Diff of the two buildlogs: -- --- b1/build.log 2024-08-06 17:04:44.621555751 +0000 +++ b2/build.log 2024-08-06 17:06:01.502289164 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Aug 6 05:02:13 -12 2024 -I: pbuilder-time-stamp: 1722963733 +I: Current time: Tue Sep 9 13:27:46 +14 2025 +I: pbuilder-time-stamp: 1757374066 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./libchado-perl_1.31-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.lUqc7iej/trustedkeys.kbx': General error -gpgv: Signature made Wed Dec 4 20:43:50 2019 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.PfP6Or8N/trustedkeys.kbx': General error +gpgv: Signature made Thu Dec 5 22:43:50 2019 +14 gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438 gpgv: issuer "osallou@debian.org" gpgv: Can't check signature: No public key @@ -37,135 +37,166 @@ dpkg-source: info: applying 0001-Sort-installed-configuration-file-for-reproducibilit.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2253953/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/642450/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 9 13:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/642450/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/642450/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=20 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=42 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4290dbf8abc140d19221fabb94e052b7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2253953' - PS1='# ' - PS2='> ' + INVOCATION_ID=3820334c08534dafbc7872e708c2cebc + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=642450 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AprlL9TR/pbuilderrc_Bop8 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AprlL9TR/b1 --logfile b1/build.log libchado-perl_1.31-6.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AprlL9TR/pbuilderrc_icD9 --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AprlL9TR/b2 --logfile b2/build.log libchado-perl_1.31-6.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.9.7+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1~bpo12+1 (2024-07-03) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Mar 27 22:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Mar 27 22:09 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Mar 27 22:09 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Mar 27 22:09 more - -rwsr-xr-x 1 root root 55528 Mar 27 22:09 mount - -rwxr-xr-x 1 root root 18664 Mar 27 22:09 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 6 21:26 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Mar 27 22:09 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Jan 19 2024 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Mar 27 22:09 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Mar 27 22:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/2253953/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Mar 29 2024 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Mar 29 2024 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Mar 29 2024 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Mar 29 2024 more + -rwsr-xr-x 1 root root 55528 Mar 29 2024 mount + -rwxr-xr-x 1 root root 18664 Mar 29 2024 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Sep 9 13:27 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Mar 29 2024 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Jan 20 2024 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Mar 29 2024 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Mar 29 2024 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/642450/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -437,7 +468,7 @@ Get: 192 http://deb.debian.org/debian bullseye/main amd64 libxslt1.1 amd64 1.1.34-4+deb11u1 [240 kB] Get: 193 http://deb.debian.org/debian bullseye/main amd64 libxml-libxslt-perl amd64 1.99-1+b1 [47.3 kB] Get: 194 http://deb.debian.org/debian bullseye/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] -Fetched 45.6 MB in 2s (25.2 MB/s) +Fetched 45.6 MB in 2s (24.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) @@ -1256,7 +1287,11 @@ fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/libchado-perl-1.31/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libchado-perl_1.31-6_source.changes +I: user script /srv/workspace/pbuilder/642450/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/642450/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libchado-perl-1.31/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libchado-perl_1.31-6_source.changes dpkg-buildpackage: info: source package libchado-perl dpkg-buildpackage: info: source version 1.31-6 dpkg-buildpackage: info: source distribution unstable @@ -1328,66 +1363,66 @@ -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- make[1]: Leaving directory '/build/reproducible-path/libchado-perl-1.31' dh_auto_build -O--buildsystem=perl_makemaker - make -j20 + make -j42 make[1]: Entering directory '/build/reproducible-path/libchado-perl-1.31' -Skip blib/lib/Bio/GMOD/Bulkfiles/FastaWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/BlastWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/MySplitLocation.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Adapter/FeatureIterator.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/Config2.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm (unchanged) -Skip blib/lib/Bio/GMOD/Load/GFF.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/FeatureWriter.pm (unchanged) -Skip blib/lib/Bio/Chado/Builder.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Adapter/Wormbase.pm (unchanged) -Skip blib/lib/Bio/GMOD/Config.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Tools/ETA.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Adapter.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/TableWriter.pm (unchanged) Skip blib/lib/Bio/FeatureIO/chado.pm (unchanged) -Skip blib/lib/Bio/GMOD/SeqUtils.pm (unchanged) -Skip blib/lib/Bio/Chado/AutoDBI.pm (unchanged) -Skip blib/lib/Bio/GMOD/Load.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Adapter/Wormbase.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/BulkWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Config.pm (unchanged) +Skip blib/lib/Bio/GMOD/SeqUtils.pm (unchanged) +Skip blib/lib/Bio/Chado/AutoDBI.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/FastaWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Config2.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Tools/ETA.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/GnomapWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/MySplitLocation.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Config.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Adapter.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Adapter/FeatureIterator.pm (unchanged) +Skip blib/lib/Bio/Chado/Config.pm (unchanged) +Skip blib/lib/Bio/Chado/Builder.pm (unchanged) +Skip blib/lib/Bio/GMOD/Config.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm (unchanged) +Skip blib/lib/Bio/GMOD/Load.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/AcodeWriter.pm (unchanged) -Skip blib/lib/Bio/Chado/Config.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/FeatureWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Load/GFF.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm (unchanged) Skip blib/lib/Bio/FeatureIO/chadobulk.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/TableWriter.pm (unchanged) "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" load/bin/bulk_load_gff3.PLS load/bin/gmod_bulk_load_gff3.pl "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" install_util/conf_install.PLS install_util/conf_install.pl Extracting conf_install.pl (with variable substitutions) "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" install_util/src_install.PLS install_util/src_install.pl Extracting src_install.pl (with variable substitutions) cp bin/gmod_add_organism.pl blib/script/gmod_add_organism.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_add_organism.pl cp bin/gmod_apollo_triggers.pl blib/script/gmod_apollo_triggers.pl cp load/bin/gmod_bulk_load_gff3.pl blib/script/gmod_bulk_load_gff3.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_add_organism.pl cp bin/gmod_bulk_load_pubmed.pl blib/script/gmod_bulk_load_pubmed.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_apollo_triggers.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_pubmed.pl cp bin/gmod_chado_properties.pl blib/script/gmod_chado_properties.pl cp bin/gmod_extract_dbxref_from_gff.pl blib/script/gmod_extract_dbxref_from_gff.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_chado_properties.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_extract_dbxref_from_gff.pl cp bin/gmod_fasta2gff3.pl blib/script/gmod_fasta2gff3.pl cp bin/gmod_gff3_preprocessor.pl blib/script/gmod_gff3_preprocessor.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_extract_dbxref_from_gff.pl +cp bin/gmod_load_cvterms.pl blib/script/gmod_load_cvterms.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_fasta2gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_gff3_preprocessor.pl -cp bin/gmod_load_cvterms.pl blib/script/gmod_load_cvterms.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_load_cvterms.pl cp bin/gmod_make_cvtermpath.pl blib/script/gmod_make_cvtermpath.pl cp bin/gmod_make_gff_from_dbxref.pl blib/script/gmod_make_gff_from_dbxref.pl -cp bin/gmod_materialized_view_tool.pl blib/script/gmod_materialized_view_tool.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_cvtermpath.pl +cp bin/gmod_materialized_view_tool.pl blib/script/gmod_materialized_view_tool.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_gff_from_dbxref.pl cp bin/gmod_sort_gff3.pl blib/script/gmod_sort_gff3.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_sort_gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_materialized_view_tool.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_sort_gff3.pl Manifying 12 pod documents Manifying 26 pod documents make[1]: Leaving directory '/build/reproducible-path/libchado-perl-1.31' @@ -1403,125 +1438,125 @@ dh_prep -O--buildsystem=perl_makemaker dh_installdirs -O--buildsystem=perl_makemaker dh_auto_install -O--buildsystem=perl_makemaker - make -j20 install DESTDIR=/build/reproducible-path/libchado-perl-1.31/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j42 install DESTDIR=/build/reproducible-path/libchado-perl-1.31/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libchado-perl-1.31' "/usr/bin/perl" "/build/reproducible-path/libchado-perl-1.31/install_util/conf_install.pl" 'GMOD_ROOT=/build/reproducible-path/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' 'VERSION=1.31' "/usr/bin/perl" "/build/reproducible-path/libchado-perl-1.31/install_util/src_install.pl" 'GMOD_ROOT=/build/reproducible-path/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' Manifying 12 pod documents Manifying 26 pod documents Appending installation info to /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/x86_64-linux-gnu-thread-multi/perllocal.pod -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/SeqUtils.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config2.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config2.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/SeqUtils.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Config.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/FeatureIterator.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/Wormbase.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Tools/ETA.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load/GFF.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BulkWriter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/TableWriter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BulkWriter.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BlastWriter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GnomapWriter.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FastaWriter.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FeatureWriter.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MySplitLocation.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/AcodeWriter.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FeatureWriter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load/GFF.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BlastWriter.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MySplitLocation.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FastaWriter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/AutoDBI.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Builder.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Config.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chado.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chadobulk.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_cvtermpath.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_gff_from_dbxref.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_fasta2gff3.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_pubmed.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chado.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_gff3.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_chado_properties.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_sort_gff3.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_gff3_preprocessor.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_add_organism.pl.1p Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_load_cvterms.pl.1p Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_materialized_view_tool.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_sort_gff3.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_gff_from_dbxref.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_gff3_preprocessor.pl.1p Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_extract_dbxref_from_gff.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::SWISS_CRC64.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GenbankSubmitWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Tools::ETA.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_chado_properties.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_fasta2gff3.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_cvtermpath.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_add_organism.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_pubmed.pl.1p Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MySplitLocation.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::Wormbase.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FastaWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Builder.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BulkWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FeatureWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Tools::ETA.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::AcodeWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MyLargePrimarySeq.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chado.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Config.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load::GFF.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BlastWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::TableWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Config.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::SWISS_CRC64.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Config.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::Wormbase.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chado.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chadobulk.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FeatureWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::FeatureIterator.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BulkWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GnomapWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load::GFF.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::SeqUtils.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Config.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FastaWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MyLargePrimarySeq.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config2.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff2biomart5.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_fasta2gff3.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create_so_bridge_command -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_update_chado.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_cvtermpath.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/dbi.tt2 -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/load_taxonomy_cvterms.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create-bridge-sql.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_genes2gff.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.sh +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::SeqUtils.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::FeatureIterator.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GenbankSubmitWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GnomapWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::TableWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Builder.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz_svg.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_sort_gff3.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gencode2sql.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_partial_indexes.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_load_cvterms.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/test_load.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/chado-fix-flybase-instance.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/chado-build-schema.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/addcascades -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/test_load.sh +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create-bridge-sql.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_pubmed.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz_svg.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/Skip_tables.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_materialized_view_tool.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_fasta2gff3.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/load_ncbi_taxonomy.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/test_load.sh +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/interactions2SIF.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff3_preprocessor.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_gff3.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/addcascades Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/config.PLS -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulkfiles.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/privileges.tmpl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ddltrans Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_gff_from_dbxref.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/test_load.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi_viaTT.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2html.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_snp2gff.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/Skip_tables.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_extract_dbxref_from_gff.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create-so-bridge.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_partial_indexes.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_sort_gff3.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff3_preprocessor.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_dump_gff3.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ddltrans -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_materialized_view_tool.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_gff3.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/interactions2SIF.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/load_ncbi_taxonomy.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_apollo_triggers.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2diagram.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/GMODCallHome.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_snp2gff.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_load_cvterms.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_apollo_triggers.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/load_taxonomy_cvterms.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_add_organism.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/chado-build-schema.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/AutoDBI.PL -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2html.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2diagram.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_chado_properties.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gencode2sql.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulkfiles.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_update_chado.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_dump_gff3.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create_so_bridge_command +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff2biomart5.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.sh +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/dbi.tt2 +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_genes2gff.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/privileges.tmpl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_extract_dbxref_from_gff.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_cvtermpath.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create-so-bridge.pl make[1]: Leaving directory '/build/reproducible-path/libchado-perl-1.31' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libchado-perl-1.31' @@ -1602,12 +1637,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/642450/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/642450/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2253953 and its subdirectories -I: Current time: Tue Aug 6 05:04:43 -12 2024 -I: pbuilder-time-stamp: 1722963883 +I: removing directory /srv/workspace/pbuilder/642450 and its subdirectories +I: Current time: Tue Sep 9 13:29:00 +14 2025 +I: pbuilder-time-stamp: 1757374140