Diff of the two buildlogs: -- --- b1/build.log 2024-08-06 17:29:39.206036571 +0000 +++ b2/build.log 2024-08-06 17:30:22.048215362 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Aug 6 05:28:16 -12 2024 -I: pbuilder-time-stamp: 1722965296 +I: Current time: Tue Sep 9 13:52:41 +14 2025 +I: pbuilder-time-stamp: 1757375561 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./lucy_1.20-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.LQ6INTYD/trustedkeys.kbx': General error -gpgv: Signature made Sun Apr 19 04:58:04 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.uiqLvxKJ/trustedkeys.kbx': General error +gpgv: Signature made Mon Apr 20 06:58:04 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,135 +31,166 @@ dpkg-source: info: applying spellings.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/281839/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/938040/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 9 13:52 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/938040/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/938040/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=20 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=42 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='50df5e38eef24147bcdffe2468be3c39' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='281839' - PS1='# ' - PS2='> ' + INVOCATION_ID=c5eeab709e344b2d9e46366dc34711a6 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=938040 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QRpz6G42/pbuilderrc_oGjE --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QRpz6G42/b1 --logfile b1/build.log lucy_1.20-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QRpz6G42/pbuilderrc_Vm79 --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QRpz6G42/b2 --logfile b2/build.log lucy_1.20-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.9.7+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1~bpo12+1 (2024-07-03) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Mar 27 22:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Mar 27 22:09 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Mar 27 22:09 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Mar 27 22:09 more - -rwsr-xr-x 1 root root 55528 Mar 27 22:09 mount - -rwxr-xr-x 1 root root 18664 Mar 27 22:09 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 6 21:26 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Mar 27 22:09 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Jan 19 2024 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Mar 27 22:09 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Mar 27 22:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/281839/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Mar 29 2024 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Mar 29 2024 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Mar 29 2024 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Mar 29 2024 more + -rwsr-xr-x 1 root root 55528 Mar 29 2024 mount + -rwxr-xr-x 1 root root 18664 Mar 29 2024 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Sep 9 13:52 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Mar 29 2024 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Jan 20 2024 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Mar 29 2024 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Mar 29 2024 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/938040/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -226,7 +257,7 @@ Get: 29 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] -Fetched 18.3 MB in 3s (6779 kB/s) +Fetched 18.3 MB in 0s (133 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) @@ -366,7 +397,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lucy_1.20-3_source.changes +I: user script /srv/workspace/pbuilder/938040/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/938040/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lucy_1.20-3_source.changes dpkg-buildpackage: info: source package lucy dpkg-buildpackage: info: source version 1.20-3 dpkg-buildpackage: info: source distribution unstable @@ -376,7 +411,7 @@ debian/rules clean dh clean dh_auto_clean - make -j20 clean + make -j42 clean make[1]: Entering directory '/build/reproducible-path/lucy-1.20' rm -f lucy.o qual_trim.o abi.o vector.o splice.o poly.o lucy make[1]: Leaving directory '/build/reproducible-path/lucy-1.20' @@ -399,7 +434,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j20 "INSTALL=install --strip-program=true" + make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lucy-1.20' cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lucy.o lucy.c cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qual_trim.o qual_trim.c @@ -408,86 +443,24 @@ cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o splice.o splice.c cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c done! -poly.c: In function 'poly_at_left': -splice.c: In function 'splice_align_left': -poly.c:22:9: warning: implicit declaration of function 'abi_code' [-Wimplicit-function-declaration] - 22 | if (abi_code(*seq)==T) { - | ^~~~~~~~ -splice.c:53:12: warning: type defaults to 'int' in declaration of 'left' [-Wimplicit-int] - 53 | register left, top, direc, score, i, j; - | ^~~~ -splice.c:53:18: warning: type defaults to 'int' in declaration of 'top' [-Wimplicit-int] - 53 | register left, top, direc, score, i, j; - | ^~~ -splice.c:53:23: warning: type defaults to 'int' in declaration of 'direc' [-Wimplicit-int] - 53 | register left, top, direc, score, i, j; - | ^~~~~ -splice.c:53:30: warning: type defaults to 'int' in declaration of 'score' [-Wimplicit-int] - 53 | register left, top, direc, score, i, j; - | ^~~~~ -splice.c:53:37: warning: type defaults to 'int' in declaration of 'i' [-Wimplicit-int] - 53 | register left, top, direc, score, i, j; - | ^ -splice.c:53:40: warning: type defaults to 'int' in declaration of 'j' [-Wimplicit-int] - 53 | register left, top, direc, score, i, j; - | ^ -splice.c:68:32: warning: array subscript has type 'char' [-Wchar-subscripts] - 68 | Score(0,0)=max_score=match[*a][*b]; - | ^~ -splice.c:68:36: warning: array subscript has type 'char' [-Wchar-subscripts] - 68 | Score(0,0)=max_score=match[*a][*b]; - | ^~ -splice.c:75:20: warning: array subscript has type 'char' [-Wchar-subscripts] - 75 | score=match[a[i]][*b]; - | ~^~~ -splice.c:75:25: warning: array subscript has type 'char' [-Wchar-subscripts] - 75 | score=match[a[i]][*b]; - | ^~ -splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] - 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -splice.c:76:38: note: in expansion of macro 'Direc' - 76 | left=Score(i-1,0)+left_penalty[Direc(i-1,0)]; - | ^~~~~ -splice.c:90:19: warning: array subscript has type 'char' [-Wchar-subscripts] - 90 | score=match[*a][b[j]]; - | ^~ -splice.c:90:24: warning: array subscript has type 'char' [-Wchar-subscripts] - 90 | score=match[*a][b[j]]; - | ~^~~ qual_trim.c:10:1: warning: "/*" within comment [-Wcomment] 10 | /* qual_trim.c - Quality trimming algorithm which determines a "clean" | -splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] - 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -splice.c:91:36: note: in expansion of macro 'Direc' - 91 | top=Score(0,j-1)+top_penalty[Direc(0,j-1)]; - | ^~~~~ qual_trim.c:11:1: warning: "/*" within comment [-Wcomment] 11 | /* range for a sequence based on its phred quality values. | qual_trim.c:12:1: warning: "/*" within comment [-Wcomment] 12 | /* | -splice.c:107:18: warning: array subscript has type 'char' [-Wchar-subscripts] - 107 | score+=match[a[i]][b[j]]; - | ~^~~ qual_trim.c:13:1: warning: "/*" within comment [-Wcomment] 13 | /* Written by Michael Holmes, 4/13/99. | -splice.c:107:24: warning: array subscript has type 'char' [-Wchar-subscripts] - 107 | score+=match[a[i]][b[j]]; - | ~^~~ qual_trim.c:14:1: warning: "/*" within comment [-Wcomment] 14 | /* | qual_trim.c:15:1: warning: "/*" within comment [-Wcomment] 15 | /* 1/31/2000, Michael Holmes -- Added default_windows(). | -splice.c:110:17: warning: array subscript has type 'char' [-Wchar-subscripts] - 110 | score=match[a[i]][b[j]]; - | ~^~~ qual_trim.c:16:1: warning: "/*" within comment [-Wcomment] 16 | /* 2/15/2000, Michael Holmes -- Added bracket_clean_range() and | @@ -506,9 +479,9 @@ qual_trim.c:21:1: warning: "/*" within comment [-Wcomment] 21 | /* reserved. | -splice.c:110:23: warning: array subscript has type 'char' [-Wchar-subscripts] - 110 | score=match[a[i]][b[j]]; - | ~^~~ +abi.c:24:8: warning: type defaults to 'int' in declaration of 'condition' [-Wimplicit-int] + 24 | static condition[]={ + | ^~~~~~~~~ qual_trim.c:22:1: warning: "/*" within comment [-Wcomment] 22 | /* | @@ -542,18 +515,6 @@ qual_trim.c:32:1: warning: "/*" within comment [-Wcomment] 32 | /* interface that was used by the old quality trimmimg algorithm (grim), | -splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] - 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -splice.c:113:31: note: in expansion of macro 'Direc' - 113 | top=Score(i,j-1)+top_penalty[Direc(i,j-1)]; - | ^~~~~ -splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] - 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -splice.c:114:33: note: in expansion of macro 'Direc' - 114 | left=Score(i-1,j)+left_penalty[Direc(i-1,j)]; - | ^~~~~ qual_trim.c:33:1: warning: "/*" within comment [-Wcomment] 33 | /* but it is not called by lucy. The main() function is compiled only if | @@ -566,9 +527,6 @@ qual_trim.c:36:1: warning: "/*" within comment [-Wcomment] 36 | /* The calling hierarchy is: | -splice.c:139:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] - 139 | while (direc=Direc(i,j)) - | ^~~~~ qual_trim.c:37:1: warning: "/*" within comment [-Wcomment] 37 | /* | @@ -584,7 +542,6 @@ qual_trim.c:41:1: warning: "/*" within comment [-Wcomment] 41 | /* quality_trim() | -splice.c: In function 'splice_align_right': qual_trim.c:42:1: warning: "/*" within comment [-Wcomment] 42 | /* bracket_clean_range() | @@ -597,9 +554,6 @@ qual_trim.c:45:1: warning: "/*" within comment [-Wcomment] 45 | /* multi_window_trim() [recursive call] | -splice.c:176:12: warning: type defaults to 'int' in declaration of 'left' [-Wimplicit-int] - 176 | register left, top, direc, score, i, j; - | ^~~~ qual_trim.c:46:1: warning: "/*" within comment [-Wcomment] 46 | /* average_error_trim() | @@ -609,110 +563,109 @@ qual_trim.c:48:1: warning: "/*" within comment [-Wcomment] 48 | /**************************************************************************/ | -splice.c:176:18: warning: type defaults to 'int' in declaration of 'top' [-Wimplicit-int] - 176 | register left, top, direc, score, i, j; - | ^~~ -splice.c:176:23: warning: type defaults to 'int' in declaration of 'direc' [-Wimplicit-int] - 176 | register left, top, direc, score, i, j; - | ^~~~~ -splice.c:176:30: warning: type defaults to 'int' in declaration of 'score' [-Wimplicit-int] - 176 | register left, top, direc, score, i, j; - | ^~~~~ -splice.c:176:37: warning: type defaults to 'int' in declaration of 'i' [-Wimplicit-int] - 176 | register left, top, direc, score, i, j; - | ^ -splice.c:176:40: warning: type defaults to 'int' in declaration of 'j' [-Wimplicit-int] - 176 | register left, top, direc, score, i, j; - | ^ -abi.c:24:8: warning: type defaults to 'int' in declaration of 'condition' [-Wimplicit-int] - 24 | static condition[]={ - | ^~~~~~~~~ -splice.c:189:30: warning: array subscript has type 'char' [-Wchar-subscripts] - 189 | Score(0,0)=max_score=match[*a][*b]; - | ^~ -splice.c:189:34: warning: array subscript has type 'char' [-Wchar-subscripts] - 189 | Score(0,0)=max_score=match[*a][*b]; - | ^~ -splice.c:196:18: warning: array subscript has type 'char' [-Wchar-subscripts] - 196 | score=match[a[i]][*b]; - | ~^~~ -splice.c:196:23: warning: array subscript has type 'char' [-Wchar-subscripts] - 196 | score=match[a[i]][*b]; - | ^~ -splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] - 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -splice.c:197:36: note: in expansion of macro 'Direc' - 197 | left=Score(i-1,0)+left_penalty[Direc(i-1,0)]; - | ^~~~~ -splice.c:211:17: warning: array subscript has type 'char' [-Wchar-subscripts] - 211 | score=match[*a][b[j]]; - | ^~ -splice.c:211:22: warning: array subscript has type 'char' [-Wchar-subscripts] - 211 | score=match[*a][b[j]]; - | ~^~~ -splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] - 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -splice.c:212:34: note: in expansion of macro 'Direc' - 212 | top=Score(0,j-1)+top_penalty[Direc(0,j-1)]; - | ^~~~~ abi.c: In function 'abi_code': abi.c:70:15: warning: implicit declaration of function 'random' [-Wimplicit-function-declaration] 70 | case 5: tmp=random()%2 ? 2 : 0; break; | ^~~~~~ -splice.c:228:16: warning: array subscript has type 'char' [-Wchar-subscripts] - 228 | score+=match[a[i]][b[j]]; - | ~^~~ -splice.c:228:22: warning: array subscript has type 'char' [-Wchar-subscripts] - 228 | score+=match[a[i]][b[j]]; - | ~^~~ -splice.c:231:15: warning: array subscript has type 'char' [-Wchar-subscripts] - 231 | score=match[a[i]][b[j]]; - | ~^~~ -splice.c:231:21: warning: array subscript has type 'char' [-Wchar-subscripts] - 231 | score=match[a[i]][b[j]]; - | ~^~~ -splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] - 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -splice.c:234:36: note: in expansion of macro 'Direc' - 234 | top=Score(i,j-1)+top_penalty[Direc(i,j-1)]; - | ^~~~~ abi.c:82:5: warning: implicit declaration of function 'giveup' [-Wimplicit-function-declaration] 82 | giveup("how can other cases happen in tag_code?"); | ^~~~~~ +splice.c: In function 'splice_align_left': +splice.c:53:12: warning: type defaults to 'int' in declaration of 'left' [-Wimplicit-int] + 53 | register left, top, direc, score, i, j; + | ^~~~ +splice.c:53:18: warning: type defaults to 'int' in declaration of 'top' [-Wimplicit-int] + 53 | register left, top, direc, score, i, j; + | ^~~ +splice.c:53:23: warning: type defaults to 'int' in declaration of 'direc' [-Wimplicit-int] + 53 | register left, top, direc, score, i, j; + | ^~~~~ +splice.c:53:30: warning: type defaults to 'int' in declaration of 'score' [-Wimplicit-int] + 53 | register left, top, direc, score, i, j; + | ^~~~~ +splice.c:53:37: warning: type defaults to 'int' in declaration of 'i' [-Wimplicit-int] + 53 | register left, top, direc, score, i, j; + | ^ +splice.c:53:40: warning: type defaults to 'int' in declaration of 'j' [-Wimplicit-int] + 53 | register left, top, direc, score, i, j; + | ^ +poly.c: In function 'poly_at_left': +splice.c:68:32: warning: array subscript has type 'char' [-Wchar-subscripts] + 68 | Score(0,0)=max_score=match[*a][*b]; + | ^~ +splice.c:68:36: warning: array subscript has type 'char' [-Wchar-subscripts] + 68 | Score(0,0)=max_score=match[*a][*b]; + | ^~ +poly.c:22:9: warning: implicit declaration of function 'abi_code' [-Wimplicit-function-declaration] + 22 | if (abi_code(*seq)==T) { + | ^~~~~~~~ +splice.c:75:20: warning: array subscript has type 'char' [-Wchar-subscripts] + 75 | score=match[a[i]][*b]; + | ~^~~ +splice.c:75:25: warning: array subscript has type 'char' [-Wchar-subscripts] + 75 | score=match[a[i]][*b]; + | ^~ splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -splice.c:235:38: note: in expansion of macro 'Direc' - 235 | left=Score(i-1,j)+left_penalty[Direc(i-1,j)]; +splice.c:76:38: note: in expansion of macro 'Direc' + 76 | left=Score(i-1,0)+left_penalty[Direc(i-1,0)]; | ^~~~~ -splice.c:260:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] - 260 | while (direc=Direc(i,j)) - | ^~~~~ -splice.c:276:15: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 276 | if (j>=span && j>=width-max_i || j>height/2) - | ~~~~~~~~^~~~~~~~~~~~~~~~~ abi.c: In function 'abi_align': abi.c:195:18: warning: array subscript has type 'char' [-Wchar-subscripts] 195 | if (badness[a[i]][b[j]]) { | ~^~~ +splice.c:90:19: warning: array subscript has type 'char' [-Wchar-subscripts] + 90 | score=match[*a][b[j]]; + | ^~ abi.c:195:24: warning: array subscript has type 'char' [-Wchar-subscripts] 195 | if (badness[a[i]][b[j]]) { | ~^~~ +splice.c:90:24: warning: array subscript has type 'char' [-Wchar-subscripts] + 90 | score=match[*a][b[j]]; + | ~^~~ +splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] + 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +splice.c:91:36: note: in expansion of macro 'Direc' + 91 | top=Score(0,j-1)+top_penalty[Direc(0,j-1)]; + | ^~~~~ abi.c:221:18: warning: array subscript has type 'char' [-Wchar-subscripts] 221 | if (badness[a[i]][b[j]]) { | ~^~~ abi.c:221:24: warning: array subscript has type 'char' [-Wchar-subscripts] 221 | if (badness[a[i]][b[j]]) { | ~^~~ +splice.c:107:18: warning: array subscript has type 'char' [-Wchar-subscripts] + 107 | score+=match[a[i]][b[j]]; + | ~^~~ +splice.c:107:24: warning: array subscript has type 'char' [-Wchar-subscripts] + 107 | score+=match[a[i]][b[j]]; + | ~^~~ +splice.c:110:17: warning: array subscript has type 'char' [-Wchar-subscripts] + 110 | score=match[a[i]][b[j]]; + | ~^~~ abi.c:226:39: warning: array subscript has type 'char' [-Wchar-subscripts] 226 | l=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ +splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] + 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +splice.c:234:36: note: in expansion of macro 'Direc' + 234 | top=Score(i,j-1)+top_penalty[Direc(i,j-1)]; + | ^~~~~ abi.c:294:38: warning: array subscript has type 'char' [-Wchar-subscripts] 294 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ +splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] + 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +splice.c:235:38: note: in expansion of macro 'Direc' + 235 | left=Score(i-1,j)+left_penalty[Direc(i-1,j)]; + | ^~~~~ +splice.c:260:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] + 260 | while (direc=Direc(i,j)) + | ^~~~~ abi.c:301:23: warning: array subscript has type 'char' [-Wchar-subscripts] 301 | if ((count+=badness[a[l]][b[r]])=span && j>=width-max_i || j>height/2) + | ~~~~~~~~^~~~~~~~~~~~~~~~~ abi.c:313:32: warning: array subscript has type 'char' [-Wchar-subscripts] 313 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ @@ -785,10 +820,6 @@ abi.c:341:29: warning: array subscript has type 'char' [-Wchar-subscripts] 341 | if ((count+=badness[a[l]][b[r]])left), &(ptr->right)); - | ^~~~~~~~~~~~ qual_trim.c:218:1: warning: "/*" within comment [-Wcomment] 218 | /* double end_limit, (maximum allowed probability of error for bases) | @@ -846,6 +871,9 @@ qual_trim.c:220:1: warning: "/*" within comment [-Wcomment] 220 | /* | +lucy.c:531:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] + 531 | if (pthread_create(&threads[i], NULL, worker, (void*)i)) + | ^ qual_trim.c:332:1: warning: "/*" within comment [-Wcomment] 332 | /* Finds the largest subsequence of a sequence whose average probability | @@ -870,9 +898,6 @@ qual_trim.c:339:1: warning: "/*" within comment [-Wcomment] 339 | /* | -lucy.c:669:5: warning: implicit declaration of function 'prepare_abi_mask' [-Wimplicit-function-declaration] - 669 | prepare_abi_mask(); - | ^~~~~~~~~~~~~~~~ qual_trim.c:434:1: warning: "/*" within comment [-Wcomment] 434 | /* Determines a single clean range, after recursively considering all of | @@ -915,9 +940,6 @@ qual_trim.c:572:1: warning: "/*" within comment [-Wcomment] 572 | /* Globals used: | -lucy.c:713:2: warning: implicit declaration of function 'abi_align' [-Wimplicit-function-declaration] - 713 | abi_align(phred_seq, ptr->len, abi_seq, bases, &left, &right); - | ^~~~~~~~~ qual_trim.c:573:1: warning: "/*" within comment [-Wcomment] 573 | /* int bracket_window, (size of terminal window) | @@ -930,9 +952,16 @@ qual_trim.c:587:1: warning: "/*" within comment [-Wcomment] 587 | /* Finds the leftmost window, and the rightmost window, which meet the | +vector.c: In function 'tag_code': qual_trim.c:588:1: warning: "/*" within comment [-Wcomment] 588 | /* specified error criterion. The purpose of this function is to bracket | +lucy.c:639:7: warning: implicit declaration of function 'quality_trim' [-Wimplicit-function-declaration] + 639 | quality_trim(conf_val_raw, j, minimum, &(ptr->left), &(ptr->right)); + | ^~~~~~~~~~~~ +vector.c:44:10: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] + 44 | return tmp; + | ^~~ qual_trim.c:589:1: warning: "/*" within comment [-Wcomment] 589 | /* the portion of the sequence that is of decent quality -- i.e. to | @@ -975,12 +1004,12 @@ qual_trim.c:681:1: warning: "/*" within comment [-Wcomment] 681 | /* Globals used: | +lucy.c:669:5: warning: implicit declaration of function 'prepare_abi_mask' [-Wimplicit-function-declaration] + 669 | prepare_abi_mask(); + | ^~~~~~~~~~~~~~~~ qual_trim.c:682:1: warning: "/*" within comment [-Wcomment] 682 | /* int num_windows, (number of windows) | -lucy.c:792:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] - 792 | (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) { - | ^ qual_trim.c:683:1: warning: "/*" within comment [-Wcomment] 683 | /* int *windows, (array of window sizes (largest to smallest)) | @@ -1019,6 +1048,9 @@ qual_trim.c:792:1: warning: "/*" within comment [-Wcomment] 792 | /* Sets up 3 windows for quality trimming, with the average error allowed | +lucy.c:713:2: warning: implicit declaration of function 'abi_align' [-Wimplicit-function-declaration] + 713 | abi_align(phred_seq, ptr->len, abi_seq, bases, &left, &right); + | ^~~~~~~~~ qual_trim.c:793:1: warning: "/*" within comment [-Wcomment] 793 | /* in each window calculated from max_avg_error. | @@ -1070,24 +1102,27 @@ qual_trim.c:833:1: warning: "/*" within comment [-Wcomment] 833 | /* (for each window size) | +lucy.c:792:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] + 792 | (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) { + | ^ qual_trim.c:834:1: warning: "/*" within comment [-Wcomment] 834 | /* double max_avg_error, (maximum allowed average probability of error) | qual_trim.c:835:1: warning: "/*" within comment [-Wcomment] 835 | /* double end_limit, (maximum allowed probability of error for bases) | -lucy.c:891:7: warning: implicit declaration of function 'poly_at_left' [-Wimplicit-function-declaration] - 891 | left=poly_at_left(&phred_seq[seqs[i].left], - | ^~~~~~~~~~~~ qual_trim.c:836:1: warning: "/*" within comment [-Wcomment] 836 | /* ( at each end of clean range) | qual_trim.c:837:1: warning: "/*" within comment [-Wcomment] 837 | /* | -vector.c: In function 'tag_code': -vector.c:44:10: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] - 44 | return tmp; +lucy.c:891:7: warning: implicit declaration of function 'poly_at_left' [-Wimplicit-function-declaration] + 891 | left=poly_at_left(&phred_seq[seqs[i].left], + | ^~~~~~~~~~~~ +abi.c: In function 'abi_code': +abi.c:84:10: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] + 84 | return tmp; | ^~~ lucy.c:894:8: warning: implicit declaration of function 'poly_at_right' [-Wimplicit-function-declaration] 894 | right=poly_at_right(&phred_seq[seqs[i].right], @@ -1211,12 +1246,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/938040/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/938040/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/281839 and its subdirectories -I: Current time: Tue Aug 6 05:29:38 -12 2024 -I: pbuilder-time-stamp: 1722965378 +I: removing directory /srv/workspace/pbuilder/938040 and its subdirectories +I: Current time: Tue Sep 9 13:53:21 +14 2025 +I: pbuilder-time-stamp: 1757375601