | speciesName (::std::auto_ptr< speciesName_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8622,19 +11919,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4204:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4204 | supersequenceName (::std::auto_ptr< supersequenceName_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx:167:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 167 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4234:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4234 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4110 | speciesNote (::std::auto_ptr< speciesNote_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8642,19 +11939,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4264:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4264 | variantAccession (::std::auto_ptr< variantAccession_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx:181:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 181 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4294:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4294 | variantNote (::std::auto_ptr< variantNote_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4144:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4144 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8662,11 +11959,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +freecontact_output_xsd.cxx:196:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 196 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -8674,9 +11969,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4358:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4358 | name (::std::auto_ptr< name_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4174:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4174 | supersequence (::std::auto_ptr< supersequence_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8684,19 +11979,19 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4388:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4388 | uri (::std::auto_ptr< uri_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx:207:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 207 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4418:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4418 | version (::std::auto_ptr< version_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4204:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4204 | supersequenceName (::std::auto_ptr< supersequenceName_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8704,19 +11999,20 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4448:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4448 | date (::std::auto_ptr< date_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:220:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 220 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4478 | wsdl (::std::auto_ptr< wsdl_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4234:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4234 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8724,29 +12020,24 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4508 | wsdlService (::std::auto_ptr< wsdlService_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:225:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 225 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4538:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4538 | wsdlPort (::std::auto_ptr< wsdlPort_type > x) - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:238:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 238 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4264:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4264 | variantAccession (::std::auto_ptr< variantAccession_type > x) | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4568:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4568 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8754,19 +12045,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4598:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4598 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4628:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4628 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4294:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4294 | variantNote (::std::auto_ptr< variantNote_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8774,11 +12062,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:243:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 243 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -8786,11 +12073,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23645 | missing (::std::auto_ptr< missing_type > p); - | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:256:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 256 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -8798,23 +12084,20 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23787 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4358:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4358 | name (::std::auto_ptr< name_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:261:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 261 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -8822,23 +12105,20 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4388:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4388 | uri (::std::auto_ptr< uri_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24042 | alignment (::std::auto_ptr< alignedSequence_type >); - | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:271:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 271 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -8846,47 +12126,39 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4418:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4418 | version (::std::auto_ptr< version_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4448:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4448 | date (::std::auto_ptr< date_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4478 | wsdl (::std::auto_ptr< wsdl_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24428 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ +freecontact_output_xsd.cxx:280:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 280 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -8894,71 +12166,59 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4508 | wsdlService (::std::auto_ptr< wsdlService_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24580 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4538:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4538 | wsdlPort (::std::auto_ptr< wsdlPort_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4568:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4568 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4598:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4598 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24810 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4628:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 4628 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24970 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ +freecontact_output_xsd.cxx:289:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 289 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -8966,23 +12226,20 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 5311 | relationName (::std::auto_ptr< relationName_type > x) + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25133 | annotation (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 307 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -8990,13 +12247,14 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5311 | relationName (::std::auto_ptr< relationName_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:329:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 329 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ @@ -9010,11 +12268,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +freecontact_output_xsd.cxx:339:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 339 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -9032,18 +12288,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25932 | code (::std::auto_ptr< code_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5535:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5535 | position (::std::auto_ptr< position_type > x) | ^~~~~~~~ @@ -9054,30 +12298,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26253 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5569:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5569 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > x) | ^~~~~~~~ @@ -9128,18 +12348,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26781 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5717:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5717 | species (::std::auto_ptr< species_type > x) | ^~~~~~~~ @@ -9150,30 +12358,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26857 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26933 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5747:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5747 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) | ^~~~~~~~ @@ -9184,18 +12368,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27009 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5777:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5777 | chromosome (::std::auto_ptr< chromosome_type > x) | ^~~~~~~~ @@ -9236,18 +12408,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27164 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5895:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5895 | feature (::std::auto_ptr< feature_type > x) | ^~~~~~~~ @@ -9258,18 +12418,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27316 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5925:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 5925 | condensedReferences (::std::auto_ptr< condensedReferences_type > x) | ^~~~~~~~ @@ -9280,62 +12428,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27468 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27620 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27773 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6089:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6089 | localId (::std::auto_ptr< localId_type > x) | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -9343,13 +12438,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6117:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6117 | code (::std::auto_ptr< code_type > x) | ^~~~~~~~ @@ -9360,18 +12448,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28088 | annotation1 (::std::auto_ptr< feature_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6195:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6195 | aminoacid (::std::auto_ptr< aminoacid_type > x) | ^~~~~~~~ @@ -9402,100 +12478,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28471 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28623 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6389:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6389 | ontology (::std::auto_ptr< ontology_type > x) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28775 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28927 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6419:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6419 | database (::std::auto_ptr< database_type > x) | ^~~~~~~~ @@ -9506,18 +12498,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6449:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6449 | scoreType (::std::auto_ptr< scoreType_type > x) | ^~~~~~~~ @@ -9558,18 +12538,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6561:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6561 | localId (::std::auto_ptr< localId_type > x) | ^~~~~~~~ @@ -9590,18 +12558,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6617:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6617 | feature (::std::auto_ptr< feature_type > x) | ^~~~~~~~ @@ -9642,18 +12598,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6767:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 6767 | ontology (::std::auto_ptr< ontology_type > x) | ^~~~~~~~ @@ -9744,160 +12688,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7570:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7570 | BiosequenceRecord (::std::auto_ptr< sequence_type > sequence) | ^~~~~~~~ @@ -9919,198 +12709,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:68:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 68 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:85:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 85 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:90:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 90 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1507 | sequence (::std::auto_ptr< sequence_type > p); - | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:107:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 107 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1585 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:112:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 112 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1665 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:125:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 125 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1741 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1817 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:130:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 130 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1893 | translationData (::std::auto_ptr< translationData_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - | ^~~~~~~~ -freecontact_output_xsd.cxx:143:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 143 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 157 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7641:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7641 | ::std::auto_ptr< sequence_type > r ( | ^~~~~~~~ @@ -10121,57 +12719,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:167:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 167 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx:181:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 181 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx:196:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 196 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx:207:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 207 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:220:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 220 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7658:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7658 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -10192,17 +12739,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:225:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 225 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7686:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7686 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -10213,17 +12749,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:238:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 238 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7697:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7697 | ::std::auto_ptr< reference_type > r ( | ^~~~~~~~ @@ -10234,17 +12759,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:243:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 243 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7714:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7714 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -10255,17 +12769,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:256:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 256 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7725:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7725 | ::std::auto_ptr< name_type > r ( | ^~~~~~~~ @@ -10276,18 +12779,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7742:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7742 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -10298,40 +12789,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:261:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 261 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:271:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 271 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7753:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7753 | ::std::auto_ptr< note_type > r ( | ^~~~~~~~ @@ -10342,18 +12799,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7770:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7770 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -10374,21 +12819,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx:280:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 280 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7798:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7798 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -10399,13 +12829,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7809:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7809 | ::std::auto_ptr< inlineBaseQuality_type > r ( | ^~~~~~~~ @@ -10416,18 +12839,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 2611 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:7880:43: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7880 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) @@ -10439,33 +12850,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3051 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3109 | len (::std::auto_ptr< len_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:7929:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7929 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -10476,11 +12863,6 @@ BioXSD-1.1_xsd.cxx:7978:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 7978 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3287 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -10488,61 +12870,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3366 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3442 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:8027:35: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8027 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) | ^~~~~~~~ @@ -10553,30 +12880,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3877 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 3935 | bases (::std::auto_ptr< bases_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:8118:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8118 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -10598,18 +12901,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:8143:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8143 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -10620,33 +12911,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:8152:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8152 | ::std::auto_ptr< alignedSequence_type > r ( | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -10654,18 +12921,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:8168:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8168 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -10676,18 +12931,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4414 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:8179:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8179 | ::std::auto_ptr< note_type > r ( | ^~~~~~~~ @@ -10698,180 +12941,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4566 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 4796 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx:289:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 289 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 307 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:329:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 329 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx:339:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 339 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5589 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5798 | className (::std::auto_ptr< className_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 5938 | properties (::std::auto_ptr< properties_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6385 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::AlignedBiosequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:8924:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 8924 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -10953,18 +13022,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9036:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9036 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -10975,18 +13032,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6703 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9047:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9047 | ::std::auto_ptr< species_type > r ( | ^~~~~~~~ @@ -10997,18 +13042,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9064:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9064 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -11019,18 +13052,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9075:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9075 | ::std::auto_ptr< genomeBuild_type > r ( | ^~~~~~~~ @@ -11041,18 +13062,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9092:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9092 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -11143,18 +13152,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7203 | frame (::std::auto_ptr< frame_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9213:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9213 | ::std::auto_ptr< gap_type > r ( | ^~~~~~~~ @@ -11165,18 +13162,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7279 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9229:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9229 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -11227,18 +13212,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7419 | alignment (::std::auto_ptr< alignment_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9290:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9290 | ::std::auto_ptr< reversedDirection_type > r ( | ^~~~~~~~ @@ -11269,66 +13242,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7901 | predicted (::std::auto_ptr< predicted_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 7977 | experimental (::std::auto_ptr< experimental_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8130 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:9610:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9610 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -11340,18 +13253,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8217 | MethodResult (::std::auto_ptr< method_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9621:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9621 | ::std::auto_ptr< name_type > r ( | ^~~~~~~~ @@ -11382,30 +13283,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8444 | Result (::std::auto_ptr< methodIdRef_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9663:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9663 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -11429,11 +13306,6 @@ BioXSD-1.1_xsd.cxx:9688:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9688 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8602 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -11441,25 +13313,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9699:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9699 | ::std::auto_ptr< className_type > r ( | ^~~~~~~~ @@ -11470,18 +13323,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8818 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9716:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9716 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -11522,54 +13363,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 8973 | dataReference (::std::auto_ptr< dataReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9113 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9189 | reliability (::std::auto_ptr< reliability_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureTypeDetails::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:9866:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9866 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -11631,26 +13424,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9566 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9944:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9944 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9642 | index (::std::auto_ptr< index_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -11658,25 +13434,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9718 | unit (::std::auto_ptr< unit_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9953:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9953 | ::std::auto_ptr< databaseEntry_type > r ( | ^~~~~~~~ @@ -11687,18 +13444,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9794 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9969:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 9969 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -11729,126 +13474,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 9974 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10032 | value (::std::auto_ptr< value_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10285 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10361 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10419 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10679 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10755 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -10813 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11072 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureOccurrenceData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:10123:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10123 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -11860,30 +13485,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11148 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11206 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10134:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10134 | ::std::auto_ptr< appliesToWholeSequence_type > r ( | ^~~~~~~~ @@ -11934,18 +13535,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11465 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10204:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10204 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -11956,18 +13545,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11544 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10215:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10215 | ::std::auto_ptr< occurrenceName_type > r ( | ^~~~~~~~ @@ -11978,30 +13555,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11620 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10232:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10232 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -12012,18 +13565,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10243:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10243 | ::std::auto_ptr< occurrenceNote_type > r ( | ^~~~~~~~ @@ -12054,26 +13595,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12003 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10288:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10288 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12081,13 +13605,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10297:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10297 | ::std::auto_ptr< score_type > r ( | ^~~~~~~~ @@ -12121,18 +13638,6 @@ BioXSD-1.1_xsd.cxx:10339:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10339 | ::std::auto_ptr< frame_type > r ( | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12377 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12170,62 +13675,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12669 | samePoint (::std::auto_ptr< samePoint_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12745 | samePartition (::std::auto_ptr< samePartition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10392:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10392 | ::std::auto_ptr< alignment_type > r ( | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -12821 | outside (::std::auto_ptr< outside_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12233,25 +13685,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13071 | correspondance (::std::auto_ptr< correspondance_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:10460:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10460 | FeatureRecord (::std::auto_ptr< referenceSequence_type > referenceSequence) @@ -12263,18 +13696,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13211 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:10509:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10509 | ::std::auto_ptr< referenceSequence_type > r ( @@ -12286,18 +13707,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10523:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10523 | ::std::auto_ptr< annotation_type > r ( | ^~~~~~~~ @@ -12308,18 +13717,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13597 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10534:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10534 | ::std::auto_ptr< blockWithOccurrenceReferences_type > r ( | ^~~~~~~~ @@ -12330,42 +13727,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13908 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Evidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:10633:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10633 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -12387,18 +13748,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14226 | dbName (::std::auto_ptr< dbName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10661:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10661 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -12409,26 +13758,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14304 | dbUri (::std::auto_ptr< dbUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:10672:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10672 | ::std::auto_ptr< experimental_type > r ( | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12436,73 +13768,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14511 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:10733:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10733 | MethodResult (::std::auto_ptr< method_type > method) @@ -12514,18 +13779,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::MethodResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:10779:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10779 | ::std::auto_ptr< method_type > r ( @@ -12557,42 +13810,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15075 | accession (::std::auto_ptr< accession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15151 | entryUri (::std::auto_ptr< entryUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:10868:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10868 | Result (::std::auto_ptr< methodIdRef_type > methodIdRef) @@ -12604,54 +13821,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15305 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Result::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:10913:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 10913 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -12693,114 +13862,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15870 | accession (::std::auto_ptr< accession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16028 | term (::std::auto_ptr< term_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16207 | speciesName (::std::auto_ptr< speciesName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16538 | supersequence (::std::auto_ptr< supersequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::PredictionResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:11060:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11060 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -12812,26 +13873,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:11071:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11071 | ::std::auto_ptr< method_type > r ( | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -16845 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12839,13 +13883,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:11088:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11088 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -12886,21 +13923,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17130 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:11141:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11141 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12908,18 +13933,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17206 | uri (::std::auto_ptr< uri_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:11152:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11152 | ::std::auto_ptr< verdict_type > r ( | ^~~~~~~~ @@ -12930,102 +13943,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17282 | version (::std::auto_ptr< version_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17358 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17434 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:11217:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 11217 | ExperimentalEvidence (::std::auto_ptr< dataReference_type > dataReference) @@ -13200,234 +14117,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23645 | missing (::std::auto_ptr< missing_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23787 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24042 | alignment (::std::auto_ptr< alignedSequence_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24428 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24580 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24810 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -24970 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25133 | annotation (::std::auto_ptr< feature_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:12613:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12613 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -13539,18 +14228,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:12758:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12758 | ::std::auto_ptr< samePoint_type > r ( | ^~~~~~~~ @@ -13571,18 +14248,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -25932 | code (::std::auto_ptr< code_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:12786:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12786 | ::std::auto_ptr< samePartition_type > r ( | ^~~~~~~~ @@ -13596,11 +14261,6 @@ BioXSD-1.1_xsd.cxx:12803:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12803 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13608,28 +14268,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26253 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:12814:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12814 | ::std::auto_ptr< outside_type > r ( | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13637,54 +14278,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26781 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26857 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -26933 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27009 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralOutsideSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:12970:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12970 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -13696,18 +14289,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27164 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:12981:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 12981 | ::std::auto_ptr< correspondance_type > r ( | ^~~~~~~~ @@ -13728,18 +14309,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27316 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:13007:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13007 | ::std::auto_ptr< point_type > r ( | ^~~~~~~~ @@ -13760,18 +14329,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27468 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:13034:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13034 | ::std::auto_ptr< insertion_type > r ( | ^~~~~~~~ @@ -13792,18 +14349,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27620 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:13060:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13060 | ::std::auto_ptr< segment_type > r ( | ^~~~~~~~ @@ -13814,18 +14359,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27773 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:13076:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13076 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -13846,42 +14379,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28088 | annotation1 (::std::auto_ptr< feature_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneticCode::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:13231:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13231 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -13893,18 +14390,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28471 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:13242:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13242 | ::std::auto_ptr< reference_type > r ( | ^~~~~~~~ @@ -13915,54 +14400,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28623 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28775 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:13260:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13260 | ::std::auto_ptr< codon_type > r ( | ^~~~~~~~ @@ -13973,54 +14410,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -28927 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::TranslationData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:13354:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13354 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -14032,18 +14421,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:13365:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 13365 | ::std::auto_ptr< geneticCode_type > r ( | ^~~~~~~~ @@ -14094,194 +14471,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 723 | flat (::std::auto_ptr< flat_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 746 | FcAlignment (::std::auto_ptr< flat_type >); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 881 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 931 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 973 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 996 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1013 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1029 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1047 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1061 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:20: -freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:14184:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14184 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -14343,160 +14532,6 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Method::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:14410:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 14410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -14538,6 +14573,22 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from _write_bioxsd.cpp:22: +../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] + 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> + | ^ +In file included from _write_bioxsd.cpp:22: +../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 113 | ali_t& push(const std::vector& __al) throw (alilen_error); + | ^~~~~ +../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 116 | inline ali_t& push(const std::string& __l) throw (alilen_error) + | ^~~~~ +In file included from _write_bioxsd.cpp:22: +../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': +../lib/freecontact.h:80:79: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] + 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) + | ^ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:17632:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17632 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -14549,6 +14600,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact.cpp:25: +../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] + 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> + | ^ BioXSD-1.1_xsd.cxx:17643:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17643 | ::std::auto_ptr< relationName_type > r ( | ^~~~~~~~ @@ -14649,6 +14704,10 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact.cpp:25: +../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 113 | ali_t& push(const std::vector& __al) throw (alilen_error); + | ^~~~~ BioXSD-1.1_xsd.cxx:17769:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17769 | ::std::auto_ptr< associatedFeature_type > r ( | ^~~~~~~~ @@ -14659,6 +14718,14 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 116 | inline ali_t& push(const std::string& __l) throw (alilen_error) + | ^~~~~ +In file included from freecontact.cpp:25: +../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': +../lib/freecontact.h:80:79: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] + 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) + | ^ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::variation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:17927:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17927 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -14670,6 +14737,11 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from _write_bioxsd.cpp:22: +../lib/freecontact.h: At global scope: +../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 185 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + | ^~~~~ BioXSD-1.1_xsd.cxx:17938:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17938 | ::std::auto_ptr< canonicalVariant_type > r ( | ^~~~~~~~ @@ -14680,6 +14752,12 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 219 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + | ^~~~~ +../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 227 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + | ^~~~~ BioXSD-1.1_xsd.cxx:17955:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17955 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -14690,6 +14768,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 234 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) + | ^~~~~ BioXSD-1.1_xsd.cxx:17964:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17964 | ::std::auto_ptr< variant_type > r ( | ^~~~~~~~ @@ -14760,10 +14841,21 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact.cpp:25: +../lib/freecontact.h: At global scope: +../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 185 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + | ^~~~~ +../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 219 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + | ^~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:18102:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18102 | alignment (::std::auto_ptr< alignedSequence_type > alignedSequence) | ^~~~~~~~ +../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 227 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + | ^~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14771,6 +14863,9 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 234 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) + | ^~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:18148:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18148 | ::std::auto_ptr< alignmentOfReference_type > r ( @@ -14846,6 +14941,9 @@ BioXSD-1.1_xsd.cxx:18348:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18348 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ +_write_bioxsd.cpp:30:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 30 | auto_ptr _get_bxScore(const fc::contact_t& __ct, const std::string& __scid); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14853,6 +14951,24 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp: In function 'std::string _xml_flatali(std::istream&, bool)': +_write_bioxsd.cpp:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 38 | auto_ptr xml( fix::alignment(__is) ); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18359:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18359 | ::std::auto_ptr< sequenceName_type > r ( | ^~~~~~~~ @@ -14903,6 +15019,17 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp: In function 'void _write_bioxsd(const freecontact::ali_t&, const resn_mapper_t&, const std::map, std::vector >&, bool)': +_write_bioxsd.cpp:53:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 53 | auto_ptr seqSeg_p(new BioXSD::SequenceSegment()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18432:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18432 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -14933,6 +15060,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:56:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 56 | auto_ptr seqPos_p(new BioXSD::SequencePosition()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18471 | ::std::auto_ptr< subsequencePosition_type > r ( | ^~~~~~~~ @@ -14983,6 +15120,36 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:59:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 59 | auto_ptr seqRef_p(new BioXSD::SequenceReference()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:63:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 63 | auto_ptr seqRec_p( new BioXSD::GeneralAminoacidSequenceRecord( BioXSD::GeneralAminoacidSequence( ucq ))); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 67 | auto_ptr refSeq_p(new BioXSD::referenceSequence()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:18590:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18590 | annotation (::std::auto_ptr< feature_type > feature) @@ -14994,6 +15161,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 73 | auto_ptr metCatCon_p(new BioXSD::SemanticConcept()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::annotation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:18638:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18638 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -15005,6 +15182,16 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:79:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 79 | auto_ptr metCit_p(new BioXSD::EntryReference()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18649:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18649 | ::std::auto_ptr< feature_type > r ( | ^~~~~~~~ @@ -15028,6 +15215,9 @@ BioXSD-1.1_xsd.cxx:18680:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18680 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ +_write_bioxsd.cpp:82:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 82 | auto_ptr method_p(new BioXSD::method1("freecontact", "M#fc")); + | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -15035,6 +15225,13 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18689:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18689 | ::std::auto_ptr< occurrence_type > r ( | ^~~~~~~~ @@ -15045,6 +15242,96 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:86:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 86 | auto_ptr sc_l1_p(new BioXSD::scoreType("S#l1")); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:88:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 88 | auto_ptr metCit_p(new BioXSD::EntryReference()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:94:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 94 | auto_ptr method_p(new BioXSD::Method("l1-norm")); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:100:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 100 | auto_ptr sc_MI_p(new BioXSD::scoreType("S#MI")); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 102 | auto_ptr metCit_p(new BioXSD::EntryReference()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 108 | auto_ptr method_p(new BioXSD::Method("Mutual information")); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:114:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 114 | auto_ptr sc_fr_p(new BioXSD::scoreType("S#fr")); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:116:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 116 | auto_ptr metCit_p(new BioXSD::EntryReference()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:122:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 122 | auto_ptr method_p(new BioXSD::Method("Frobenius norm")); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::blockWithOccurrenceReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:18801:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18801 | ::std::auto_ptr< database_type > r ( @@ -15056,6 +15343,26 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:128:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 128 | auto_ptr featCon_p(new BioXSD::SemanticConcept()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:135:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 135 | auto_ptr feat_p(new BioXSD::FeatureType()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18812:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18812 | ::std::auto_ptr< ontology_type > r ( | ^~~~~~~~ @@ -15066,6 +15373,26 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:139:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 139 | auto_ptr cref_p(new BioXSD::condensedReferences1()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:142:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 142 | auto_ptr ann_p(new BioXSD::annotation1(feat_p)); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18823:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 18823 | ::std::auto_ptr< semanticConcept_type > r ( | ^~~~~~~~ @@ -15106,6 +15433,95 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:156:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 156 | auto_ptr pt1_p(new BioXSD::SequencePoint()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:158:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 158 | auto_ptr pt2_p(new BioXSD::SequencePoint()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:161:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 161 | auto_ptr pos_p(new BioXSD::SequencePosition()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:165:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 165 | auto_ptr occ_p(new BioXSD::occurrence()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:177:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 177 | auto_ptr occRef_p(new BioXSD::blockWithOccurrenceReferences()); + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp: At global scope: +_write_bioxsd.cpp:199:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 199 | auto_ptr _get_bxScore( const fc::contact_t& __ct, const std::string& __scid ) + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +freecontact.cpp: In function 'int main(int, char**)': +freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 165 | auto_ptr ali_ifs_p; + | ^~~~~~~~ +_write_bioxsd.cpp: In function 'std::auto_ptr _get_bxScore(const freecontact::contact_t&, const string&)': +_write_bioxsd.cpp:201:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 201 | auto_ptr MI_score_p(new BioXSD::Score( bo::str(bo::format("%g") % __ct.score) )); + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, + from /usr/include/boost/function/function_base.hpp:16, + from /usr/include/boost/function/detail/prologue.hpp:17, + from /usr/include/boost/function/function_template.hpp:13, + from /usr/include/boost/function/detail/maybe_include.hpp:22, + from /usr/include/boost/function/function1.hpp:11, + from /usr/include/boost/program_options/value_semantic.hpp:13, + from /usr/include/boost/program_options/options_description.hpp:13, + from /usr/include/boost/program_options.hpp:15, + from freecontact.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/locale_conv.h:41, + from /usr/include/c++/10/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignmentOfReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:19177:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 19177 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -15117,10 +15533,26 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + 169 | ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:19186:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 19186 | ::std::auto_ptr< gap_type > r ( | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, + from /usr/include/boost/function/function_base.hpp:16, + from /usr/include/boost/function/detail/prologue.hpp:17, + from /usr/include/boost/function/function_template.hpp:13, + from /usr/include/boost/function/detail/maybe_include.hpp:22, + from /usr/include/boost/function/function1.hpp:11, + from /usr/include/boost/program_options/value_semantic.hpp:13, + from /usr/include/boost/program_options/options_description.hpp:13, + from /usr/include/boost/program_options.hpp:15, + from freecontact.cpp:17: +/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here + 57 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/10/memory:83, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: @@ -15584,404 +16016,7 @@ /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] - 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> - | ^ -In file included from freecontact.cpp:25: -../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 113 | ali_t& push(const std::vector& __al) throw (alilen_error); - | ^~~~~ -../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 116 | inline ali_t& push(const std::string& __l) throw (alilen_error) - | ^~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': -../lib/freecontact.h:80:79: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] - 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) - | ^ -In file included from freecontact.cpp:25: -../lib/freecontact.h: At global scope: -../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 185 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - | ^~~~~ -../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 219 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - | ^~~~~ -../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 227 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - | ^~~~~ -../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 234 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) - | ^~~~~ -freecontact.cpp: In function 'int main(int, char**)': -freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 165 | auto_ptr ali_ifs_p; - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/boost/function/function_base.hpp:16, - from /usr/include/boost/function/detail/prologue.hpp:17, - from /usr/include/boost/function/function_template.hpp:13, - from /usr/include/boost/function/detail/maybe_include.hpp:22, - from /usr/include/boost/function/function1.hpp:11, - from /usr/include/boost/program_options/value_semantic.hpp:13, - from /usr/include/boost/program_options/options_description.hpp:13, - from /usr/include/boost/program_options.hpp:15, - from freecontact.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 169 | ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); - | ^~~~~~~~ -In file included from /usr/include/c++/10/memory:83, - from /usr/include/boost/function/function_base.hpp:16, - from /usr/include/boost/function/detail/prologue.hpp:17, - from /usr/include/boost/function/function_template.hpp:13, - from /usr/include/boost/function/detail/maybe_include.hpp:22, - from /usr/include/boost/function/function1.hpp:11, - from /usr/include/boost/program_options/value_semantic.hpp:13, - from /usr/include/boost/program_options/options_description.hpp:13, - from /usr/include/boost/program_options.hpp:15, - from freecontact.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:22: -../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] - 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> - | ^ -In file included from _write_bioxsd.cpp:22: -../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 113 | ali_t& push(const std::vector& __al) throw (alilen_error); - | ^~~~~ -../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 116 | inline ali_t& push(const std::string& __l) throw (alilen_error) - | ^~~~~ -In file included from _write_bioxsd.cpp:22: -../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': -../lib/freecontact.h:80:79: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] - 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) - | ^ -In file included from _write_bioxsd.cpp:22: -../lib/freecontact.h: At global scope: -../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 185 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - | ^~~~~ -../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 219 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - | ^~~~~ -../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 227 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - | ^~~~~ -../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 234 | ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) - | ^~~~~ -_write_bioxsd.cpp:30:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 30 | auto_ptr _get_bxScore(const fc::contact_t& __ct, const std::string& __scid); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp: In function 'std::string _xml_flatali(std::istream&, bool)': -_write_bioxsd.cpp:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 38 | auto_ptr xml( fix::alignment(__is) ); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp: In function 'void _write_bioxsd(const freecontact::ali_t&, const resn_mapper_t&, const std::map, std::vector >&, bool)': -_write_bioxsd.cpp:53:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 53 | auto_ptr seqSeg_p(new BioXSD::SequenceSegment()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:56:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 56 | auto_ptr seqPos_p(new BioXSD::SequencePosition()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:59:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 59 | auto_ptr seqRef_p(new BioXSD::SequenceReference()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:63:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 63 | auto_ptr seqRec_p( new BioXSD::GeneralAminoacidSequenceRecord( BioXSD::GeneralAminoacidSequence( ucq ))); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 67 | auto_ptr refSeq_p(new BioXSD::referenceSequence()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 73 | auto_ptr metCatCon_p(new BioXSD::SemanticConcept()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:79:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 79 | auto_ptr metCit_p(new BioXSD::EntryReference()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:82:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 82 | auto_ptr method_p(new BioXSD::method1("freecontact", "M#fc")); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:86:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 86 | auto_ptr sc_l1_p(new BioXSD::scoreType("S#l1")); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:88:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 88 | auto_ptr metCit_p(new BioXSD::EntryReference()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:94:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 94 | auto_ptr method_p(new BioXSD::Method("l1-norm")); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:100:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 100 | auto_ptr sc_MI_p(new BioXSD::scoreType("S#MI")); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 102 | auto_ptr metCit_p(new BioXSD::EntryReference()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 108 | auto_ptr method_p(new BioXSD::Method("Mutual information")); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:114:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 114 | auto_ptr sc_fr_p(new BioXSD::scoreType("S#fr")); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:116:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 116 | auto_ptr metCit_p(new BioXSD::EntryReference()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:122:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 122 | auto_ptr method_p(new BioXSD::Method("Frobenius norm")); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:128:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 128 | auto_ptr featCon_p(new BioXSD::SemanticConcept()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:135:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 135 | auto_ptr feat_p(new BioXSD::FeatureType()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:139:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 139 | auto_ptr cref_p(new BioXSD::condensedReferences1()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:142:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 142 | auto_ptr ann_p(new BioXSD::annotation1(feat_p)); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:156:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 156 | auto_ptr pt1_p(new BioXSD::SequencePoint()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:158:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 158 | auto_ptr pt2_p(new BioXSD::SequencePoint()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:161:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 161 | auto_ptr pos_p(new BioXSD::SequencePosition()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:165:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 165 | auto_ptr occ_p(new BioXSD::occurrence()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:177:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 177 | auto_ptr occRef_p(new BioXSD::blockWithOccurrenceReferences()); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp: At global scope: -_write_bioxsd.cpp:199:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 199 | auto_ptr _get_bxScore( const fc::contact_t& __ct, const std::string& __scid ) - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp: In function 'std::auto_ptr _get_bxScore(const freecontact::contact_t&, const string&)': -_write_bioxsd.cpp:201:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - 201 | auto_ptr MI_score_p(new BioXSD::Score( bo::str(bo::format("%g") % __ct.score) )); - | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/locale_conv.h:41, - from /usr/include/c++/10/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here - 57 | template class auto_ptr; - | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la libtool: link: g++ -fopenmp -g -O2 -fdebug-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -L/usr/lib -lboost_program_options -lxerces-c ../lib/.libs/libfreecontact.so -pthread -fopenmp make[2]: Leaving directory '/build/reproducible-path/freecontact-1.0.21/src' make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21' @@ -15989,7 +16024,7 @@ make[2]: Leaving directory '/build/reproducible-path/freecontact-1.0.21' make[1]: Leaving directory '/build/reproducible-path/freecontact-1.0.21' dh_auto_test - make -j20 check VERBOSE=1 + make -j42 check VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/freecontact-1.0.21' Making check in lib make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' @@ -16031,7 +16066,7 @@ make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' make[3]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' /bin/mkdir -p '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfreecontact.so.0.0.0 /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.so.0.0.0 libtool: install: (cd /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so.0 || { rm -f libfreecontact.so.0 && ln -s libfreecontact.so.0.0.0 libfreecontact.so.0; }; }) libtool: install: (cd /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so || { rm -f libfreecontact.so && ln -s libfreecontact.so.0.0.0 libfreecontact.so; }; }) @@ -16048,7 +16083,7 @@ make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/src' make[3]: Entering directory '/build/reproducible-path/freecontact-1.0.21/src' /bin/mkdir -p '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c freecontact '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c freecontact '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin' libtool: warning: '../lib/libfreecontact.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/freecontact /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin/freecontact /bin/mkdir -p '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/share/doc/freecontact/examples' @@ -16149,12 +16184,12 @@ make[1]: Leaving directory '/build/reproducible-path/freecontact-1.0.21' dh_md5sums dh_builddeb +dpkg-deb: building package 'freecontact' in '../freecontact_1.0.21-9_amd64.deb'. dpkg-deb: building package 'freecontact-dbgsym' in '../freecontact-dbgsym_1.0.21-9_amd64.deb'. dpkg-deb: building package 'libfreecontact0v5' in '../libfreecontact0v5_1.0.21-9_amd64.deb'. -dpkg-deb: building package 'freecontact' in '../freecontact_1.0.21-9_amd64.deb'. -dpkg-deb: building package 'libfreecontact-doc' in '../libfreecontact-doc_1.0.21-9_all.deb'. dpkg-deb: building package 'libfreecontact0v5-dbgsym' in '../libfreecontact0v5-dbgsym_1.0.21-9_amd64.deb'. dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-9_amd64.deb'. +dpkg-deb: building package 'libfreecontact-doc' in '../libfreecontact-doc_1.0.21-9_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../freecontact_1.0.21-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -16162,12 +16197,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3685732/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3685732/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2396923 and its subdirectories -I: Current time: Tue Jul 16 07:26:26 -12 2024 -I: pbuilder-time-stamp: 1721157986 +I: removing directory /srv/workspace/pbuilder/3685732 and its subdirectories +I: Current time: Tue Aug 19 15:52:39 +14 2025 +I: pbuilder-time-stamp: 1755568359