Diff of the two buildlogs: -- --- b1/build.log 2024-08-09 13:56:40.912625064 +0000 +++ b2/build.log 2024-08-09 13:59:47.484691263 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Aug 9 01:34:35 -12 2024 -I: pbuilder-time-stamp: 1723210475 +I: Current time: Fri Sep 12 10:19:43 +14 2025 +I: pbuilder-time-stamp: 1757621983 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./gkl_0.8.7+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.IqrYk19W/trustedkeys.kbx': General error -gpgv: Signature made Tue Jan 5 06:32:49 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.MTcMQIFV/trustedkeys.kbx': General error +gpgv: Signature made Wed Jan 6 08:32:49 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gkl_0.8.7+dfsg-1.dsc @@ -29,135 +29,166 @@ dpkg-source: info: applying fix_debian_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1243683/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1688273/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 12 10:19 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1688273/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1688273/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=20 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=42 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2982e30e587448cdab4080e08d061b63' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1243683' - PS1='# ' - PS2='> ' + INVOCATION_ID=3cc85cc555db45239ae2c1d896deb04b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1688273 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sacXHBmc/pbuilderrc_Jm82 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sacXHBmc/b1 --logfile b1/build.log gkl_0.8.7+dfsg-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sacXHBmc/pbuilderrc_59am --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sacXHBmc/b2 --logfile b2/build.log gkl_0.8.7+dfsg-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.9.7+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1~bpo12+1 (2024-07-03) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Mar 27 22:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Mar 27 22:09 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Mar 27 22:09 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Mar 27 22:09 more - -rwsr-xr-x 1 root root 55528 Mar 27 22:09 mount - -rwxr-xr-x 1 root root 18664 Mar 27 22:09 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 6 21:26 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Mar 27 22:09 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Jan 19 2024 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Mar 27 22:09 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Mar 27 22:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1243683/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Mar 29 2024 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Mar 29 2024 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Mar 29 2024 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Mar 29 2024 more + -rwsr-xr-x 1 root root 55528 Mar 29 2024 mount + -rwxr-xr-x 1 root root 18664 Mar 29 2024 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Sep 12 10:19 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Mar 29 2024 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Jan 20 2024 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Mar 29 2024 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Mar 29 2024 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1688273/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -563,7 +594,7 @@ Get: 344 http://deb.debian.org/debian bullseye/main amd64 liblog4j2-java all 2.17.1-1~deb11u1 [2081 kB] Get: 345 http://deb.debian.org/debian bullseye/main amd64 yasm amd64 1.3.0-2.1 [409 kB] Get: 346 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] -Fetched 306 MB in 18s (17.3 MB/s) +Fetched 306 MB in 8s (39.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) @@ -1981,135 +2012,135 @@ Setting up javahelper (0.78) ... Setting up ca-certificates-java (20190909+deb11u1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory -Adding debian:Network_Solutions_Certificate_Authority.pem +Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem +Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem -Adding debian:USERTrust_ECC_Certification_Authority.pem -Adding debian:QuoVadis_Root_CA_3_G3.pem -Adding debian:GTS_Root_R1.pem +Adding debian:Amazon_Root_CA_2.pem +Adding debian:Actalis_Authentication_Root_CA.pem +Adding debian:AffirmTrust_Networking.pem +Adding debian:Buypass_Class_2_Root_CA.pem +Adding debian:DigiCert_Global_Root_G3.pem +Adding debian:QuoVadis_Root_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem -Adding debian:emSign_Root_CA_-_C1.pem -Adding debian:Security_Communication_RootCA2.pem -Adding debian:Hongkong_Post_Root_CA_3.pem -Adding debian:Amazon_Root_CA_4.pem -Adding debian:certSIGN_ROOT_CA.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GlobalSign_Root_CA_-_R6.pem -Adding debian:T-TeleSec_GlobalRoot_Class_3.pem -Adding debian:ePKI_Root_Certification_Authority.pem -Adding debian:Entrust_Root_Certification_Authority.pem -Adding debian:QuoVadis_Root_CA.pem -Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem -Adding debian:ACCVRAIZ1.pem -Adding debian:COMODO_Certification_Authority.pem -Adding debian:Hongkong_Post_Root_CA_1.pem -Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem -Adding debian:Amazon_Root_CA_2.pem -Adding debian:Certum_Trusted_Network_CA_2.pem -Adding debian:TrustCor_RootCert_CA-2.pem -Adding debian:QuoVadis_Root_CA_3.pem +Adding debian:Izenpe.com.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem -Adding debian:GlobalSign_Root_CA_-_R2.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem -Adding debian:Certigna.pem +Adding debian:Hongkong_Post_Root_CA_1.pem +Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem +Adding debian:SSL.com_Root_Certification_Authority_ECC.pem +Adding debian:TrustCor_ECA-1.pem Adding debian:Secure_Global_CA.pem -Adding debian:Buypass_Class_2_Root_CA.pem -Adding debian:Sonera_Class_2_Root_CA.pem +Adding debian:USERTrust_ECC_Certification_Authority.pem +Adding debian:SwissSign_Silver_CA_-_G2.pem +Adding debian:emSign_Root_CA_-_G1.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem +Adding debian:GTS_Root_R1.pem +Adding debian:DST_Root_CA_X3.pem Adding debian:Amazon_Root_CA_3.pem -Adding debian:Security_Communication_Root_CA.pem -Adding debian:Buypass_Class_3_Root_CA.pem -Adding debian:QuoVadis_Root_CA_2_G3.pem -Adding debian:COMODO_ECC_Certification_Authority.pem -Adding debian:Trustwave_Global_Certification_Authority.pem -Adding debian:IdenTrust_Commercial_Root_CA_1.pem -Adding debian:TWCA_Root_Certification_Authority.pem +Adding debian:GTS_Root_R2.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem +Adding debian:Comodo_AAA_Services_root.pem +Adding debian:QuoVadis_Root_CA_3.pem +Adding debian:ePKI_Root_Certification_Authority.pem +Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem +Adding debian:USERTrust_RSA_Certification_Authority.pem +Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:AffirmTrust_Commercial.pem -Adding debian:SwissSign_Gold_CA_-_G2.pem -Adding debian:Chambers_of_Commerce_Root_-_2008.pem +Adding debian:UCA_Global_G2_Root.pem +Adding debian:Certigna_Root_CA.pem +Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:GTS_Root_R3.pem Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:Starfield_Class_2_CA.pem +Adding debian:TrustCor_RootCert_CA-2.pem +Adding debian:Certum_Trusted_Network_CA_2.pem +Adding debian:QuoVadis_Root_CA_2_G3.pem +Adding debian:certSIGN_ROOT_CA.pem +Adding debian:NAVER_Global_Root_Certification_Authority.pem +Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem -Adding debian:QuoVadis_Root_CA_1_G3.pem -Adding debian:SZAFIR_ROOT_CA2.pem -Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem -Adding debian:GTS_Root_R3.pem -Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem -Adding debian:CFCA_EV_ROOT.pem -Adding debian:COMODO_RSA_Certification_Authority.pem -Adding debian:emSign_ECC_Root_CA_-_G3.pem +Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Cybertrust_Global_Root.pem -Adding debian:emSign_ECC_Root_CA_-_C3.pem -Adding debian:Go_Daddy_Class_2_CA.pem -Adding debian:QuoVadis_Root_CA_2.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem -Adding debian:Baltimore_CyberTrust_Root.pem -Adding debian:ISRG_Root_X1.pem -Adding debian:VeriSign_Universal_Root_Certification_Authority.pem -Adding debian:AC_RAIZ_FNMT-RCM.pem -Adding debian:SwissSign_Silver_CA_-_G2.pem -Adding debian:SecureSign_RootCA11.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem +Adding debian:Certigna.pem +Adding debian:Buypass_Class_3_Root_CA.pem +Adding debian:T-TeleSec_GlobalRoot_Class_2.pem +Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA.pem -Adding debian:DigiCert_Trusted_Root_G4.pem -Adding debian:Izenpe.com.pem -Adding debian:Comodo_AAA_Services_root.pem -Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem -Adding debian:CA_Disig_Root_R2.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem +Adding debian:Chambers_of_Commerce_Root_-_2008.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem +Adding debian:CFCA_EV_ROOT.pem +Adding debian:SecureTrust_CA.pem +Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem -Adding debian:NAVER_Global_Root_Certification_Authority.pem +Adding debian:AC_RAIZ_FNMT-RCM.pem +Adding debian:Security_Communication_Root_CA.pem +Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem +Adding debian:ACCVRAIZ1.pem +Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem +Adding debian:COMODO_Certification_Authority.pem +Adding debian:ISRG_Root_X1.pem +Adding debian:emSign_ECC_Root_CA_-_G3.pem +Adding debian:AffirmTrust_Premium.pem +Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem +Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:EC-ACC.pem -Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem -Adding debian:DST_Root_CA_X3.pem -Adding debian:GTS_Root_R2.pem -Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem -Adding debian:UCA_Global_G2_Root.pem +Adding debian:emSign_Root_CA_-_C1.pem +Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem +Adding debian:QuoVadis_Root_CA_2.pem Adding debian:AffirmTrust_Premium_ECC.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem -Adding debian:Actalis_Authentication_Root_CA.pem -Adding debian:emSign_Root_CA_-_G1.pem -Adding debian:UCA_Extended_Validation_Root.pem -Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem -Adding debian:Amazon_Root_CA_1.pem -Adding debian:DigiCert_Global_Root_G3.pem -Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:Go_Daddy_Class_2_CA.pem +Adding debian:Network_Solutions_Certificate_Authority.pem +Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:E-Tugra_Certification_Authority.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem -Adding debian:Certigna_Root_CA.pem -Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem -Adding debian:GlobalSign_Root_CA_-_R3.pem +Adding debian:SecureSign_RootCA11.pem +Adding debian:Trustis_FPS_Root_CA.pem +Adding debian:Amazon_Root_CA_1.pem +Adding debian:Baltimore_CyberTrust_Root.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem +Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem +Adding debian:VeriSign_Universal_Root_Certification_Authority.pem +Adding debian:T-TeleSec_GlobalRoot_Class_3.pem +Adding debian:Security_Communication_RootCA2.pem +Adding debian:TWCA_Global_Root_CA.pem +Adding debian:CA_Disig_Root_R2.pem +Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Certum_Trusted_Network_CA.pem +Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:DigiCert_Global_Root_CA.pem -Adding debian:SSL.com_Root_Certification_Authority_ECC.pem -Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem -Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem -Adding debian:Microsec_e-Szigno_Root_CA_2009.pem -Adding debian:DigiCert_Assured_ID_Root_CA.pem -Adding debian:GTS_Root_R4.pem -Adding debian:AffirmTrust_Premium.pem -Adding debian:GDCA_TrustAUTH_R5_ROOT.pem -Adding debian:Starfield_Class_2_CA.pem +Adding debian:QuoVadis_Root_CA_3_G3.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem +Adding debian:COMODO_ECC_Certification_Authority.pem +Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:e-Szigno_Root_CA_2017.pem -Adding debian:SecureTrust_CA.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem -Adding debian:XRamp_Global_CA_Root.pem -Adding debian:AffirmTrust_Networking.pem -Adding debian:T-TeleSec_GlobalRoot_Class_2.pem -Adding debian:TeliaSonera_Root_CA_v1.pem +Adding debian:GlobalSign_Root_CA_-_R2.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem +Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:certSIGN_Root_CA_G2.pem -Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem -Adding debian:USERTrust_RSA_Certification_Authority.pem -Adding debian:TWCA_Global_Root_CA.pem -Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem -Adding debian:SSL.com_Root_Certification_Authority_RSA.pem -Adding debian:TrustCor_ECA-1.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem +Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Atos_TrustedRoot_2011.pem -Adding debian:TrustCor_RootCert_CA-1.pem -Adding debian:Trustis_FPS_Root_CA.pem +Adding debian:IdenTrust_Commercial_Root_CA_1.pem +Adding debian:Amazon_Root_CA_4.pem +Adding debian:Sonera_Class_2_Root_CA.pem +Adding debian:Trustwave_Global_Certification_Authority.pem +Adding debian:XRamp_Global_CA_Root.pem Adding debian:DigiCert_Global_Root_G2.pem +Adding debian:Microsec_e-Szigno_Root_CA_2009.pem +Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem -Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:TrustCor_RootCert_CA-1.pem +Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:GTS_Root_R4.pem +Adding debian:emSign_ECC_Root_CA_-_C3.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem +Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem done. Setting up junit4 (4.13.1-2) ... Setting up liblwp-protocol-https-perl (6.10-1) ... @@ -2151,7 +2182,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gkl-0.8.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gkl_0.8.7+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/1688273/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/1688273/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gkl-0.8.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gkl_0.8.7+dfsg-1_source.changes dpkg-buildpackage: info: source package gkl dpkg-buildpackage: info: source version 0.8.7+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2202,23 +2237,23 @@ dh_auto_build -- jar mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gkl -Dfile.encoding=UTF-8 --parallel --max-workers=20 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gkl -Dfile.encoding=UTF-8 --parallel --max-workers=42 jar Initialized native services in: /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-11-openjdk-amd64/bin/java -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 9.748 secs. -The client will now receive all logging from the daemon (pid: 1371697). The daemon log file: /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/daemon/4.4.1/daemon-1371697.out.log +An attempt to start the daemon took 0.79 secs. +The client will now receive all logging from the daemon (pid: 1740916). The daemon log file: /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/daemon/4.4.1/daemon-1740916.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 20 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@74c70372 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@74c70372 -Creating new cache for fileHashes, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@72e848d8 +Using 42 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@72fcb3b6 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@72fcb3b6 +Creating new cache for fileHashes, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@83378f4 Starting Build Compiling initialization script '/build/reproducible-path/gkl-0.8.7+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@19cd4d21 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@504ffb7c Compiling initialization script '/build/reproducible-path/gkl-0.8.7+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/gkl-0.8.7+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/gkl-0.8.7+dfsg/settings.gradle) @@ -2237,15 +2272,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@49c995a8 +Creating new cache for annotation-processors, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@68f30f2 Tasks to be executed: [task ':compileJava', task ':cmakeConfig', task ':cmakeBuild', task ':copyNativeLib', task ':buildOnMac', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@72e848d8 -Creating new cache for taskHistory, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@4e4066b -Creating new cache for outputFiles, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@2c1b5571 -:compileJava (Thread[Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@83378f4 +Creating new cache for taskHistory, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@46c3fc07 +Creating new cache for outputFiles, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7edcb994 +:compileJava (Thread[Task worker for ':' Thread 8,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.038 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@7e916242 +Putting task artifact state for task ':compileJava' into context took 0.003 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gkl-0.8.7+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@776c6f16 Loading the Maven rules... Replacing commons-io:commons-io:jar:2.4 -> commons-io:commons-io:jar:debian Passing through org.apache.commons:commons-parent:jar:debian @@ -2261,23 +2296,23 @@ Passing through org.apache.commons:commons-compress:jar:debian Passing through org.tukaani:xz:jar:debian Passing through gov.nih.nlm.ncbi:ngs-java:jar:debian -Up-to-date check for task ':compileJava' took 6.289 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 0.836 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[Task worker for ':',5,main]) completed. Took 14.233 secs. -:cmakeConfig (Thread[Task worker for ':',5,main]) started. +:compileJava (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 1.718 secs. +:cmakeConfig (Thread[Task worker for ':' Thread 8,5,main]) started. :cmakeConfig Putting task artifact state for task ':cmakeConfig' into context took 0.0 secs. -Up-to-date check for task ':cmakeConfig' took 0.471 secs. It is not up-to-date because: +Up-to-date check for task ':cmakeConfig' took 0.046 secs. It is not up-to-date because: No history is available. Starting process 'command 'cmake''. Working directory: /build/reproducible-path/gkl-0.8.7+dfsg/build/native Command: cmake -Wno-dev /build/reproducible-path/gkl-0.8.7+dfsg Successfully started process 'command 'cmake'' -:cmakeConfig (Thread[Task worker for ':',5,main]) completed. Took 11.033 secs. -:cmakeBuild (Thread[Task worker for ':',5,main]) started. +:cmakeConfig (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 1.16 secs. +:cmakeBuild (Thread[Task worker for ':' Thread 8,5,main]) started. :cmakeBuild -Putting task artifact state for task ':cmakeBuild' into context took 0.071 secs. -Up-to-date check for task ':cmakeBuild' took 0.006 secs. It is not up-to-date because: +Putting task artifact state for task ':cmakeBuild' into context took 0.003 secs. +Up-to-date check for task ':cmakeBuild' took 0.0 secs. It is not up-to-date because: Task.upToDateWhen is false. Starting process 'command 'make''. Working directory: /build/reproducible-path/gkl-0.8.7+dfsg/build/native Command: make install Successfully started process 'command 'make'' @@ -2288,44 +2323,43 @@ configure.ac:12: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' - Gradle is still running, please be patient... -:cmakeBuild (Thread[Task worker for ':',5,main]) completed. Took 10 mins 16.941 secs. +:cmakeBuild (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 1 mins 15.904 secs. :copyNativeLib (Thread[Task worker for ':' Thread 8,5,main]) started. :copyNativeLib Putting task artifact state for task ':copyNativeLib' into context took 0.0 secs. -Up-to-date check for task ':copyNativeLib' took 0.141 secs. It is not up-to-date because: +Up-to-date check for task ':copyNativeLib' took 0.013 secs. It is not up-to-date because: No history is available. -:copyNativeLib (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.374 secs. +:copyNativeLib (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.044 secs. :buildOnMac (Thread[Task worker for ':' Thread 8,5,main]) started. :buildOnMac Skipping task ':buildOnMac' as task onlyIf is false. :buildOnMac SKIPPED -:buildOnMac (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.049 secs. +:buildOnMac (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.009 secs. :processResources (Thread[Task worker for ':' Thread 8,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.018 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.001 secs. It is not up-to-date because: No history is available. -:processResources (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.053 secs. +:processResources (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.005 secs. :classes (Thread[Task worker for ':' Thread 8,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.001 secs. +:classes (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.0 secs. :debianMavenPom (Thread[Task worker for ':' Thread 8,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.008 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gkl-0.8.7+dfsg/build/debian/gkl.pom -:debianMavenPom (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.241 secs. +:debianMavenPom (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.028 secs. :jar (Thread[Task worker for ':' Thread 8,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.068 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.004 secs. It is not up-to-date because: No history is available. -:jar (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.95 secs. +:jar (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.189 secs. -BUILD SUCCESSFUL in 11m 30s +BUILD SUCCESSFUL in 1m 23s 7 actionable tasks: 7 executed make[1]: Leaving directory '/build/reproducible-path/gkl-0.8.7+dfsg' jh_build -O--buildsystem=gradle @@ -2336,92 +2370,92 @@ # (for example ',') env LC_ALL=C \ # disable unit tests waiting for testng fix in jcommander not found -DEB_HOST_GNU_SYSTEM=linux-gnu -SUDO_GID=111 -DFLAGS=-frelease -DEB_BUILD_ARCH_BITS=64 -DEB_TARGET_GNU_CPU=x86_64 -MAIL=/var/mail/root -DEB_HOST_ARCH_OS=linux -LANGUAGE=en_US:en -USER=pbuilder1 -CXXFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEB_BUILD_GNU_TYPE=x86_64-linux-gnu -BUILDUSERNAME=pbuilder1 -DEB_TARGET_MULTIARCH=x86_64-linux-gnu -OBJCFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DH_INTERNAL_OPTIONS=-O--buildsystem=gradle -DEB_BUILD_ARCH_CPU=amd64 -SHLVL=2 +SHELL=/bin/bash DEB_HOST_ARCH_LIBC=gnu -DEB_HOST_ARCH_ABI=base -OLDPWD=/ -BUILDUSERGECOS=first user,first room,first work-phone,first home-phone,first other -HOME=/nonexistent/first-build -DH_OPTIONS= -DEB_BUILD_ARCH_ENDIAN=little -LDFLAGS=-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -DEB_TARGET_ARCH_BITS=64 -DEB_BUILD_GNU_SYSTEM=linux-gnu -MAKEFLAGS=w -PBUILDER_OPERATION=build -DEB_BUILD_ARCH_OS=linux -DEB_TARGET_GNU_TYPE=x86_64-linux-gnu -SUDO_UID=106 -PBUILDER_PKGDATADIR=/usr/share/pbuilder +SUDO_GID=111 +DEB_TARGET_GNU_SYSTEM=linux-gnu +GCJFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong +DEB_HOST_MULTIARCH=x86_64-linux-gnu +LANGUAGE=et_EE:et DEB_TARGET_ARCH_CPU=amd64 -LOGNAME=pbuilder1 -DEB_BUILD_ARCH_LIBC=gnu -DEB_BUILD_ARCH_ABI=base -PBUILDER_SYSCONFDIR=/etc -_=/usr/bin/unshare -DEB_HOST_ARCH=amd64 -DEB_TARGET_ARCH_ENDIAN=little -TERM=unknown +BUILDUSERGECOS=second user,second room,second work-phone,second home-phone,second other +JAVA_HOME= DH_INTERNAL_OVERRIDE=dh_auto_test -DEB_HOST_GNU_CPU=x86_64 -DEB_TARGET_GNU_SYSTEM=linux-gnu -PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games -INVOCATION_ID=8abdb64e9f39417487837821b7a090bf +PBUILDER_PKGLIBDIR=/usr/lib/pbuilder ANT_HOME=/usr/share/ant -DEB_TARGET_ARCH_OS=linux -CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -MAKELEVEL=2 -DEB_HOST_MULTIARCH=x86_64-linux-gnu +SUDO_COMMAND=/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sacXHBmc/pbuilderrc_59am --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sacXHBmc/b2 --logfile b2/build.log gkl_0.8.7+dfsg-1.dsc +SUDO_USER=jenkins +DEB_TARGET_ARCH_BITS=64 +FFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong +PBUILDER_SYSCONFDIR=/etc +PWD=/build/reproducible-path/gkl-0.8.7+dfsg +DEB_BUILD_MULTIARCH=x86_64-linux-gnu SOURCE_DATE_EPOCH=1609870329 -FCFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -OBJCXXFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -LANG=C -DH_VERBOSE=1 +LOGNAME=pbuilder2 +DEB_HOST_GNU_SYSTEM=linux-gnu +DEB_RULES_REQUIRES_ROOT=no +DEB_BUILD_ARCH_BITS=64 +CXXFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security +DEB_BUILD_ARCH_OS=linux +_=/usr/bin/env +TZ=/usr/share/zoneinfo/Etc/GMT-14 +BUILDUSERNAME=pbuilder2 LD_PRELOAD= +LDFLAGS=-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now +HOME=/nonexistent/second-build +LANG=C +DEB_HOST_ARCH_ABI=base DEB_TARGET_ARCH_LIBC=gnu +DEB_TARGET_GNU_TYPE=x86_64-linux-gnu DEB_TARGET_ARCH_ABI=base -PBUILDER_PKGLIBDIR=/usr/lib/pbuilder -DEB_BUILD_OPTIONS=buildinfo=+all reproducible=+all,-fixfilepath parallel=20 -SUDO_COMMAND=/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sacXHBmc/pbuilderrc_Jm82 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sacXHBmc/b1 --logfile b1/build.log gkl_0.8.7+dfsg-1.dsc CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2 -DEBIAN_FRONTEND=noninteractive -DH_INTERNAL_BUILDFLAGS=1 -SHELL=/bin/bash -DEB_HOST_ARCH_BITS=64 +INVOCATION_ID=71cfb137729a45b985aa87663da1e4e8 +DEB_TARGET_ARCH=amd64 +DH_VERBOSE=1 DEB_BUILD_ARCH=amd64 -SUDO_USER=jenkins +PBCURRENTCOMMANDLINEOPERATION=build +PBUILDER_PKGDATADIR=/usr/share/pbuilder +DEB_TARGET_ARCH_OS=linux +MFLAGS=-w +PBUILDER_OPERATION=build +FCFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong +MAKEFLAGS=w +TERM=unknown +DEB_TARGET_MULTIARCH=x86_64-linux-gnu +DEB_BUILD_ARCH_CPU=amd64 +DEB_BUILD_ARCH_LIBC=gnu +OBJCFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security +USER=pbuilder2 +DEB_HOST_ARCH_BITS=64 +DEB_BUILD_GNU_TYPE=x86_64-linux-gnu +DEB_BUILD_OPTIONS=buildinfo=+all reproducible=+all,-fixfilepath parallel=42 +SHLVL=3 +MAKELEVEL=2 +DEB_BUILD_GNU_SYSTEM=linux-gnu +DH_INTERNAL_OPTIONS=-O--buildsystem=gradle DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie -DEB_BUILD_GNU_CPU=x86_64 +DEB_TARGET_GNU_CPU=x86_64 +DEB_TARGET_ARCH_ENDIAN=little +DEB_HOST_ARCH=amd64 +DEB_HOST_ARCH_ENDIAN=little DEB_HOST_GNU_TYPE=x86_64-linux-gnu -JAVA_HOME= LC_ALL=C -PWD=/build/reproducible-path/gkl-0.8.7+dfsg +PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path +DEB_BUILD_ARCH_ENDIAN=little DEB_HOST_ARCH_CPU=amd64 -DEB_RULES_REQUIRES_ROOT=no -FFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -DEB_BUILD_MULTIARCH=x86_64-linux-gnu -MFLAGS=-w -TZ=/usr/share/zoneinfo/Etc/GMT+12 -GCJFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -PBCURRENTCOMMANDLINEOPERATION=build -DEB_HOST_ARCH_ENDIAN=little -DEB_TARGET_ARCH=amd64 +CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security +SUDO_UID=106 +OBJCXXFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gkl-0.8.7+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security +DH_OPTIONS= +MAIL=/var/mail/root +DFLAGS=-frelease +DEB_HOST_GNU_CPU=x86_64 +DEB_HOST_ARCH_OS=linux +DEB_BUILD_GNU_CPU=x86_64 +DEBIAN_FRONTEND=noninteractive +DEB_BUILD_ARCH_ABI=base +DH_INTERNAL_BUILDFLAGS=1 +OLDPWD=/ #dh_auto_build -- test make[1]: Leaving directory '/build/reproducible-path/gkl-0.8.7+dfsg' create-stamp debian/debhelper-build-stamp @@ -2505,10 +2539,10 @@ rm -f debian/libgkl-java/usr/share/maven-repo/com/intel/gkl/gkl/0.8.5/gkl-0.8.5.jar ln -s ../../../../../../java/gkl.jar debian/libgkl-java/usr/share/maven-repo/com/intel/gkl/gkl/0.8.5/gkl-0.8.5.jar dh_link -plibgkl-java /usr/share/javagkl.jar usr/share/maven-repo/com/intel/gkl/gkl/debian/gkl-debian.jar - rm -f debian/libgkl-java/usr/share/maven-repo/com/intel/gkl/gkl/0.8.5/gkl-0.8.5.jar - ln -s ../../../../../../java/gkl.jar debian/libgkl-java/usr/share/maven-repo/com/intel/gkl/gkl/0.8.5/gkl-0.8.5.jar rm -f debian/libgkl-java/usr/share/java/gkl.jar ln -s gkl-0.8.7.jar debian/libgkl-java/usr/share/java/gkl.jar + rm -f debian/libgkl-java/usr/share/maven-repo/com/intel/gkl/gkl/0.8.5/gkl-0.8.5.jar + ln -s ../../../../../../java/gkl.jar debian/libgkl-java/usr/share/maven-repo/com/intel/gkl/gkl/0.8.5/gkl-0.8.5.jar rm -f debian/libgkl-java/usr/share/maven-repo/com/intel/gkl/gkl/debian/gkl-debian.jar ln -s ../../../../../../java/gkl.jar debian/libgkl-java/usr/share/maven-repo/com/intel/gkl/gkl/debian/gkl-debian.jar dh_strip_nondeterminism -O--buildsystem=gradle @@ -2517,10 +2551,10 @@ dh_compress -O--buildsystem=gradle cd debian/libgkl-java cd debian/libgkl-jni - chmod a-x usr/share/doc/libgkl-jni/changelog.Debian chmod a-x usr/share/doc/libgkl-java/changelog.Debian - gzip -9nf usr/share/doc/libgkl-jni/changelog.Debian + chmod a-x usr/share/doc/libgkl-jni/changelog.Debian gzip -9nf usr/share/doc/libgkl-java/changelog.Debian + gzip -9nf usr/share/doc/libgkl-jni/changelog.Debian cd '/build/reproducible-path/gkl-0.8.7+dfsg' cd '/build/reproducible-path/gkl-0.8.7+dfsg' dh_fixperms -O--buildsystem=gradle @@ -2540,31 +2574,31 @@ dwz -mdebian/libgkl-jni/usr/lib/debug/.dwz/x86_64-linux-gnu/libgkl-jni.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/libgkl-jni.debug -- debian/libgkl-jni/usr/lib/jni/libgkl_compression.so debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm.so debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm_omp.so debian/libgkl-jni/usr/lib/jni/libgkl_smithwaterman.so debian/libgkl-jni/usr/lib/jni/libgkl_utils.so objcopy --compress-debug-sections debian/libgkl-jni/usr/lib/debug/.dwz/x86_64-linux-gnu/libgkl-jni.debug dh_strip -a -O--buildsystem=gradle - install -d debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/2b - objcopy --only-keep-debug --compress-debug-sections debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm_omp.so debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/2b/063046e40dd17dc069dcf53ffb7b56feac473a.debug - chmod 0644 -- debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/2b/063046e40dd17dc069dcf53ffb7b56feac473a.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm_omp.so - objcopy --add-gnu-debuglink debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/2b/063046e40dd17dc069dcf53ffb7b56feac473a.debug debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm_omp.so - install -d debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/15 - objcopy --only-keep-debug --compress-debug-sections debian/libgkl-jni/usr/lib/jni/libgkl_compression.so debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/15/11f1b4f5f32f8ba602fad5eb5956e3eff9ad58.debug - chmod 0644 -- debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/15/11f1b4f5f32f8ba602fad5eb5956e3eff9ad58.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libgkl-jni/usr/lib/jni/libgkl_compression.so - objcopy --add-gnu-debuglink debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/15/11f1b4f5f32f8ba602fad5eb5956e3eff9ad58.debug debian/libgkl-jni/usr/lib/jni/libgkl_compression.so + install -d debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/f6 + objcopy --only-keep-debug --compress-debug-sections debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm.so debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/f6/749128ccc4d96967e12ec4d2018a1383f305df.debug + chmod 0644 -- debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/f6/749128ccc4d96967e12ec4d2018a1383f305df.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm.so + objcopy --add-gnu-debuglink debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/f6/749128ccc4d96967e12ec4d2018a1383f305df.debug debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm.so install -d debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/libgkl-jni/usr/lib/jni/libgkl_utils.so debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/85/805da8f76cced0eeb0b9066930f81e9dfe9e82.debug chmod 0644 -- debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/85/805da8f76cced0eeb0b9066930f81e9dfe9e82.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libgkl-jni/usr/lib/jni/libgkl_utils.so objcopy --add-gnu-debuglink debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/85/805da8f76cced0eeb0b9066930f81e9dfe9e82.debug debian/libgkl-jni/usr/lib/jni/libgkl_utils.so + install -d debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/15 + objcopy --only-keep-debug --compress-debug-sections debian/libgkl-jni/usr/lib/jni/libgkl_compression.so debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/15/11f1b4f5f32f8ba602fad5eb5956e3eff9ad58.debug + chmod 0644 -- debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/15/11f1b4f5f32f8ba602fad5eb5956e3eff9ad58.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libgkl-jni/usr/lib/jni/libgkl_compression.so + objcopy --add-gnu-debuglink debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/15/11f1b4f5f32f8ba602fad5eb5956e3eff9ad58.debug debian/libgkl-jni/usr/lib/jni/libgkl_compression.so install -d debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/libgkl-jni/usr/lib/jni/libgkl_smithwaterman.so debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/cd/301edc31035fd72b566283f0f98ea3816f02e9.debug chmod 0644 -- debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/cd/301edc31035fd72b566283f0f98ea3816f02e9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libgkl-jni/usr/lib/jni/libgkl_smithwaterman.so objcopy --add-gnu-debuglink debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/cd/301edc31035fd72b566283f0f98ea3816f02e9.debug debian/libgkl-jni/usr/lib/jni/libgkl_smithwaterman.so - install -d debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/f6 - objcopy --only-keep-debug --compress-debug-sections debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm.so debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/f6/749128ccc4d96967e12ec4d2018a1383f305df.debug - chmod 0644 -- debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/f6/749128ccc4d96967e12ec4d2018a1383f305df.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm.so - objcopy --add-gnu-debuglink debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/f6/749128ccc4d96967e12ec4d2018a1383f305df.debug debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm.so + install -d debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/2b + objcopy --only-keep-debug --compress-debug-sections debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm_omp.so debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/2b/063046e40dd17dc069dcf53ffb7b56feac473a.debug + chmod 0644 -- debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/2b/063046e40dd17dc069dcf53ffb7b56feac473a.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm_omp.so + objcopy --add-gnu-debuglink debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.build-id/2b/063046e40dd17dc069dcf53ffb7b56feac473a.debug debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm_omp.so install -d debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libgkl-jni/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/libgkl-jni/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libgkl-jni/usr/lib/debug/.dwz @@ -2575,7 +2609,7 @@ rm -f debian/libgkl-jni/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=gradle install -d debian/libgkl-jni/DEBIAN - dpkg-shlibdeps -Tdebian/libgkl-jni.substvars debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm_omp.so debian/libgkl-jni/usr/lib/jni/libgkl_compression.so debian/libgkl-jni/usr/lib/jni/libgkl_utils.so debian/libgkl-jni/usr/lib/jni/libgkl_smithwaterman.so debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm.so + dpkg-shlibdeps -Tdebian/libgkl-jni.substvars debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm.so debian/libgkl-jni/usr/lib/jni/libgkl_utils.so debian/libgkl-jni/usr/lib/jni/libgkl_compression.so debian/libgkl-jni/usr/lib/jni/libgkl_smithwaterman.so debian/libgkl-jni/usr/lib/jni/libgkl_pairhmm_omp.so dh_installdeb -O--buildsystem=gradle install -d debian/libgkl-java/DEBIAN debian/rules override_dh_gencontrol @@ -2613,12 +2647,12 @@ cd debian/.debhelper/libgkl-jni/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libgkl-jni/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=gradle + dpkg-deb --root-owner-group --build debian/libgkl-java .. dpkg-deb --root-owner-group --build debian/libgkl-jni .. dpkg-deb --root-owner-group --build debian/.debhelper/libgkl-jni/dbgsym-root .. - dpkg-deb --root-owner-group --build debian/libgkl-java .. +dpkg-deb: building package 'libgkl-java' in '../libgkl-java_0.8.7+dfsg-1_all.deb'. dpkg-deb: building package 'libgkl-jni' in '../libgkl-jni_0.8.7+dfsg-1_amd64.deb'. dpkg-deb: building package 'libgkl-jni-dbgsym' in '../libgkl-jni-dbgsym_0.8.7+dfsg-1_amd64.deb'. -dpkg-deb: building package 'libgkl-java' in '../libgkl-java_0.8.7+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../gkl_0.8.7+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2626,12 +2660,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1688273/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1688273/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1243683 and its subdirectories -I: Current time: Fri Aug 9 01:56:39 -12 2024 -I: pbuilder-time-stamp: 1723211799 +I: removing directory /srv/workspace/pbuilder/1688273 and its subdirectories +I: Current time: Fri Sep 12 10:22:46 +14 2025 +I: pbuilder-time-stamp: 1757622166