Diff of the two buildlogs: -- --- b1/build.log 2024-07-05 09:48:39.155696277 +0000 +++ b2/build.log 2024-07-05 09:58:25.522840468 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 4 21:28:35 -12 2024 -I: pbuilder-time-stamp: 1720171715 +I: Current time: Fri Aug 8 06:11:42 +14 2025 +I: pbuilder-time-stamp: 1754583102 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./meep-openmpi_1.17.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.boDjTF7u/trustedkeys.kbx': General error -gpgv: Signature made Tue Feb 2 11:18:48 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.wQzSZ5hP/trustedkeys.kbx': General error +gpgv: Signature made Wed Feb 3 13:18:48 2021 +14 gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847 gpgv: issuer "debian@alteholz.de" gpgv: Can't check signature: No public key @@ -28,135 +28,166 @@ dpkg-source: info: unpacking meep-openmpi_1.17.1-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3140577/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2108418/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 8 06:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2108418/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2108418/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=20 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=42 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1d6852080bd848bc8603ee4dda22173a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3140577' - PS1='# ' - PS2='> ' + INVOCATION_ID=e4d86a1dcd4640438715e701118bfee7 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2108418 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qKyelXYw/pbuilderrc_IzZG --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qKyelXYw/b1 --logfile b1/build.log meep-openmpi_1.17.1-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qKyelXYw/pbuilderrc_iZlf --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qKyelXYw/b2 --logfile b2/build.log meep-openmpi_1.17.1-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-22-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.94-1 (2024-06-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Mar 27 22:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Mar 27 22:09 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Mar 27 22:09 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Mar 27 22:09 more - -rwsr-xr-x 1 root root 55528 Mar 27 22:09 mount - -rwxr-xr-x 1 root root 18664 Mar 27 22:09 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jun 6 21:25 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Mar 27 22:09 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Jan 19 21:59 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Mar 27 22:09 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Mar 27 22:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/3140577/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Mar 29 2024 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Mar 29 2024 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Mar 29 2024 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Mar 29 2024 more + -rwsr-xr-x 1 root root 55528 Mar 29 2024 mount + -rwxr-xr-x 1 root root 18664 Mar 29 2024 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Aug 8 06:11 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Mar 29 2024 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Jan 20 2024 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Mar 29 2024 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Mar 29 2024 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/2108418/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -391,7 +422,7 @@ Get: 161 http://deb.debian.org/debian bullseye/main amd64 python3-h5py all 2.10.0-9 [11.4 kB] Get: 162 http://deb.debian.org/debian bullseye/main amd64 swig4.0 amd64 4.0.2-1 [1377 kB] Get: 163 http://deb.debian.org/debian bullseye/main amd64 swig all 4.0.2-1 [330 kB] -Fetched 95.7 MB in 5s (18.4 MB/s) +Fetched 95.7 MB in 1s (86.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) @@ -1084,7 +1115,11 @@ fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/meep-openmpi-1.17.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../meep-openmpi_1.17.1-2_source.changes +I: user script /srv/workspace/pbuilder/2108418/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/2108418/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/meep-openmpi-1.17.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../meep-openmpi_1.17.1-2_source.changes dpkg-buildpackage: info: source package meep-openmpi dpkg-buildpackage: info: source version 1.17.1-2 dpkg-buildpackage: info: source distribution unstable @@ -1350,7 +1385,7 @@ config.status: executing libtool commands make[1]: Leaving directory '/build/reproducible-path/meep-openmpi-1.17.1' dh_auto_build - make -j20 + make -j42 make[1]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1' make all-recursive make[2]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1' @@ -1361,7 +1396,7 @@ make[4]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1/src' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now 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mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o .libs/h5file.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o .libs/sources.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o .libs/bicgstab.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o .libs/output_directory.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c initialize.cpp -fPIC -DPIC -o .libs/initialize.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o .libs/multilevel-atom.o -dft.cpp: In member function 'cdouble meep::dft_chunk::process_dft_component(int, meep::direction*, meep::ivec, meep::ivec, int, meep::h5file*, double*, int, cdouble*, void*, void*, int, bool, meep::fields*)': -dft.cpp:749:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 749 | if ((num_freq < 0) || (num_freq > omega.size()-1)) - | ~~~~~~~~~^~~~~~~~~~~~~~~~ -anisotropic_averaging.cpp: In function 'meep::vec meep::sphere_pt(const meep::vec&, double, int, double&)': -anisotropic_averaging.cpp:39:19: warning: control reaches end of non-void function [-Wreturn-type] - 39 | default: abort("unknown dimensions in sphere_pt\n"); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o .libs/step_db.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o .libs/step.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o .libs/structure.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o .libs/susceptibility.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o .libs/stress.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o .libs/near2far.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o .libs/vec.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o .libs/step_generic_stride1.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o .libs/update_pols.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o .libs/time.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o .libs/step_generic.o monitor.cpp: In member function 'double meep::fields::get_field(meep::derived_component, const meep::vec&, bool) const': monitor.cpp:123:19: warning: control reaches end of non-void function [-Wreturn-type] 123 | default: abort("unknown derived_component in get_field"); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': -boundaries.cpp:69:7: warning: this statement may fall through [-Wimplicit-fallthrough=] - 69 | switch (d) { - | ^~~~~~ -boundaries.cpp:77:5: note: here - 77 | case D3: - | ^~~~ +near2far.cpp: In member function 'meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)': +near2far.cpp:569:38: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] + 569 | everywhere = everywhere | where->v; + | ^ +In file included from meep.hpp:24, + from meep_internals.hpp:19, + from near2far.cpp:23: +meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' + 829 | volume(const volume &vol); + | ^~~~~~ loop_in_chunks.cpp: In member function 'void meep::fields::loop_in_chunks(meep::field_chunkloop, void*, const meep::volume&, meep::component, bool, bool)': loop_in_chunks.cpp:425:44: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 425 | vS = S.transform(chunks[i]->v, sn); @@ -1454,6 +1522,30 @@ meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ +mpb.cpp: In member function 'void* meep::fields::get_eigenmode(double, meep::direction, meep::volume, meep::volume, int, const meep::vec&, bool, int, double, double, double*, void**, meep::diffractedplanewave*)': +mpb.cpp:986:1: warning: no return statement in function returning non-void [-Wreturn-type] + 986 | } + | ^ +In file included from stress.cpp:21: +./meep.hpp: In constructor 'meep::dft_force::dft_force(meep::dft_chunk*, meep::dft_chunk*, meep::dft_chunk*, const double*, size_t, const meep::volume&)': +./meep.hpp:1194:10: warning: 'meep::dft_force::where' will be initialized after [-Wreorder] + 1194 | volume where; + | ^~~~~ +./meep.hpp:1192:23: warning: 'std::vector meep::dft_force::freq' [-Wreorder] + 1192 | std::vector freq; + | ^~~~ +stress.cpp:47:1: warning: when initialized here [-Wreorder] + 47 | dft_force::dft_force(dft_chunk *offdiag1_, dft_chunk *offdiag2_, dft_chunk *diag_, + | ^~~~~~~~~ +stress.cpp: In member function 'meep::dft_force meep::fields::add_dft_force(const meep::volume_list*, const double*, size_t)': +stress.cpp:182:38: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] + 182 | everywhere = everywhere | where->v; + | ^ +In file included from ./meep.hpp:24, + from stress.cpp:21: +./meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' + 829 | volume(const volume &vol); + | ^~~~~~ fields.cpp: In member function 'meep::volume meep::fields::total_volume() const': fields.cpp:639:31: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 639 | v = v | S.transform(gv0, n); @@ -1463,15 +1555,87 @@ meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ +structure.cpp: In member function 'void meep::structure::choose_chunkdivision(const meep::grid_volume&, int, const meep::boundary_region&, const meep::symmetry&)': +structure.cpp:130:23: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] + 130 | v = gv.surroundings(); + | ^ In file included from meep.hpp:24, - from multilevel-atom.cpp:22: -meep/vec.hpp: In member function 'virtual void meep::multilevel_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const': -meep/vec.hpp:430:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 430 | case Z: return (component)(start_point + 4); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ + from structure.cpp:23: +meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' + 829 | volume(const volume &vol); + | ^~~~~~ +structure.cpp: In function 'std::vector meep::choose_chunkdivision(meep::grid_volume&, meep::volume&, int, const meep::symmetry&)': +structure.cpp:207:25: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] + 207 | v = gv.surroundings(); + | ^ +In file included from meep.hpp:24, + from structure.cpp:23: +meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' + 829 | volume(const volume &vol); + | ^~~~~~ +vec.cpp: In member function 'size_t meep::grid_volume::surface_area() const': +vec.cpp:866:14: warning: statement has no effect [-Wunused-value] + 866 | case D1: 2; + | ^ +anisotropic_averaging.cpp: In function 'meep::vec meep::sphere_pt(const meep::vec&, double, int, double&)': +anisotropic_averaging.cpp:39:19: warning: control reaches end of non-void function [-Wreturn-type] + 39 | default: abort("unknown dimensions in sphere_pt\n"); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +dft.cpp: In member function 'cdouble meep::dft_chunk::process_dft_component(int, meep::direction*, meep::ivec, meep::ivec, int, meep::h5file*, double*, int, cdouble*, void*, void*, int, bool, meep::fields*)': +dft.cpp:749:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 749 | if ((num_freq < 0) || (num_freq > omega.size()-1)) + | ~~~~~~~~~^~~~~~~~~~~~~~~~ +vec.cpp: In member function 'meep::signed_direction meep::symmetry::transform(meep::direction, int) const': +vec.cpp:1367:27: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] + 1367 | if (nme == 1) sd = S[d]; + | ^ +In file included from meep.hpp:24, + from meep_internals.hpp:19, + from vec.cpp:23: +meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' + 86 | signed_direction(const signed_direction &sd) { + | ^~~~~~~~~~~~~~~~ +vec.cpp:1369:43: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] + 1369 | sd = flip(transform(S[d].d, nme - 1)); + | ^ +In file included from meep.hpp:24, + from meep_internals.hpp:19, + from vec.cpp:23: +meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' + 86 | signed_direction(const signed_direction &sd) { + | ^~~~~~~~~~~~~~~~ +vec.cpp:1371:37: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] + 1371 | sd = transform(S[d].d, nme - 1); + | ^ +In file included from meep.hpp:24, + from meep_internals.hpp:19, + from vec.cpp:23: +meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' + 86 | signed_direction(const signed_direction &sd) { + | ^~~~~~~~~~~~~~~~ +boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': +boundaries.cpp:69:7: warning: this statement may fall through [-Wimplicit-fallthrough=] + 69 | switch (d) { + | ^~~~~~ +boundaries.cpp:77:5: note: here + 77 | case D3: + | ^~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 +meepgeom.cpp: In function 'void meep_geom::material_grids_addgradient(meep::realnum*, size_t, std::complex*, std::complex*, meep::realnum*, size_t, meep::realnum, const meep::volume&, geom_box_tree, meep::fields*)': +meepgeom.cpp:2475:9: warning: unused variable 'rank' [-Wunused-variable] + 2475 | int rank = f->get_array_slice_dimensions(where, &dims[3 * c], dirs, true, false, min_max_loc, + | ^~~~ +meepgeom.cpp:2496:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 2496 | for (int i1 = 0; i1 < nf; ++i1) { // freq + | ~~~^~~~ +meepgeom.cpp:2497:22: warning: unused variable 'v_cur' [-Wunused-variable] + 2497 | meep::realnum *v_cur = &v[ng * i1]; + | ^~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o random.o >/dev/null 2>&1 +sources.cpp: In function 'std::complex meep::gaussianbeam_ampfunc(const meep::vec&)': +sources.cpp:490:1: warning: control reaches end of non-void function [-Wreturn-type] + 490 | } + | ^ In file included from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2887, from mympi.cpp:32: @@ -1482,114 +1646,6 @@ /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ -monitor.cpp: In member function 'std::complex meep::structure_chunk::get_chi1inv_at_pt(meep::component, meep::direction, int, double) const': -monitor.cpp:325:19: warning: 'comp_list[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] - 325 | component cc = comp_list[com_it]; - | ^~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o energy_and_flux.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 -In file included from meep.hpp:24, - from meep_internals.hpp:19, - from cw_fields.cpp:18: -meep/vec.hpp: In function 'void meep::fields_to_array(const meep::fields&, std::complex*)': -meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 432 | case P: return (component)(start_point + 3); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ -mympi.cpp: In function 'void meep::abort(const char*, ...)': -mympi.cpp:124:12: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 124 | vasprintf(&s, fmt, ap); - | ~~~~~~~~~^~~~~~~~~~~~~ -In file included from meep.hpp:24, - from casimir.cpp:29: -meep/vec.hpp: In member function 'std::complex meep::fields::casimir_stress_dct_integral(meep::direction, meep::direction, double, double, double, meep::field_type, meep::volume, bool)': -meep/vec.hpp:430:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 430 | case Z: return (component)(start_point + 4); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ -mympi.cpp: In function 'void meep::_do_master_printf(FILE*, meep::meep_printf_callback_func, const char*, __va_list_tag*)': -mympi.cpp:596:16: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 596 | vasprintf(&s, fmt, ap); - | ~~~~~~~~~^~~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o dft_ldos.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o h5fields.o >/dev/null 2>&1 -In file included from meep.hpp:24, - from boundaries.cpp:21: -meep/vec.hpp: In member function 'bool meep::fields::locate_component_point(meep::component*, meep::ivec*, std::complex*) const': -meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 431 | case R: return (component)(start_point + 2); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c initialize.cpp -fPIC -DPIC -o initialize.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o casimir.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o integrate.o >/dev/null 2>&1 -meep/vec.hpp: In function 'void meep::array_to_fields(const std::complex*, meep::fields&)': -meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 432 | case P: return (component)(start_point + 3); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o h5file.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o monitor.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o integrate2.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o near2far.lo near2far.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o fields.o >/dev/null 2>&1 -dft.cpp: In member function 'void meep::fields::get_overlap(void*, void*, meep::dft_flux, int, cdouble*)': -dft.cpp:1246:57: warning: '*((void*)& cH +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] - 1246 | mode2_data, cE[1]); - | ^ -dft.cpp:1244:57: warning: 'cH' may be used uninitialized in this function [-Wmaybe-uninitialized] - 1244 | mode2_data, cE[0]); - | ^ -dft.cpp:1246:57: warning: '*((void*)& cE +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] - 1246 | mode2_data, cE[1]); - | ^ -dft.cpp:1244:57: warning: 'cE' may be used uninitialized in this function [-Wmaybe-uninitialized] - 1244 | mode2_data, cE[0]); - | ^ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o .libs/near2far.o -meep/vec.hpp: In member function 'bool meep::fields::solve_cw(double, int, std::complex, int, std::complex*, double, int)': -meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 432 | case P: return (component)(start_point + 3); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o output_directory.lo output_directory.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o .libs/output_directory.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o loop_in_chunks.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o cw_fields.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o random.lo random.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sources.lo sources.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o .libs/sources.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 -near2far.cpp: In member function 'meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)': -near2far.cpp:569:38: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] - 569 | everywhere = everywhere | where->v; - | ^ -In file included from meep.hpp:24, - from meep_internals.hpp:19, - from near2far.cpp:23: -meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' - 829 | volume(const volume &vol); - | ^~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step.lo step.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_db.lo step_db.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o .libs/step.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o stress.lo stress.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o .libs/step_db.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o .libs/stress.o output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': output_directory.cpp:117:35: warning: '-out' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] 117 | snprintf(outdirname, buflen, "%s-out", basename); @@ -1624,31 +1680,24 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure.lo structure.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure_dump.lo structure_dump.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o random.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o boundaries.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o output_directory.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o .libs/structure.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o susceptibility.lo susceptibility.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o time.lo time.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_eh.lo update_eh.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o array_slice.o >/dev/null 2>&1 -meep/vec.hpp: In function 'void meep::greencyl(std::complex*, const meep::vec&, double, double, double, const meep::vec&, meep::component, std::complex, double, double)': -meep/vec.hpp:429:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 429 | case Y: return (component)(start_point + 1); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o .libs/susceptibility.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o .libs/time.o -sources.cpp: In function 'std::complex meep::gaussianbeam_ampfunc(const meep::vec&)': -sources.cpp:490:1: warning: control reaches end of non-void function [-Wreturn-type] - 490 | } - | ^ +monitor.cpp: In member function 'std::complex meep::structure_chunk::get_chi1inv_at_pt(meep::component, meep::direction, int, double) const': +monitor.cpp:325:19: warning: 'comp_list[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] + 325 | component cc = comp_list[com_it]; + | ^~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o mpb.o >/dev/null 2>&1 +vec.cpp: In member function 'double meep::grid_volume::boundary_location(meep::boundary_side, meep::direction) const': +vec.cpp:712:20: warning: this statement may fall through [-Wimplicit-fallthrough=] + 712 | case P: abort("P has no boundary!\n"); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +vec.cpp:713:7: note: here + 713 | case NO_DIRECTION: abort("NO_DIRECTION has no boundary!\n"); + | ^~~~ +vec.cpp:725:20: warning: this statement may fall through [-Wimplicit-fallthrough=] + 725 | case P: abort("P has no boundary!\n"); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +vec.cpp:726:7: note: here + 726 | case NO_DIRECTION: abort("NO_DIRECTION has no boundary!\n"); + | ^~~~ In file included from meep.hpp:24, from step.cpp:22: meep/vec.hpp: In member function 'void meep::fields_chunk::step_source(meep::field_type, bool)': @@ -1658,45 +1707,32 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mpb.lo mpb.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o step.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_pols.lo update_pols.cpp -In file included from stress.cpp:21: -./meep.hpp: In constructor 'meep::dft_force::dft_force(meep::dft_chunk*, meep::dft_chunk*, meep::dft_chunk*, const double*, size_t, const meep::volume&)': -./meep.hpp:1194:10: warning: 'meep::dft_force::where' will be initialized after [-Wreorder] - 1194 | volume where; - | ^~~~~ -./meep.hpp:1192:23: warning: 'std::vector meep::dft_force::freq' [-Wreorder] - 1192 | std::vector freq; - | ^~~~ -stress.cpp:47:1: warning: when initialized here [-Wreorder] - 47 | dft_force::dft_force(dft_chunk *offdiag1_, dft_chunk *offdiag2_, dft_chunk *diag_, - | ^~~~~~~~~ -stress.cpp: In member function 'meep::dft_force meep::fields::add_dft_force(const meep::volume_list*, const double*, size_t)': -stress.cpp:182:38: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] - 182 | everywhere = everywhere | where->v; - | ^ -In file included from ./meep.hpp:24, - from stress.cpp:21: -./meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' - 829 | volume(const volume &vol); - | ^~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o .libs/update_pols.o -In file included from meep.hpp:24, - from step_db.cpp:23: -meep/vec.hpp: In member function 'bool meep::fields_chunk::step_db(meep::field_type)': -meep/vec.hpp:429:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 429 | case Y: return (component)(start_point + 1); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ -near2far.cpp: In member function 'meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)': -near2far.cpp:626:42: warning: 'fd[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] - 626 | component c = direction_component(i == 0 ? Ex : Hx, fd[j]); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +mympi.cpp: In function 'void meep::abort(const char*, ...)': +mympi.cpp:124:12: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 124 | vasprintf(&s, fmt, ap); + | ~~~~~~~~~^~~~~~~~~~~~~ +mympi.cpp: In function 'void meep::_do_master_printf(FILE*, meep::meep_printf_callback_func, const char*, __va_list_tag*)': +mympi.cpp:596:16: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 596 | vasprintf(&s, fmt, ap); + | ~~~~~~~~~^~~~~~~~~~~~~ +meepgeom.cpp: In function 'meep::vec meep_geom::vector3_to_vec(vector3)': +meepgeom.cpp:254:25: warning: control reaches end of non-void function [-Wreturn-type] + 254 | default: meep::abort("unknown dimensionality in vector3_to_vec"); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o output_directory.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 +meepgeom.cpp: In function 'double meep_geom::vec_to_value(vector3, vector3, int)': +meepgeom.cpp:2227:1: warning: control reaches end of non-void function [-Wreturn-type] + 2227 | } + | ^ +meepgeom.cpp: In function 'std::complex meep_geom::cvec_to_value(vector3, cvector3, int)': +meepgeom.cpp:2212:1: warning: control reaches end of non-void function [-Wreturn-type] + 2212 | } + | ^ +meepgeom.cpp: At global scope: +meepgeom.cpp:2190:13: warning: 'void meep_geom::print_tensor(std::complex*)' defined but not used [-Wunused-function] + 2190 | static void print_tensor(std::complex *in) { + | ^~~~~~~~~~~~ In file included from meep.hpp:24, from update_eh.cpp:20: meep/vec.hpp: In member function 'bool meep::fields_chunk::update_eh(meep::field_type, bool)': @@ -1742,36 +1778,17 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -structure.cpp: In member function 'void meep::structure::choose_chunkdivision(const meep::grid_volume&, int, const meep::boundary_region&, const meep::symmetry&)': -structure.cpp:130:23: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] - 130 | v = gv.surroundings(); - | ^ In file included from meep.hpp:24, - from structure.cpp:23: -meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' - 829 | volume(const volume &vol); - | ^~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o vec.lo vec.cpp -structure.cpp: In function 'std::vector meep::choose_chunkdivision(meep::grid_volume&, meep::volume&, int, const meep::symmetry&)': -structure.cpp:207:25: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] - 207 | v = gv.surroundings(); - | ^ -In file included from meep.hpp:24, - from structure.cpp:23: -meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' - 829 | volume(const volume &vol); - | ^~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic.lo step_generic.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o .libs/vec.o + from multilevel-atom.cpp:22: +meep/vec.hpp: In member function 'virtual void meep::multilevel_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const': +meep/vec.hpp:430:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 430 | case Z: return (component)(start_point + 4); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o .libs/step_generic.o -mpb.cpp: In member function 'void* meep::fields::get_eigenmode(double, meep::direction, meep::volume, meep::volume, int, const meep::vec&, bool, int, double, double, double*, void**, meep::diffractedplanewave*)': -mpb.cpp:986:1: warning: no return statement in function returning non-void [-Wreturn-type] - 986 | } - | ^ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 structure_dump.cpp: In member function 'void meep::structure::dump(const char*)': structure_dump.cpp:275:46: warning: '_' directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] 275 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); @@ -1786,12 +1803,30 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o mpb.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o step.o >/dev/null 2>&1 +In file included from meep.hpp:24, + from meep_internals.hpp:19, + from cw_fields.cpp:18: +meep/vec.hpp: In function 'void meep::fields_to_array(const meep::fields&, std::complex*)': +meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 432 | case P: return (component)(start_point + 3); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o dft_ldos.o >/dev/null 2>&1 +In file included from meep.hpp:24, + from step_db.cpp:23: +meep/vec.hpp: In member function 'bool meep::fields_chunk::step_db(meep::field_type)': +meep/vec.hpp:429:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 429 | case Y: return (component)(start_point + 1); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o energy_and_flux.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o h5file.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 structure_dump.cpp: In member function 'void meep::structure::load(const char*)': structure_dump.cpp:644:44: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] 644 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); @@ -1807,7 +1842,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 In file included from meep.hpp:24, from susceptibility.cpp:31: meep/vec.hpp: In member function 'virtual void meep::lorentzian_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const': @@ -1817,7 +1852,7 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic_stride1.lo step_generic_stride1.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o integrate.o >/dev/null 2>&1 meep/vec.hpp: In member function 'virtual void meep::gyrotropic_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const': meep/vec.hpp:430:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); @@ -1825,6 +1860,16 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 +In file included from meep.hpp:24, + from casimir.cpp:29: +meep/vec.hpp: In member function 'std::complex meep::fields::casimir_stress_dct_integral(meep::direction, meep::direction, double, double, double, meep::field_type, meep::volume, bool)': +meep/vec.hpp:430:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 430 | case Z: return (component)(start_point + 4); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ meep/vec.hpp: In member function 'virtual bool meep::susceptibility::needs_W_notowned(meep::component, meep::realnum* (*)[2]) const': meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); @@ -1832,82 +1877,76 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o .libs/step_generic_stride1.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 -vec.cpp: In member function 'size_t meep::grid_volume::surface_area() const': -vec.cpp:866:14: warning: statement has no effect [-Wunused-value] - 866 | case D1: 2; - | ^ -vec.cpp: In member function 'meep::signed_direction meep::symmetry::transform(meep::direction, int) const': -vec.cpp:1367:27: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] - 1367 | if (nme == 1) sd = S[d]; - | ^ -In file included from meep.hpp:24, - from meep_internals.hpp:19, - from vec.cpp:23: -meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' - 86 | signed_direction(const signed_direction &sd) { - | ^~~~~~~~~~~~~~~~ -vec.cpp:1369:43: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] - 1369 | sd = flip(transform(S[d].d, nme - 1)); - | ^ -In file included from meep.hpp:24, - from meep_internals.hpp:19, - from vec.cpp:23: -meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' - 86 | signed_direction(const signed_direction &sd) { - | ^~~~~~~~~~~~~~~~ -vec.cpp:1371:37: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] - 1371 | sd = transform(S[d].d, nme - 1); - | ^ +meep/vec.hpp: In function 'void meep::greencyl(std::complex*, const meep::vec&, double, double, double, const meep::vec&, meep::component, std::complex, double, double)': +meep/vec.hpp:429:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 429 | case Y: return (component)(start_point + 1); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ In file included from meep.hpp:24, - from meep_internals.hpp:19, - from vec.cpp:23: -meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' - 86 | signed_direction(const signed_direction &sd) { - | ^~~~~~~~~~~~~~~~ + from boundaries.cpp:21: +meep/vec.hpp: In member function 'bool meep::fields::locate_component_point(meep::component*, meep::ivec*, std::complex*) const': +meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 431 | case R: return (component)(start_point + 2); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c initialize.cpp -fPIC -DPIC -o initialize.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o monitor.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o integrate2.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o casimir.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o h5fields.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 +meep/vec.hpp: In function 'void meep::array_to_fields(const std::complex*, meep::fields&)': +meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 432 | case P: return (component)(start_point + 3); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o fields.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o loop_in_chunks.o >/dev/null 2>&1 +near2far.cpp: In member function 'meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)': +near2far.cpp:626:42: warning: 'fd[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] + 626 | component c = direction_component(i == 0 ? Ex : Hx, fd[j]); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 +meep/vec.hpp: In member function 'bool meep::fields::solve_cw(double, int, std::complex, int, std::complex*, double, int)': +meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 432 | case P: return (component)(start_point + 3); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ +dft.cpp: In member function 'void meep::fields::get_overlap(void*, void*, meep::dft_flux, int, cdouble*)': +dft.cpp:1246:57: warning: '*((void*)& cH +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] + 1246 | mode2_data, cE[1]); + | ^ +dft.cpp:1244:57: warning: 'cH' may be used uninitialized in this function [-Wmaybe-uninitialized] + 1244 | mode2_data, cE[0]); + | ^ +dft.cpp:1246:57: warning: '*((void*)& cE +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] + 1246 | mode2_data, cE[1]); + | ^ +dft.cpp:1244:57: warning: 'cE' may be used uninitialized in this function [-Wmaybe-uninitialized] + 1244 | mode2_data, cE[0]); + | ^ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o cw_fields.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o sources.o >/dev/null 2>&1 -vec.cpp: In member function 'double meep::grid_volume::boundary_location(meep::boundary_side, meep::direction) const': -vec.cpp:712:20: warning: this statement may fall through [-Wimplicit-fallthrough=] - 712 | case P: abort("P has no boundary!\n"); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -vec.cpp:713:7: note: here - 713 | case NO_DIRECTION: abort("NO_DIRECTION has no boundary!\n"); - | ^~~~ -vec.cpp:725:20: warning: this statement may fall through [-Wimplicit-fallthrough=] - 725 | case P: abort("P has no boundary!\n"); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -vec.cpp:726:7: note: here - 726 | case NO_DIRECTION: abort("NO_DIRECTION has no boundary!\n"); - | ^~~~ -meepgeom.cpp: In function 'void meep_geom::material_grids_addgradient(meep::realnum*, size_t, std::complex*, std::complex*, meep::realnum*, size_t, meep::realnum, const meep::volume&, geom_box_tree, meep::fields*)': -meepgeom.cpp:2475:9: warning: unused variable 'rank' [-Wunused-variable] - 2475 | int rank = f->get_array_slice_dimensions(where, &dims[3 * c], dirs, true, false, min_max_loc, - | ^~~~ -meepgeom.cpp:2496:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 2496 | for (int i1 = 0; i1 < nf; ++i1) { // freq - | ~~~^~~~ -meepgeom.cpp:2497:22: warning: unused variable 'v_cur' [-Wunused-variable] - 2497 | meep::realnum *v_cur = &v[ng * i1]; - | ^~~~~ -meepgeom.cpp: In function 'meep::vec meep_geom::vector3_to_vec(vector3)': -meepgeom.cpp:254:25: warning: control reaches end of non-void function [-Wreturn-type] - 254 | default: meep::abort("unknown dimensionality in vector3_to_vec"); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -meepgeom.cpp: In function 'double meep_geom::vec_to_value(vector3, vector3, int)': -meepgeom.cpp:2227:1: warning: control reaches end of non-void function [-Wreturn-type] - 2227 | } - | ^ -meepgeom.cpp: In function 'std::complex meep_geom::cvec_to_value(vector3, cvector3, int)': -meepgeom.cpp:2212:1: warning: control reaches end of non-void function [-Wreturn-type] - 2212 | } - | ^ -meepgeom.cpp: At global scope: -meepgeom.cpp:2190:13: warning: 'void meep_geom::print_tensor(std::complex*)' defined but not used [-Wunused-function] - 2190 | static void print_tensor(std::complex *in) { - | ^~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o susceptibility.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o array_slice.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o boundaries.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 +meepgeom.cpp: In function 'meep::realnum meep_geom::get_material_gradient(meep::realnum, std::complex, std::complex, meep::realnum, meep_geom::material_data*, meep::component, meep::realnum)': +meepgeom.cpp:2314:62: warning: 'dir_idx' may be used uninitialized in this function [-Wmaybe-uninitialized] + 2314 | std::complex result = fields_a * dA_du[3 * dir_idx + dir_idx] * fields_f; + | ~~~~~~~~~~~~^~~~~~~~~ In file included from meep.hpp:24, from meep_internals.hpp:19, from vec.cpp:23: @@ -1918,16 +1957,12 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -meepgeom.cpp: In function 'meep::realnum meep_geom::get_material_gradient(meep::realnum, std::complex, std::complex, meep::realnum, meep_geom::material_data*, meep::component, meep::realnum)': -meepgeom.cpp:2314:62: warning: 'dir_idx' may be used uninitialized in this function [-Wmaybe-uninitialized] - 2314 | std::complex result = fields_a * dA_du[3 * dir_idx + dir_idx] * fields_f; - | ~~~~~~~~~~~~^~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/x86_64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/x86_64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/meepgeom.o .libs/GDSIIgeom.o .libs/step_generic_stride1.o -Wl,--whole-archive support/.libs/libsupport.a -Wl,--no-whole-archive -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -lfftw3 -lgfortran -lquadmath -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,libmeep.so.23 -o .libs/libmeep.so.23.0.1 libtool: link: (cd ".libs" && rm -f "libmeep.so.23" && ln -s "libmeep.so.23.0.1" "libmeep.so.23") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.23.0.1" "libmeep.so") @@ -1956,15 +1991,15 @@ ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" -cp -f /usr/share/libctl/base/main.c main.cpp -cp -f /usr/share/libctl/utils/geom.c geom.cpp -gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i +cp -f /usr/share/libctl/base/main.c main.cpp +cp -f /usr/share/libctl/utils/geom.c geom.cpp +gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm @@ -2208,7 +2243,7 @@ ../src/meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-2.2 -lgc -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/reproducible-path/meep-openmpi-1.17.1/scheme' make[3]: Leaving directory '/build/reproducible-path/meep-openmpi-1.17.1/scheme' @@ -2223,7 +2258,7 @@ fi make all-am make[4]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1/python' -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o .libs/_meep_la-meep-python.o In file included from meep-python.cxx:3508: typemap_utils.cpp: In function 'PyObject* py_volume_object()': @@ -2471,7 +2506,7 @@ 4614 | geom_box_tree geometry_tree = calculate_tree(*where_vol,*l); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/reproducible-path/meep-openmpi-1.17.1/src/.libs ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lquadmath -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.23 -o .libs/_meep.so.23.0.1 libtool: link: (cd ".libs" && rm -f "_meep.so.23" && ln -s "_meep.so.23.0.1" "_meep.so.23") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.23.0.1" "_meep.so") @@ -2523,89 +2558,89 @@ make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml pw-source-ll ring-ll cyl-ellipsoid-ll absorber-1d-ll array-slice-ll user-defined-material dft-fields gdsII-3d bend-flux-ll array-metadata make[4]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o aniso_disp.o aniso_disp.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o aniso_disp aniso_disp.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o aniso_disp aniso_disp.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/aniso_disp aniso_disp.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bench.o bench.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o bench bench.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu 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-L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o dft-fields dft-fields.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/dft-fields dft-fields.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o gdsII-3d.o gdsII-3d.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/gdsII-3d gdsII-3d.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu 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-lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/bend-flux-ll bend-flux-ll.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib 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-lquadmath libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/array-metadata array-metadata.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/reproducible-path/meep-openmpi-1.17.1/tests' make check-TESTS @@ -2777,1126 +2812,1126 @@ make[2]: *** [Makefile:508: check-recursive] Error 1 make[2]: Leaving directory '/build/reproducible-path/meep-openmpi-1.17.1' . -./configure.ac -./.clang-format -./.gitignore +./src +./src/meepgeom.cpp +./src/libmeep.la +./src/output_directory.lo +./src/casimir.o +./src/multilevel-atom.cpp +./src/h5fields.o +./src/structure.lo +./src/material_data.hpp +./src/vec.lo +./src/GDSIIgeom.o +./src/random.o +./src/step.o +./src/time.o +./src/h5file.o +./src/sphere-quad.cpp +./src/update_pols.lo +./src/initialize.cpp +./src/susceptibility.o +./src/meepgeom.o +./src/stress.o +./src/dft_ldos.cpp +./src/integrate2.lo +./src/GDSIIgeom.lo +./src/cw_fields.o +./src/bands.cpp +./src/anisotropic_averaging.o +./src/monitor.cpp +./src/step_generic_stride1.cpp +./src/step_db.lo +./src/mympi.o +./src/dft_ldos.lo +./src/sphere_quad +./src/dft_ldos.o +./src/boundaries.lo +./src/GDSIIgeom.cpp +./src/mpb.cpp +./src/fields.cpp +./src/fields.lo +./src/initialize.o +./src/near2far.o +./src/multilevel-atom.lo +./src/mympi.cpp +./src/meep +./src/meep/mympi.hpp +./src/meep/vec.hpp +./src/monitor.o +./src/.libs +./src/.libs/libmeep.la +./src/.libs/casimir.o +./src/.libs/h5fields.o +./src/.libs/GDSIIgeom.o +./src/.libs/random.o +./src/.libs/step.o +./src/.libs/time.o +./src/.libs/h5file.o +./src/.libs/susceptibility.o +./src/.libs/meepgeom.o +./src/.libs/stress.o +./src/.libs/libmeep.so.23 +./src/.libs/libmeep.a +./src/.libs/cw_fields.o +./src/.libs/anisotropic_averaging.o +./src/.libs/mympi.o +./src/.libs/dft_ldos.o +./src/.libs/initialize.o +./src/.libs/near2far.o +./src/.libs/monitor.o +./src/.libs/structure_dump.o +./src/.libs/dft.o +./src/.libs/vec.o +./src/.libs/step_db.o +./src/.libs/update_pols.o +./src/.libs/integrate2.o +./src/.libs/libmeep.so.23.0.1 +./src/.libs/bicgstab.o +./src/.libs/array_slice.o +./src/.libs/energy_and_flux.o +./src/.libs/multilevel-atom.o +./src/.libs/loop_in_chunks.o +./src/.libs/integrate.o +./src/.libs/boundaries.o +./src/.libs/fields.o +./src/.libs/libmeep.so +./src/.libs/libmeep.lai +./src/.libs/step_generic_stride1.o +./src/.libs/update_eh.o +./src/.libs/step_generic.o 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+./src/array_slice.o +./src/structure_dump.lo +./src/energy_and_flux.o +./src/loop_in_chunks.cpp +./src/multilevel-atom.o +./src/random.cpp +./src/h5file.cpp +./src/susceptibility.cpp +./src/meepgeom.lo +./src/loop_in_chunks.o +./src/array_slice.lo +./src/integrate.o +./src/step.cpp +./src/casimir.lo +./src/cw_fields.lo +./src/output_directory.cpp +./src/boundaries.o +./src/dft.cpp +./src/anisotropic_averaging.cpp +./src/h5file.lo +./src/loop_in_chunks.lo +./src/sources.cpp +./src/fields.o +./src/boundaries.cpp +./src/near2far.cpp +./src/integrate.cpp +./src/bicgstab.cpp +./src/bands.lo +./src/update_eh.cpp +./src/dft.lo +./src/step_db.cpp +./src/step_generic_stride1.o +./src/update_eh.o +./src/bicgstab.lo +./src/time.cpp +./src/meep.hpp +./src/structure_dump.cpp +./src/time.lo +./src/step_generic.o +./src/Makefile.in +./src/bands.o +./src/sphere-quad.o +./src/vec.cpp +./src/sources.o +./src/sphere-quad.h +./src/structure.o +./src/casimir.cpp +./src/integrate2.cpp +./src/bicgstab.hpp 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-./src/random.o -./src/meep.hpp -./src/output_directory.o -./src/step_generic.lo -./src/fields.lo -./src/loop_in_chunks.lo -./src/mpb.o -./src/random.cpp -./src/time.lo -./src/susceptibility.lo -./src/structure.cpp -./src/time.cpp -./src/step_generic_stride1.cpp -./src/monitor.cpp -./src/GDSIIgeom.cpp -./src/bands.cpp -./src/step_db.o -./src/near2far.o -./src/structure_dump.o -./src/Makefile.in -./src/structure.lo -./src/multilevel-atom.o -./src/casimir.cpp -./src/random.lo -./src/mympi.cpp -./src/bicgstab.cpp -./src/sphere-quad.cpp -./src/time.o -./src/update_eh.o -./src/structure.o -./src/update_eh.cpp -./src/initialize.cpp -./src/h5file.lo -./src/mpb.cpp -./src/step.lo -./src/multilevel-atom.lo -./src/adjust_verbosity.hpp -./src/h5file.o -./src/vec.o -./src/step_db.cpp -./src/meepgeom.hpp -./src/Makefile -./src/GDSIIgeom.o -./src/step_generic_stride1.lo -./src/mympi.lo -./src/near2far.lo -./src/meep -./src/meep/vec.hpp -./src/meep/mympi.hpp -./src/bands.o -./src/bicgstab.hpp -./src/stress.o -./src/initialize.o -./src/dft.cpp -./src/structure_dump.cpp -./src/update_pols.o -./src/step_generic.o -./src/dft.o -./src/support -./src/support/Makefile.in -./src/support/Makefile -./src/support/mt19937ar.lo -./src/support/mt19937ar.o -./src/support/.libs -./src/support/.libs/libsupport.a -./src/support/.libs/mt19937ar.o -./src/support/.libs/libsupport.la -./src/support/Makefile.am -./src/support/meep_mt.h -./src/support/libsupport.la -./src/support/mt19937ar.c -./src/multilevel-atom.cpp -./src/integrate.o -./src/h5file.cpp -./src/sphere-quad.h -./src/meepgeom.lo -./src/sources.lo -./src/step.o -./src/energy_and_flux.cpp -./src/integrate.lo -./src/energy_and_flux.o -./src/vec.cpp -./src/bands.lo -./src/boundaries.cpp -./src/boundaries.lo -./src/energy_and_flux.lo -./src/output_directory.cpp -./src/integrate2.lo -./src/libmeep.la -./src/susceptibility.cpp -./src/h5fields.o -./src/.libs -./src/.libs/cw_fields.o -./src/.libs/sources.o -./src/.libs/boundaries.o -./src/.libs/random.o -./src/.libs/output_directory.o -./src/.libs/mpb.o -./src/.libs/libmeep.a -./src/.libs/libmeep.so -./src/.libs/libmeep.so.23 -./src/.libs/step_db.o -./src/.libs/near2far.o -./src/.libs/structure_dump.o -./src/.libs/multilevel-atom.o -./src/.libs/time.o -./src/.libs/update_eh.o -./src/.libs/structure.o -./src/.libs/h5file.o -./src/.libs/vec.o -./src/.libs/GDSIIgeom.o -./src/.libs/bands.o -./src/.libs/stress.o -./src/.libs/initialize.o -./src/.libs/update_pols.o -./src/.libs/step_generic.o -./src/.libs/dft.o -./src/.libs/integrate.o -./src/.libs/step.o -./src/.libs/energy_and_flux.o -./src/.libs/libmeep.la -./src/.libs/h5fields.o -./src/.libs/dft_ldos.o -./src/.libs/casimir.o -./src/.libs/array_slice.o -./src/.libs/integrate2.o -./src/.libs/anisotropic_averaging.o -./src/.libs/libmeep.so.23.0.1 -./src/.libs/fields.o -./src/.libs/susceptibility.o -./src/.libs/loop_in_chunks.o -./src/.libs/libmeep.lai -./src/.libs/step_generic_stride1.o -./src/.libs/bicgstab.o -./src/.libs/meepgeom.o -./src/.libs/mympi.o -./src/.libs/monitor.o -./src/dft_ldos.o -./src/GDSIIgeom.lo -./src/integrate.cpp -./src/casimir.o -./src/array_slice.o -./src/anisotropic_averaging.lo -./src/integrate2.o -./src/anisotropic_averaging.o -./src/cw_fields.cpp -./src/casimir.lo -./src/fields.cpp -./src/h5fields.lo -./src/stress.cpp -./src/update_pols.lo -./src/dft_ldos.lo -./src/fields.o -./src/Makefile.am -./src/initialize.lo -./src/step.cpp -./src/sphere-quad.o -./src/integrate2.cpp -./src/loop_in_chunks.cpp -./src/output_directory.lo -./src/array_slice.cpp -./src/step_db.lo -./src/cw_fields.lo -./src/mpb.lo -./src/material_data.hpp -./src/array_slice.lo -./src/dft_ldos.cpp -./src/step_generic.cpp -./src/susceptibility.o -./src/loop_in_chunks.o -./src/meep_internals.hpp -./src/stress.lo -./src/step_generic_stride1.o -./src/update_pols.cpp -./src/meepgeom.cpp -./src/sphere_quad -./src/monitor.lo -./src/near2far.cpp -./src/anisotropic_averaging.cpp -./src/bicgstab.o -./src/h5fields.cpp -./src/vec.lo -./src/structure_dump.lo -./src/meepgeom.o -./src/dft.lo -./src/bicgstab.lo -./src/mympi.o -./src/sources.cpp -./src/monitor.o -./test-driver -./install-sh -./.mailmap -./Makefile.am -./NEWS.md -./depcomp -./mkdocs.yml -./meep-pkgconfig.in -./stamp-h1 -./README.md -./scheme -./scheme/meep_swig_bug_workaround.i -./scheme/meep.scm.in -./scheme/meep_wrap.cxx -./scheme/structure.cpp -./scheme/meep-ctl-io.o -./scheme/ctl-io.h -./scheme/Makefile.in -./scheme/meep-ctl-const.hpp -./scheme/meep-ctl.hpp -./scheme/meep-geom.o -./scheme/meep_wrap.patch -./scheme/Makefile -./scheme/meep_wrap.cxx.orig -./scheme/meep -./scheme/geom.cpp -./scheme/materials.scm -./scheme/meep_wrap.cxx.bak -./scheme/meep-enums.scm -./scheme/meep-meep.o -./scheme/ctl-io.i -./scheme/casimir.scm -./scheme/meep.scm -./scheme/meep-main.o -./scheme/.libs -./scheme/.libs/meep -./scheme/meep_op_renames.i -./scheme/examples -./scheme/examples/metal-cavity-ldos.ctl -./scheme/examples/wvg_src.ctl -./scheme/examples/differential-cross-section.ctl -./scheme/examples/cherenkov-radiation.ctl -./scheme/examples/holey-wvg-bands.ctl -./scheme/examples/perturbation-theory.ctl -./scheme/examples/oblique-source.ctl -./scheme/examples/holey-wvg-cavity.ctl -./scheme/examples/binary_grating.ctl -./scheme/examples/metasurface_lens_farfield.ctl -./scheme/examples/gaussian-beam.ctl -./scheme/examples/metasurface_lens_phasemap.ctl -./scheme/examples/polarization_grating.ctl -./scheme/examples/multilevel-atom.ctl -./scheme/examples/binary_grating_phasemap.ctl -./scheme/examples/ring.ctl -./scheme/examples/perturbation-theory-2d.ctl -./scheme/examples/finite_grating.ctl -./scheme/examples/binary_grating_n2f.ctl -./scheme/examples/straight-waveguide.ctl -./scheme/examples/ring-cyl.ctl -./scheme/examples/pw-source.ctl -./scheme/examples/antenna-radiation.ctl -./scheme/examples/absorbed-power-density.ctl -./scheme/examples/mode-coeffs.ctl -./scheme/examples/mie-scattering.ctl -./scheme/examples/solve-cw.ctl -./scheme/examples/chirped-pulse.ctl -./scheme/examples/faraday-rotation.ctl -./scheme/examples/oblique-planewave.ctl -./scheme/examples/binary_grating_oblique.ctl -./scheme/examples/refl-angular.ctl -./scheme/examples/bent-waveguide.ctl -./scheme/examples/refl-quartz.ctl -./scheme/examples/cylinder-cross-section.ctl -./scheme/examples/mode-decomposition.ctl -./scheme/examples/bend-flux.ctl -./scheme/examples/material-dispersion.ctl -./scheme/examples/3rd-harm-1d.ctl -./scheme/examples/parallel-wvgs-mpb.ctl -./scheme/examples/stochastic-emitter.ctl -./scheme/examples/group-velocity.ctl -./scheme/examples/zone-plate.ctl -./scheme/examples/parallel-wvgs-force.ctl -./scheme/examples/cavity-farfield.ctl -./scheme/examples/refl-angular-kz2d.ctl -./scheme/meep_renames.i -./scheme/meep-meep_wrap.o -./scheme/Makefile.am -./scheme/meep.cpp -./scheme/meep-structure.o -./scheme/ctl-io.cpp -./scheme/meep-ctl-swig.hpp -./scheme/meep_enum_renames.i -./scheme/meep.i -./scheme/main.cpp -./libpympb -./libpympb/Makefile.in -./libpympb/pympb.hpp -./libpympb/Makefile -./libpympb/Makefile.am -./libpympb/pympb.cpp -./configure -./aclocal.m4 +./Makefile.in +./py-compile +./configure.ac ./contrib ./contrib/build-meep.sh +./.travis.yml +./NEWS.md ======================================= meep 1.17.1: tests/test-suite.log ======================================= @@ -3937,7 +3972,7 @@ make[5]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1/src' make[6]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1/src' /bin/mkdir -p '/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.23.0.1 /build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.so.23.0.1 libtool: install: (cd /build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmeep.so.23.0.1 libmeep.so.23 || { rm -f libmeep.so.23 && ln -s libmeep.so.23.0.1 libmeep.so.23; }; }) libtool: install: (cd /build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmeep.so.23.0.1 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.23.0.1 libmeep.so; }; }) @@ -3967,7 +4002,7 @@ make[4]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1/scheme' make[5]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1/scheme' /bin/mkdir -p '/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c meep '/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/bin/meep /bin/mkdir -p '/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/share/meep' @@ -3981,9 +4016,9 @@ make[4]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1/python' make[5]: Entering directory '/build/reproducible-path/meep-openmpi-1.17.1/python' /bin/mkdir -p '/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' - /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' + /bin/sh ../libtool --mode=install /usr/bin/install -c _meep.la '/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' libtool: warning: relinking '_meep.la' -libtool: install: (cd /build/reproducible-path/meep-openmpi-1.17.1/python; /bin/bash "/build/reproducible-path/meep-openmpi-1.17.1/libtool" --tag CXX --mode=relink mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/reproducible-path/meep-openmpi-1.17.1/debian/tmp) +libtool: install: (cd /build/reproducible-path/meep-openmpi-1.17.1/python; /bin/sh "/build/reproducible-path/meep-openmpi-1.17.1/libtool" --tag CXX --mode=relink mpic++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/reproducible-path/meep-openmpi-1.17.1/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmeep -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lquadmath -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.23 -o .libs/_meep.so.23.0.1 libtool: install: /usr/bin/install -c .libs/_meep.so.23.0.1T /build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.so.23.0.1 libtool: install: (cd /build/reproducible-path/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep && { ln -s -f _meep.so.23.0.1 _meep.so.23 || { rm -f _meep.so.23 && ln -s _meep.so.23.0.1 _meep.so.23; }; }) @@ -4022,514 +4057,615 @@ make[2]: Leaving directory '/build/reproducible-path/meep-openmpi-1.17.1' find . -./configure.ac -./.clang-format -./.gitignore +./src +./src/meepgeom.cpp +./src/libmeep.la +./src/output_directory.lo +./src/casimir.o +./src/multilevel-atom.cpp +./src/h5fields.o +./src/structure.lo +./src/material_data.hpp +./src/vec.lo +./src/GDSIIgeom.o +./src/random.o +./src/step.o +./src/time.o +./src/h5file.o +./src/sphere-quad.cpp +./src/update_pols.lo +./src/initialize.cpp +./src/susceptibility.o +./src/meepgeom.o +./src/stress.o +./src/dft_ldos.cpp +./src/integrate2.lo +./src/GDSIIgeom.lo +./src/cw_fields.o +./src/bands.cpp +./src/anisotropic_averaging.o +./src/monitor.cpp +./src/step_generic_stride1.cpp +./src/step_db.lo +./src/mympi.o +./src/dft_ldos.lo +./src/sphere_quad +./src/dft_ldos.o +./src/boundaries.lo +./src/GDSIIgeom.cpp +./src/mpb.cpp +./src/fields.cpp +./src/fields.lo +./src/initialize.o +./src/near2far.o +./src/multilevel-atom.lo +./src/mympi.cpp +./src/meep +./src/meep/mympi.hpp +./src/meep/vec.hpp +./src/monitor.o +./src/.libs +./src/.libs/libmeep.la +./src/.libs/casimir.o +./src/.libs/h5fields.o +./src/.libs/GDSIIgeom.o +./src/.libs/random.o +./src/.libs/step.o +./src/.libs/time.o +./src/.libs/h5file.o +./src/.libs/susceptibility.o +./src/.libs/meepgeom.o +./src/.libs/stress.o +./src/.libs/libmeep.so.23 +./src/.libs/libmeep.a +./src/.libs/cw_fields.o +./src/.libs/anisotropic_averaging.o +./src/.libs/mympi.o +./src/.libs/dft_ldos.o +./src/.libs/initialize.o +./src/.libs/near2far.o +./src/.libs/monitor.o +./src/.libs/structure_dump.o +./src/.libs/dft.o +./src/.libs/vec.o +./src/.libs/step_db.o +./src/.libs/update_pols.o +./src/.libs/integrate2.o +./src/.libs/libmeep.so.23.0.1 +./src/.libs/bicgstab.o +./src/.libs/array_slice.o +./src/.libs/energy_and_flux.o +./src/.libs/multilevel-atom.o +./src/.libs/loop_in_chunks.o +./src/.libs/integrate.o +./src/.libs/boundaries.o +./src/.libs/fields.o +./src/.libs/libmeep.so +./src/.libs/libmeep.lai +./src/.libs/step_generic_stride1.o +./src/.libs/update_eh.o +./src/.libs/step_generic.o +./src/.libs/bands.o +./src/.libs/sources.o +./src/.libs/structure.o +./src/.libs/output_directory.o +./src/.libs/mpb.o +./src/array_slice.cpp +./src/update_eh.lo +./src/Makefile.am +./src/anisotropic_averaging.lo +./src/sources.lo +./src/structure.cpp +./src/random.lo +./src/step_generic.cpp +./src/structure_dump.o +./src/h5fields.cpp +./src/stress.cpp +./src/Makefile +./src/dft.o +./src/step_generic_stride1.lo +./src/mpb.lo +./src/stress.lo +./src/step_generic.lo +./src/vec.o +./src/near2far.lo +./src/support +./src/support/mt19937ar.o +./src/support/meep_mt.h +./src/support/.libs +./src/support/.libs/mt19937ar.o +./src/support/.libs/libsupport.la +./src/support/.libs/libsupport.a +./src/support/Makefile.am +./src/support/Makefile +./src/support/mt19937ar.lo +./src/support/mt19937ar.c +./src/support/Makefile.in +./src/support/libsupport.la +./src/cw_fields.cpp +./src/step_db.o +./src/update_pols.o +./src/integrate2.o +./src/bicgstab.o +./src/monitor.lo +./src/update_pols.cpp +./src/array_slice.o +./src/structure_dump.lo +./src/energy_and_flux.o +./src/loop_in_chunks.cpp +./src/multilevel-atom.o +./src/random.cpp +./src/h5file.cpp +./src/susceptibility.cpp 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+./src/mpb.o +./src/integrate.lo +./src/h5fields.lo +./src/meep_internals.hpp +./src/energy_and_flux.cpp ./LICENSE -./version.sh -./config.sub -./codemeta.json -./AUTHORS -./config.h +./scheme +./scheme/materials.scm +./scheme/meep-ctl-const.hpp +./scheme/meep.i +./scheme/casimir.scm +./scheme/meep-geom.o +./scheme/meep_wrap.cxx.bak +./scheme/meep +./scheme/ctl-io.h +./scheme/geom.cpp +./scheme/.libs +./scheme/.libs/meep +./scheme/meep-main.o +./scheme/Makefile.am +./scheme/structure.cpp +./scheme/meep_enum_renames.i +./scheme/meep_swig_bug_workaround.i +./scheme/ctl-io.i +./scheme/meep_renames.i +./scheme/Makefile +./scheme/meep-ctl-swig.hpp +./scheme/meep.cpp +./scheme/ctl-io.cpp +./scheme/meep_op_renames.i +./scheme/meep-structure.o +./scheme/main.cpp +./scheme/meep_wrap.cxx.orig +./scheme/meep_wrap.cxx +./scheme/meep_wrap.patch +./scheme/meep-enums.scm +./scheme/meep-ctl.hpp +./scheme/meep-meep.o +./scheme/meep.scm +./scheme/Makefile.in +./scheme/meep.scm.in +./scheme/meep-ctl-io.o 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-./debian/python3-meep-openmpi/usr -./debian/python3-meep-openmpi/usr/share -./debian/python3-meep-openmpi/usr/share/doc -./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi -./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi/changelog -./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi/changelog.Debian -./debian/libmeep-openmpi-dev.debhelper.log -./debian/libmeep-openmpi-dev.install ./debian/libmeep-openmpi-dev ./debian/libmeep-openmpi-dev/usr ./debian/libmeep-openmpi-dev/usr/share @@ -4537,722 +4673,621 @@ ./debian/libmeep-openmpi-dev/usr/share/doc/libmeep-openmpi-dev ./debian/libmeep-openmpi-dev/usr/share/doc/libmeep-openmpi-dev/changelog ./debian/libmeep-openmpi-dev/usr/share/doc/libmeep-openmpi-dev/changelog.Debian -./debian/libmeep-openmpi23.install -./debian/python3-meep-openmpi.postinst -./debian/meep-openmpi.install -./debian/watch -./debian/control -./debian/source -./debian/source/lintian-overrides -./debian/source/format 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-./.gitattributes -./m4 -./m4/ax_openmp.m4 -./m4/ltversion.m4 -./m4/ax_gcc_x86_cpuid.m4 -./m4/libtool.m4 -./m4/lt~obsolete.m4 -./m4/acx_blas.m4 -./m4/ax_check_compiler_flags.m4 -./m4/acx_mpi.m4 -./m4/ax_gcc_archflag.m4 -./m4/ltoptions.m4 -./m4/ax_cxx_maxopt.m4 -./m4/ltsugar.m4 -./m4/acx_lapack.m4 -./m4/ax_compiler_vendor.m4 -./m4/pkg.m4 -./py-compile +./install-sh +./libpympb +./libpympb/pympb.cpp +./libpympb/Makefile.am +./libpympb/Makefile +./libpympb/Makefile.in +./libpympb/pympb.hpp ./python -./python/visualization.py -./python/__init__.py -./python/verbosity_mgr.py -./python/geom.py -./python/vec.i -./python/materials.py -./python/Makefile.in +./python/mpb_data.py +./python/source.py ./python/meep-python.cxx -./python/numpy.i -./python/_meep_la-meep-python.lo -./python/adjoint -./python/adjoint/__init__.py -./python/adjoint/basis.py -./python/adjoint/objective.py -./python/adjoint/optimization_problem.py -./python/adjoint/filters.py -./python/adjoint/filter_source.py -./python/solver.py +./python/materials.py +./python/meep.i ./python/tests -./python/tests/visualization.py -./python/tests/cavity_farfield.py -./python/tests/cavity_arrayslice.trs -./python/tests/ldos.log -./python/tests/chunks.log -./python/tests/simulation.trs -./python/tests/cavity_farfield.trs +./python/tests/eigfreq.py +./python/tests/cyl_ellipsoid.trs +./python/tests/faraday_rotation.trs +./python/tests/dft_energy.py +./python/tests/get_point.log +./python/tests/cavity_arrayslice.py ./python/tests/field_functions.py -./python/tests/geom.py +./python/tests/get_point.py +./python/tests/source.py +./python/tests/field_functions.trs ./python/tests/material_dispersion.py -./python/tests/ring_cyl.trs -./python/tests/get_point.trs -./python/tests/array_metadata.log -./python/tests/kdom.py +./python/tests/bend_flux.trs +./python/tests/divide_mpi_processes.log ./python/tests/holey_wvg_cavity.trs -./python/tests/binary_grating.py -./python/tests/n2f_periodic.py 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-./scheme/examples/holey-wvg-cavity.ctl -./scheme/examples/binary_grating.ctl -./scheme/examples/metasurface_lens_farfield.ctl -./scheme/examples/gaussian-beam.ctl -./scheme/examples/metasurface_lens_phasemap.ctl -./scheme/examples/polarization_grating.ctl -./scheme/examples/multilevel-atom.ctl -./scheme/examples/binary_grating_phasemap.ctl -./scheme/examples/ring.ctl -./scheme/examples/perturbation-theory-2d.ctl -./scheme/examples/finite_grating.ctl -./scheme/examples/binary_grating_n2f.ctl -./scheme/examples/straight-waveguide.ctl -./scheme/examples/ring-cyl.ctl -./scheme/examples/pw-source.ctl -./scheme/examples/antenna-radiation.ctl -./scheme/examples/absorbed-power-density.ctl -./scheme/examples/mode-coeffs.ctl -./scheme/examples/mie-scattering.ctl -./scheme/examples/solve-cw.ctl -./scheme/examples/chirped-pulse.ctl -./scheme/examples/faraday-rotation.ctl -./scheme/examples/oblique-planewave.ctl -./scheme/examples/binary_grating_oblique.ctl -./scheme/examples/refl-angular.ctl -./scheme/examples/bent-waveguide.ctl -./scheme/examples/refl-quartz.ctl -./scheme/examples/cylinder-cross-section.ctl -./scheme/examples/mode-decomposition.ctl -./scheme/examples/bend-flux.ctl -./scheme/examples/material-dispersion.ctl -./scheme/examples/3rd-harm-1d.ctl -./scheme/examples/parallel-wvgs-mpb.ctl -./scheme/examples/stochastic-emitter.ctl -./scheme/examples/group-velocity.ctl -./scheme/examples/zone-plate.ctl -./scheme/examples/parallel-wvgs-force.ctl -./scheme/examples/cavity-farfield.ctl -./scheme/examples/refl-angular-kz2d.ctl -./scheme/meep_renames.i -./scheme/meep-meep_wrap.o -./scheme/Makefile.am -./scheme/meep.cpp -./scheme/meep-structure.o -./scheme/ctl-io.cpp -./scheme/meep-ctl-swig.hpp -./scheme/meep_enum_renames.i -./scheme/meep.i -./scheme/main.cpp -./libpympb -./libpympb/Makefile.in -./libpympb/pympb.hpp -./libpympb/Makefile -./libpympb/Makefile.am -./libpympb/pympb.cpp -./configure -./aclocal.m4 +./Makefile.in +./py-compile +./configure.ac ./contrib ./contrib/build-meep.sh +./.travis.yml +./NEWS.md rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.pyc rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.pyo rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.a @@ -5295,18 +5330,18 @@ dh_strip dh_makeshlibs dh_shlibdeps -dpkg-shlibdeps: warning: debian/python3-meep-openmpi/usr/lib/python3/dist-packages/meep/_meep.so.23.0.1 contains an unresolvable reference to symbol PyDict_SetItem: it's probably a plugin +dpkg-shlibdeps: warning: debian/python3-meep-openmpi/usr/lib/python3/dist-packages/meep/_meep.so.23.0.1 contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 108 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'python3-meep-openmpi-dbgsym' in '../python3-meep-openmpi-dbgsym_1.17.1-2_amd64.deb'. -dpkg-deb: building package 'libmeep-openmpi23-dbgsym' in '../libmeep-openmpi23-dbgsym_1.17.1-2_amd64.deb'. -dpkg-deb: building package 'meep-openmpi-dbgsym' in '../meep-openmpi-dbgsym_1.17.1-2_amd64.deb'. dpkg-deb: building package 'meep-openmpi' in '../meep-openmpi_1.17.1-2_amd64.deb'. -dpkg-deb: building package 'libmeep-openmpi23' in '../libmeep-openmpi23_1.17.1-2_amd64.deb'. +dpkg-deb: building package 'meep-openmpi-dbgsym' in '../meep-openmpi-dbgsym_1.17.1-2_amd64.deb'. dpkg-deb: building package 'libmeep-openmpi-dev' in '../libmeep-openmpi-dev_1.17.1-2_amd64.deb'. +dpkg-deb: building package 'libmeep-openmpi23' in '../libmeep-openmpi23_1.17.1-2_amd64.deb'. +dpkg-deb: building package 'python3-meep-openmpi-dbgsym' in '../python3-meep-openmpi-dbgsym_1.17.1-2_amd64.deb'. +dpkg-deb: building package 'libmeep-openmpi23-dbgsym' in '../libmeep-openmpi23-dbgsym_1.17.1-2_amd64.deb'. dpkg-deb: building package 'python3-meep-openmpi' in '../python3-meep-openmpi_1.17.1-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../meep-openmpi_1.17.1-2_amd64.changes @@ -5315,12 +5350,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2108418/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2108418/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3140577 and its subdirectories -I: Current time: Thu Jul 4 21:48:38 -12 2024 -I: pbuilder-time-stamp: 1720172918 +I: removing directory /srv/workspace/pbuilder/2108418 and its subdirectories +I: Current time: Fri Aug 8 06:21:24 +14 2025 +I: pbuilder-time-stamp: 1754583684