Diff of the two buildlogs: -- --- b1/build.log 2021-12-29 16:31:41.078312078 +0000 +++ b2/build.log 2021-12-29 16:39:53.542900300 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 29 04:30:38 -12 2021 -I: pbuilder-time-stamp: 1640795438 +I: Current time: Wed Feb 1 12:54:56 +14 2023 +I: pbuilder-time-stamp: 1675205696 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./minc-tools_2.3.00+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.MaqGrQjj/trustedkeys.kbx': General error -gpgv: Signature made Tue Dec 8 00:22:53 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.WNh1iFp3/trustedkeys.kbx': General error +gpgv: Signature made Wed Dec 9 02:22:53 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -34,135 +34,169 @@ dpkg-source: info: applying fix-gcc10-build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/383837/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3077616/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3077616/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3077616/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1ea48534f5a74778bb298bc73f71ba12' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='383837' - PS1='# ' - PS2='> ' + INVOCATION_ID=c04902ed728d48048f1855c894ce654b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3077616 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.bzgL43ed8d/pbuilderrc_iPyk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.bzgL43ed8d/b1 --logfile b1/build.log minc-tools_2.3.00+dfsg-6.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.bzgL43ed8d/pbuilderrc_WDEp --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.bzgL43ed8d/b2 --logfile b2/build.log minc-tools_2.3.00+dfsg-6.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more - -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Dec 20 21:24 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/383837/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 2021 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 2021 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 2021 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 2021 more + -rwsr-xr-x 1 root root 55528 Jul 29 2021 mount + -rwxr-xr-x 1 root root 18664 Jul 29 2021 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Feb 1 12:56 sh -> bash + lrwxrwxrwx 1 root root 4 Jan 24 05:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 2021 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 2021 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/3077616/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -344,7 +378,7 @@ Get: 126 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 127 http://deb.debian.org/debian bullseye/main amd64 texlive-base all 2020.20210202-3 [20.8 MB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-base all 2020.20210202-3 [1120 kB] -Fetched 84.8 MB in 1s (72.2 MB/s) +Fetched 84.8 MB in 24s (3537 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -893,7 +927,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minc-tools_2.3.00+dfsg-6_source.changes +hostname: Name or service not known +I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../minc-tools_2.3.00+dfsg-6_source.changes dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-6 dpkg-buildpackage: info: source distribution unstable @@ -1012,318 +1047,343 @@ -- Build files have been written to: /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_auto_build - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/depend -make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend -make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend -make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend -make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend -make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend +make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend +make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend -make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend -make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend +make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/depend.internal". make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/depend +make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend +make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake --color= +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/depend.internal". make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend +make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/depend.internal". make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/depend.internal". +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend +Scanning dependencies of target mincexpand +Scanning dependencies of target xfmconcat +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/depend.internal". +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build Scanning dependencies of target minccmp -Scanning dependencies of target mincexpand +Scanning dependencies of target mincstats +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target mincwindow +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/build +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal". +[ 0%] [BISON][ncgentab] Building parser with bison 3.7.5 +cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y +[ 1%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build +cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccopy.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccopy.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/depend.internal". -Scanning dependencies of target mincdump -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincinfo.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincinfo.dir/depend.internal". +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build +Scanning dependencies of target mincdump Scanning dependencies of target minccopy -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/depend.internal". -Scanning dependencies of target xfmconcat -Scanning dependencies of target mincinfo -[ 0%] [BISON][ncgentab] Building parser with bison 3.7.5 -Scanning dependencies of target mincexample1 -Scanning dependencies of target mincconcat -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 1%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/build -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/depend.internal". -cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y -make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/build -Scanning dependencies of target mincreshape -make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/depend.internal". +[ 2%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfmconcat.c +[ 3%] Building C object progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccmp/minccmp.c +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal". make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build -Scanning dependencies of target mincstats +make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/build +/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: warning: 1 shift/reduce conflict [-Wconflicts-sr] +/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples +[ 4%] [BISON][gram] Building parser with bison 3.7.5 +Scanning dependencies of target mincconcat make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal". -make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build +Scanning dependencies of target mincexample1 +cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison --debug -d -o /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/gram.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build +Scanning dependencies of target mincinfo +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l -make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/build -make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build -Scanning dependencies of target mincmakescalar -/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.ymake[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -: warning: 1 shift/reduce conflict [-Wconflicts-sr] -/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples -[ 2%] [BISON][gram] Building parser with bison 3.7.5 +[ 4%] Building C object progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexpand/mincexpand.c +[ 5%] [FLEX][lex] Building scanner with flex 2.6.4 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build +Scanning dependencies of target mincmakescalar make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build -cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison --debug -d -o /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/gram.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y +[ 5%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/mincdump.c.o +[ 6%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincstats/mincstats.c +cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build -[ 2%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -[ 2%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -[ 2%] Building C object progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -[ 3%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 4%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 6%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -[ 6%] Building C object progs/CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -/build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.ycd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexpand/mincexpand.c -: warning: 111 shift/reduce conflicts [-Wconflicts-sr] +/build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr] /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples [ 7%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 8%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconcat/mincconcat.c +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccopy/minccopy.c make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconcat/mincconcat.c +[ 10%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakescalar/mincmakescalar.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color= -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 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-I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincinfo/mincinfo.c +[ 12%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/vardata.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/vardata.c +Scanning dependencies of target mincreshape +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconvert.dir/depend.internal". 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object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o +[ 13%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c +[ 14%] Building C object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconvert/mincconvert.c -[ 13%] Linking C executable mincexpand +[ 15%] Linking C executable mincexpand cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexpand.dir/link.txt --verbose=1 -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color= -[ 14%] Linking C executable xfmconcat -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1 -[ 15%] Linking C executable minccopy /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -o mincexpand -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 16%] Linking C executable xfmconcat +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1 +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color= +[ 17%] Linking C executable minccopy cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccopy.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal". +[ 18%] Linking C executable mincwindow +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf Scanning dependencies of target mincgen make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build -[ 16%] Linking C executable mincwindow make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 -[ 17%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/main.c -[ 18%] Linking C executable mincconvert +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= +[ 19%] Linking C executable mincconvert cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconvert.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 19%] Linking C executable mincexample1 +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". +[ 20%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/main.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 21%] Linking C executable mincexample1 cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 20%] Linking C executable mincmakescalar +[ 22%] Linking C executable mincmakescalar cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1 -[ 21%] [FLEX][lex] Building scanner with flex 2.6.4 -cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l +Scanning dependencies of target minccalc /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 21%] Built target mincexpand -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend +make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= -[ 22%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o +[ 23%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c +[ 24%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgentab.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal". -Scanning dependencies of target mincsample make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 23%] Linking C executable mincinfo -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". -Scanning dependencies of target minccalc -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1 -[ 24%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c -make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build +[ 24%] Built target mincwindow +make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend [ 24%] Built target minccopy -[ 25%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/vardata.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/vardata.c +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 26%] Linking C executable minccmp -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 27%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o +[ 24%] Built target mincexpand +make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/depend.internal". Scanning dependencies of target invert_raw_image -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target mincsample make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build -[ 27%] Built target xfmconcat -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/build +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 27%] Built target mincwindow +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 25%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/dumplib.c +[ 25%] Built target mincconvert make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake --color= -[ 27%] Built target mincconvert Scanning dependencies of target minclookup -[ 27%] Built target mincexample1 -make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/depend +[ 26%] Linking C executable mincinfo make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/build +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal". +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake --color= +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal". +[ 27%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c +[ 28%] Linking C executable minccmp +[ 29%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o +[ 29%] Built target xfmconcat +make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/depend +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake --color= +[ 29%] Built target mincexample1 make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend -[ 28%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake --color= -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal". +[ 29%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o Scanning dependencies of target mincaverage +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 28%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minclookup/minclookup.c -Scanning dependencies of target mincblob -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal". Scanning dependencies of target mincmakevector -make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 29%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o +[ 30%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincaverage/mincaverage.c +Scanning dependencies of target mincblob make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 30%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincblob/mincblob.c +make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/build [ 30%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c -[ 30%] Built target mincmakescalar +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 31%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincblob/mincblob.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 31%] Built target mincmakescalar make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 31%] Linking C executable mincconcat +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1 Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmath.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmath.dir/depend.internal". +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target mincmath make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build -[ 30%] Linking C executable mincconcat make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1 -[ 30%] Built target mincinfo +[ 31%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c +[ 31%] Built target mincinfo +make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color= +[ 32%] Linking C executable mincdump +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 +[ 33%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c +[ 34%] Linking C executable invert_raw_image +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". +[ 35%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c +Scanning dependencies of target mincmorph +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build +[ 36%] Linking C executable mincmakevector +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' In file included from /usr/include/string.h:495, from /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:10: In function 'strncpy', inlined from 'yyparse' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:345:13: -make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1331,198 +1391,157 @@ /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:342:20: note: length computed here 342 | size_t len = strlen(termstring); | ^~~~~~~~~~~~~~~~~~ -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color= -[ 31%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". -Scanning dependencies of target mincmorph +[ 36%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/mincmorph.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 37%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 32%] Linking C executable invert_raw_image -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 32%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/mincmorph.c -[ 32%] Built target minccmp +[ 37%] Built target minccmp make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend +[ 37%] Built target mincconcat make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color= -[ 33%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c -[ 34%] Linking C executable mincmakevector -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 +make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/depend.internal". Scanning dependencies of target minc_modify_header make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 34%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 35%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minc_modify_header/minc_modify_header.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 35%] Built target mincconcat -make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend -[ 35%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake --color= -[ 35%] Linking C executable mincsample -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 36%] Linking C executable minclookup -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/depend.internal". -Scanning dependencies of target xfminvert -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build -[ 36%] Built target invert_raw_image +[ 37%] Built target invert_raw_image make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend +Scanning dependencies of target xfminvert +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 38%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake --color= -[ 37%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/optim.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/optim.c +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 39%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minc_modify_header/minc_modify_header.c Dependee 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Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample2.dir/depend.internal". +[ 40%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c +[ 41%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c Scanning dependencies of target mincexample2 +[ 41%] Built target mincdump +make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 38%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/build -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/dumplib.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 38%] Linking C executable mincblob -[ 38%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 -[ 39%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal". +[ 42%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample2.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -[ 40%] Linking C executable mincaverage -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 +[ 43%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/scalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/scalar.c +[ 43%] Linking C executable mincblob make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf -[ 40%] Built target mincmakevector -make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 +[ 44%] Linking C executable minclookup +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 +[ 44%] Built target mincmakevector +make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal". +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake --color= +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf Scanning dependencies of target mincresample make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 41%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/depend.internal". +[ 44%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c +[ 45%] Linking C executable mincaverage +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 +[ 46%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o +Scanning dependencies of target minctoraw +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c -[ 42%] Linking C executable mincmath +[ 47%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c +[ 47%] Linking C executable mincsample +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +[ 48%] Linking C executable xfminvert +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfminvert.dir/link.txt --verbose=1 +[ 48%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +[ 49%] Linking C executable mincmath cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 -[ 42%] Linking C executable minc_modify_header /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf +[ 49%] Linking C executable minc_modify_header cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 43%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o +[ 49%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c +[ 50%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c +[ 51%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 44%] Linking C executable xfminvert -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfminvert.dir/link.txt --verbose=1 -[ 44%] Built target minclookup -make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake --color= -[ 45%] Linking C executable mincdump -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/depend.internal". -Scanning dependencies of target minctoraw +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/vector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/vector.c +[ 52%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 46%] Linking C executable mincexample2 -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 53%] Linking C executable mincexample2 cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1 -[ 47%] Linking C executable mincstats -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 47%] Built target mincaverage +[ 53%] Built target mincblob make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake --color= -[ 48%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/depend.internal". -Scanning dependencies of target rawtominc -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 48%] Built target mincblob +[ 53%] Built target minclookup make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake --color= -[ 49%] Building C object progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c -[ 49%] Built target mincsample +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincextract.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincextract.dir/depend.internal". -make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target mincextract -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 53%] Linking C executable minctoraw +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 50%] Linking C executable mincreshape +Scanning dependencies of target rawtominc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal". -[ 50%] Built target mincmath -Scanning dependencies of target transformtags +make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build +[ 53%] Built target mincaverage +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build -make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend +[ 54%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/lex.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c +make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color= -[ 51%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake --color= +[ 55%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincextract/mincextract.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 52%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o -[ 52%] Built target minc_modify_header -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c -make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal". -Scanning dependencies of target voxeltoworld -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal". -Scanning dependencies of target worldtovoxel -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 53%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/voxeltoworld.c +[ 56%] Building C object progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c +[ 55%] Built target mincsample +make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function 'create_output_file.constprop': /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 1454 | (void) sprintf(string, "%s%d", dimname, idim); @@ -1537,140 +1556,166 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 54%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/worldtovoxel.c +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color= +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal". +Scanning dependencies of target transformtags make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal". +Scanning dependencies of target voxeltoworld make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 55%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o +make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 57%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c +[ 58%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/voxeltoworld.c +[ 59%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/gram.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 56%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -[ 56%] Built target mincexample2 +[ 60%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c -[ 57%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 60%] Built target mincmath +make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= +[ 60%] Built target xfminvert make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend +[ 60%] Built target minc_modify_header +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal". make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 57%] Built target xfminvert make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend +Scanning dependencies of target worldtovoxel +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/depend.internal". -[ 57%] Built target mincstats -make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color= -Scanning dependencies of target acr_nema +[ 61%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/worldtovoxel.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/depend.internal". -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 57%] Built target mincdump Scanning dependencies of target mnc2nii -make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 61%] Built target mincexample2 +make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 58%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -[ 58%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -[ 59%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/acr_io.c +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color= +[ 62%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c +[ 63%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/depend.internal". -Scanning dependencies of target ecattominc -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build -[ 59%] Linking C executable minctoraw -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 60%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 -[ 61%] Linking C executable transformtags -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 62%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o -[ 63%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecattominc.c -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 64%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -[ 65%] Linking C executable voxeltoworld -[ 65%] Built target mincreshape -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 +[ 63%] Built target minctoraw make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake --color= -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +[ 64%] Linking C executable voxeltoworld +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 +[ 65%] Linking C executable transformtags +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 +Scanning dependencies of target ecattominc +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal". +[ 66%] Linking C executable mincstats +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +[ 67%] Linking C executable mincreshape +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 +[ 68%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o +[ 69%] Linking C executable mincextract +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1 +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecattominc.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 69%] Linking C executable worldtovoxel +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/worldtovoxel.dir/link.txt --verbose=1 Scanning dependencies of target minctoecat -[ 65%] Linking C executable worldtovoxel make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/worldtovoxel.dir/link.txt --verbose=1 -[ 66%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/minctoecat.c -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake --color= /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal". -[ 67%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o -Scanning dependencies of target nii2mnc -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/optim.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/optim.c +[ 70%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/minctoecat.c +Scanning dependencies of target acr_nema make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build +make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 68%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c -[ 69%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -[ 70%] Linking C executable mincextract -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 70%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/acr_io.c +[ 71%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c +[ 71%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/scalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/scalar.c -[ 71%] Built target minctoraw -make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend -/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': -/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 71%] Built target mincreshape +make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake --color= +[ 71%] Built target mincextract +make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake --color= [ 71%] Built target transformtags make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 72%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal". +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/depend.internal". +[ 73%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c +[ 73%] Built target voxeltoworld +[ 73%] Built target mincstats +Scanning dependencies of target nii2mnc +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 74%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o +[ 74%] Linking C executable mnc2nii +[ 75%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 Scanning dependencies of target upet2mnc +[ 76%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c -[ 72%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/vector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/vector.c -[ 72%] Built target voxeltoworld -[ 73%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o +[ 77%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio +[ 78%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c -[ 74%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/lex.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c -[ 74%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c -[ 74%] Built target worldtovoxel make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 78%] Linking C executable minccalc +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 +[ 78%] Built target worldtovoxel /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ @@ -1690,126 +1735,117 @@ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro 'VERSIONSTR' 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ -[ 74%] Linking C executable mnc2nii -[ 74%] Built target mincextract -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 -[ 75%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c -[ 76%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/gram.c -[ 77%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio -[ 78%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o 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'/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 82%] Built target minccalc +[ 82%] Linking C executable rawtominc +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 [ 83%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H 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-I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c -[ 87%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o +[ 84%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/group.c -/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c': -/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:21: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] - 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); - | ^~~~~ -/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:20: note: assuming directive output of 22 bytes - 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); - | ^~~~~~~ -In file included from /usr/include/stdio.h:867, - from /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 - 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 37 | __bos (__s), __fmt, __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf +[ 85%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/message.c -[ 87%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o +[ 85%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o +[ 85%] Built target mincmorph cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c -[ 88%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o +[ 86%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o +[ 87%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c +[ 87%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/machine_indep.c +[ 87%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c +[ 88%] Linking C executable nii2mnc +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio +[ 89%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/load.c -[ 88%] Linking C executable upet2mnc +[ 90%] Linking C executable ecattominc +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 90%] Built target rawtominc +[ 90%] Linking C executable upet2mnc cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 -[ 89%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 89%] Linking C executable minccalc -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 -[ 89%] Built target mincmorph -[ 89%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/machine_indep.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf -[ 89%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c +[ 90%] Built target nii2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 89%] Built target upet2mnc -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 89%] Built target minccalc -[ 90%] Linking C static library libacr_nema.a -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake +[ 90%] Built target ecattominc [ 91%] Linking C executable minctoecat cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1 -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 +[ 92%] Linking C static library libacr_nema.a +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 +[ 92%] Built target upet2mnc /usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o /usr/bin/ranlib libacr_nema.a make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 92%] Linking C executable mincgen -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 [ 92%] Built target acr_nema make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake --color= -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c': +/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:21: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] + 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); + | ^~~~~ +/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:20: note: assuming directive output of 22 bytes + 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); + | ^~~~~~~ +In file included from /usr/include/stdio.h:867, + from /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 + 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 37 | __bos (__s), __fmt, __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/depend.internal". +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 92%] Built target minctoecat Scanning dependencies of target dcm2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 93%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -[ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -[ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -[ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -[ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c +[ 93%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o +[ 94%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c +[ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o +[ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c +[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c +[ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c +[ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c -[ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c -[ 99%] Linking C executable ecattominc -cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ @@ -1835,15 +1871,14 @@ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1084 | fread(data, 1, length, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target mincgen -[ 99%] Built target minctoecat -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target ecattominc +[ 99%] Linking C executable mincgen +cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [100%] Linking C executable mincresample cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +[100%] Built target mincgen make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [100%] Built target mincresample [100%] Linking C executable dcm2mnc @@ -1855,10 +1890,10 @@ /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' dh_auto_test - cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=-j15 + cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=-j16 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process -j15 +/usr/bin/ctest --force-new-ctest-process -j16 Test project /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu Start 1: mincinfo-test Start 2: mincstats-test @@ -1866,21 +1901,21 @@ Start 4: minccalc-test Start 5: mincresample-test Start 6: mincreshape-test -1/6 Test #5: mincresample-test ................ Passed 0.07 sec -2/6 Test #3: mincaverage-test ................. Passed 0.09 sec -3/6 Test #2: mincstats-test ................... Passed 0.14 sec -4/6 Test #1: mincinfo-test .................... Passed 0.22 sec -5/6 Test #6: mincreshape-test ................. Passed 0.27 sec -6/6 Test #4: minccalc-test .................... Passed 0.35 sec +1/6 Test #5: mincresample-test ................ Passed 0.50 sec +2/6 Test #3: mincaverage-test ................. Passed 0.61 sec +3/6 Test #2: mincstats-test ................... Passed 0.84 sec +4/6 Test #1: mincinfo-test .................... Passed 1.25 sec +5/6 Test #6: mincreshape-test ................. Passed 1.40 sec +6/6 Test #4: minccalc-test .................... Passed 1.66 sec 100% tests passed, 0 tests failed out of 6 -Total Test time (real) = 0.36 sec +Total Test time (real) = 1.78 sec make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2005,8 +2040,8 @@ dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-6_amd64.deb'. dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-6_amd64.deb'. +dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../minc-tools_2.3.00+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2014,12 +2049,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3077616/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3077616/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/383837 and its subdirectories -I: Current time: Wed Dec 29 04:31:40 -12 2021 -I: pbuilder-time-stamp: 1640795500 +I: removing directory /srv/workspace/pbuilder/3077616 and its subdirectories +I: Current time: Wed Feb 1 13:02:53 +14 2023 +I: pbuilder-time-stamp: 1675206173