Diff of the two buildlogs: -- --- b1/build.log 2021-12-31 05:14:34.996509298 +0000 +++ b2/build.log 2021-12-31 06:16:02.016901153 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Feb 1 22:48:43 -12 2023 -I: pbuilder-time-stamp: 1675334923 +I: Current time: Fri Dec 31 19:14:43 +14 2021 +I: pbuilder-time-stamp: 1640927683 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./openmm_7.5.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.Fvr7lYZI/trustedkeys.kbx': General error -gpgv: Signature made Thu Dec 10 02:49:41 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.uYHyVCCE/trustedkeys.kbx': General error +gpgv: Signature made Fri Dec 11 04:49:41 2020 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key @@ -31,135 +31,169 @@ dpkg-source: info: applying ignore-stochastic-test-failures.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3521941/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/73363/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/73363/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/73363/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='c18a126d01724474af8a800a9901f1ba' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3521941' - PS1='# ' - PS2='> ' + INVOCATION_ID=5e3800eb3b0a4f8681c8afa234f99c58 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=73363 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.CG1kbCAIZ5/pbuilderrc_PwO1 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.CG1kbCAIZ5/b1 --logfile b1/build.log openmm_7.5.0+dfsg-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.CG1kbCAIZ5/pbuilderrc_lnxr --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.CG1kbCAIZ5/b2 --logfile b2/build.log openmm_7.5.0+dfsg-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 2021 more - -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount - -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 23 03:47 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 2021 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/3521941/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more + -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Dec 31 19:15 sh -> bash + lrwxrwxrwx 1 root root 4 Dec 21 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/73363/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -320,7 +354,7 @@ Get: 104 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get: 105 http://deb.debian.org/debian bullseye/main amd64 swig4.0 amd64 4.0.2-1 [1377 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 swig all 4.0.2-1 [330 kB] -Fetched 108 MB in 1s (75.3 MB/s) +Fetched 108 MB in 7s (15.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -764,7 +798,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/openmm-7.5.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../openmm_7.5.0+dfsg-1_source.changes +hostname: Name or service not known +I: Running cd /build/openmm-7.5.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../openmm_7.5.0+dfsg-1_source.changes dpkg-buildpackage: info: source package openmm dpkg-buildpackage: info: source version 7.5.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -837,7 +872,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/openmm-7.5.0+dfsg' dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openmm-7.5.0+dfsg -B/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -846,739 +881,641 @@ make -f CMakeFiles/OpenMM.dir/build.make CMakeFiles/OpenMM.dir/depend make -f wrappers/python/CMakeFiles/BuildModule.dir/build.make wrappers/python/CMakeFiles/BuildModule.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/wrappers/python /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/wrappers/python /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/depend.internal". Scanning dependencies of target BuildModule make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f wrappers/python/CMakeFiles/BuildModule.dir/build.make wrappers/python/CMakeFiles/BuildModule.dir/build -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/OpenMM.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/OpenMM.i [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/MANIFEST.in to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/MANIFEST.in -[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputBuilder.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py -[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputConfig.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputConfig.py +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/OpenMM.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/OpenMM.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/MANIFEST.in /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/MANIFEST.in -[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/doxygen/buildXML.sh to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/doxygen/buildXML.sh cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/OpenMM.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/OpenMM.i +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputConfig.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputConfig.py +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputBuilder.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/doxygen/buildXML.sh to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/doxygen/buildXML.sh +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/extend.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/extend.i +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputConfig.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputConfig.py [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/exceptions.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/exceptions.i -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputBuilder.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py -[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/features.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/features.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/doxygen/buildXML.sh /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/doxygen/buildXML.sh -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputConfig.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputConfig.py -[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/header.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/header.i -[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/extend.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/extend.i -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/exceptions.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/exceptions.i +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swigInputBuilder.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/extend.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/extend.i -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/features.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/features.i +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/exceptions.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/exceptions.i +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/header.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/header.i +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/features.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/features.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/header.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/header.i -[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/__init__.py [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/pythoncode.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/pythoncode.i -[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/__init__.py -[ 0%] CMake-copying file 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/build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/typemaps.i to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/typemaps.i cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/typemaps.i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/typemaps.i -[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/__init__.py +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/__init__.py +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/__init__.py +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/__init__.py +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/amd.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/amd.py [ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/amberinpcrdfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/amberinpcrdfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/amd.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/amd.py +[ 0%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/__init__.py -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/amberinpcrdfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/amberinpcrdfile.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/amberprmtopfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/amberprmtopfile.py +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/amberinpcrdfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/amberinpcrdfile.py +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/amberprmtopfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/amberprmtopfile.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmcrdfiles.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmcrdfiles.py +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmcrdfiles.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmcrdfiles.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmparameterset.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmparameterset.py -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/amberprmtopfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/amberprmtopfile.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmpsffile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmpsffile.py -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmcrdfiles.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmcrdfiles.py -[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPE.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPE.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmparameterset.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmparameterset.py -[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPC.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/charmmpsffile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/charmmpsffile.py [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/checkpointreporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/checkpointreporter.py -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPC.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/checkpointreporter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/checkpointreporter.py +[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPC.pdb +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPC.pdb +[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPE.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPE.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DLPE.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DLPE.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DMPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DMPC.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DMPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DMPC.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DOPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DOPC.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DOPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DOPC.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DPPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DPPC.pdb -[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPC.pdb -[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPE.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPE.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/DPPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/DPPC.pdb [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/absinth.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/absinth.xml -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPC.pdb +[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPE.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPE.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPE.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPE.pdb +[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPC.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPC.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/absinth.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/absinth.xml +[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber03_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber03_obc.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/POPC.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/POPC.pdb +[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10.xml [ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber03.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber03.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber03.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber03.xml -[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber03_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber03_obc.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber03_obc.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber03_obc.xml -[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10.xml -[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10_obc.xml -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10_obc.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10_obc.xml -[ 2%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/DNA.OL15.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/DNA.OL15.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14-all.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14-all.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14-all.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14-all.xml -[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/DNA.bsc1.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/DNA.bsc1.xml -[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/RNA.OL3.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/RNA.OL3.xml +[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10_obc.xml +[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/DNA.OL15.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/DNA.OL15.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber10_obc.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber10_obc.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/DNA.OL15.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/DNA.OL15.xml +[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/DNA.bsc1.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/DNA.bsc1.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/DNA.bsc1.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/DNA.bsc1.xml -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/RNA.OL3.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/RNA.OL3.xml +[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/RNA.OL3.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/RNA.OL3.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/lipid17.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/lipid17.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/RNA.OL3.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/RNA.OL3.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/lipid17.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/lipid17.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/protein.ff14SB.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/protein.ff14SB.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/protein.ff14SB.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/protein.ff14SB.xml -[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/protein.ff15ipq.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/protein.ff15ipq.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/spce.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/spce.xml +[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/protein.ff15ipq.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/protein.ff15ipq.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/spce.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/spce.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip3p.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip3p.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/protein.ff15ipq.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/protein.ff15ipq.xml -[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip4pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip4pfb.xml -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/spce.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/spce.xml -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip3p.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip3p.xml -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip4pfb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip4pfb.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip3pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip3pfb.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip3p.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip3p.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip3pfb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip3pfb.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip4pew.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip4pew.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip4pew.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip4pew.xml +[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip4pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip4pfb.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber96.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber96.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber14/tip4pfb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber14/tip4pfb.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber96.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber96.xml -[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99_obc.xml -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99_obc.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99_obc.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber96_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber96_obc.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber96_obc.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber96_obc.xml [ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99Test.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99Test.xml -[ 4%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sb.xml -[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sbildn.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sbildn.xml -[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sbnmr.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sbnmr.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99Test.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99Test.xml +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sbildn.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sbildn.xml +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sb.xml +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99_obc.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99_obc.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99_obc.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99_obc.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sb.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sbildn.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sbildn.xml +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sbnmr.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sbnmr.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amber99sbnmr.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amber99sbnmr.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amberfb15.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amberfb15.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amberfb15.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amberfb15.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2009.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2009.xml -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2009.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2009.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2013.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2013.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2009.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2009.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2009_gk.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2009_gk.xml -[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2013_gk.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2013_gk.xml -[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36.xml -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2013_gk.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2013_gk.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2009_gk.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2009_gk.xml +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2013_gk.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2013_gk.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2013.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2013.xml -[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip3p-pme-f.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip3p-pme-f.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/amoeba2013_gk.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/amoeba2013_gk.xml +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36.xml +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/spce.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/spce.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36.xml -Scanning dependencies of target OpenMM [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip3p-pme-b.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip3p-pme-b.xml -[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/spce.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/spce.xml -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f CMakeFiles/OpenMM.dir/build.make CMakeFiles/OpenMM.dir/build cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/spce.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/spce.xml +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip3p-pme-f.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip3p-pme-f.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip3p-pme-b.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip3p-pme-b.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip3p-pme-f.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip3p-pme-f.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip4p2005.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip4p2005.xml -[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip5pew.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip5pew.xml -[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2013.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2013.xml -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip5p.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip5p.xml [ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip4pew.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip4pew.xml -[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/water.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/water.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip4p2005.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip4p2005.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip4pew.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip4pew.xml +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip5p.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip5p.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip5p.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip5p.xml -[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2019.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2019.xml -[ 8%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/AndersenThermostat.cpp -[ 8%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o -[ 8%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip5pew.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip5pew.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/tip5pew.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/tip5pew.xml +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/water.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/water.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm36/water.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm36/water.xml -[ 8%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o -[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/hydrogens.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/hydrogens.xml -[ 10%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o -[ 10%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2013.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2013.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2013.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2013.xml -[ 10%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2019.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2019.xml -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/AssertionUtilities.cpp +[ 6%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/hydrogens.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/hydrogens.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/hydrogens.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/hydrogens.xml -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/AndersenThermostatImpl.cpp -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/BrownianIntegrator.cpp -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMAPTorsionForce.cpp -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMAPTorsionForceImpl.cpp -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMMotionRemover.cpp -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/iamoeba.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/iamoeba.xml +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2019.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2019.xml +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/iamoeba.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/iamoeba.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/charmm_polar_2019.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/charmm_polar_2019.xml +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/residues.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/residues.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/iamoeba.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/iamoeba.xml -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/pdbNames.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/pdbNames.xml -[ 10%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/pdbNames.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/pdbNames.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/pdbNames.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/pdbNames.xml -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/residues.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/residues.xml -[ 10%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CompiledExpressionSet.cpp -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMMotionRemoverImpl.cpp -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/spce.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/spce.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/residues.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/residues.xml -[ 10%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/spce.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/spce.xml +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/spce.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/spce.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/spce.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/spce.pdb +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/spce.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/spce.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/spce.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/spce.xml -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/swm4ndp.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/swm4ndp.xml -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CompoundIntegrator.cpp +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/swm4ndp.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/swm4ndp.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/swm4ndp.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/swm4ndp.xml -[ 10%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/Context.cpp -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/test.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/test.pdb -[ 10%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/test.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/test.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/test.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/test.pdb -[ 10%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3p.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3p.pdb -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/ContextImpl.cpp -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3p.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3p.xml -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomAngleForce.cpp +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3p.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3p.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3p.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3p.pdb +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3p.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3p.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3p.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3p.xml -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3pfb.xml +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3pfb.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip3pfb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip3pfb.xml -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pew.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pew.pdb +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pew.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pew.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pew.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pew.pdb -[ 10%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomAngleForceImpl.cpp -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pew.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pew.xml +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pew.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pew.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pew.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pew.xml -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pfb.xml +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pfb.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pfb.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip4pfb.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip4pfb.xml -[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip5p.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip5p.pdb +[ 8%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip5p.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip5p.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip5p.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip5p.pdb +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/dcdfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/dcdfile.py [ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip5p.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip5p.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/data/tip5p.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/data/tip5p.xml -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/dcdfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/dcdfile.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/desmonddmsfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/desmonddmsfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/dcdfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/dcdfile.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/dcdreporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/dcdreporter.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/dcdreporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/dcdreporter.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/dcdreporter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/dcdreporter.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/desmonddmsfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/desmonddmsfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/desmonddmsfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/desmonddmsfile.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/element.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/element.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/element.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/element.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/gromacsgrofile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/gromacsgrofile.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/gromacstopfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/gromacstopfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/element.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/element.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/forcefield.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/forcefield.py -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/forcefield.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/forcefield.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/gromacsgrofile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/gromacsgrofile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/gromacsgrofile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/gromacsgrofile.py -[ 12%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomBondForce.cpp -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/gromacstopfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/gromacstopfile.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/forcefield.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/forcefield.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/gromacstopfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/gromacstopfile.py -[ 12%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomBondForceImpl.cpp -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/__init__.py +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/forcefield.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/forcefield.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/__init__.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/amber_file_parser.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/amber_file_parser.py -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/amber_file_parser.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/amber_file_parser.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/__init__.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/__init__.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/_charmmfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/_charmmfile.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/amber_file_parser.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/amber_file_parser.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/_charmmfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/_charmmfile.py +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/amber_file_parser.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/amber_file_parser.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/_charmmfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/_charmmfile.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/exceptions.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/exceptions.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/exceptions.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/exceptions.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/topologyobjects.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/topologyobjects.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/exceptions.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/exceptions.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/topologyobjects.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/topologyobjects.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/charmm/topologyobjects.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/charmm/topologyobjects.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/compiled.pyx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/compiled.pyx +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/compiled.pyx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/compiled.pyx cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/compiled.pyx /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/compiled.pyx -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/customgbforces.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/customgbforces.py -[ 12%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCVForce.cpp +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/customgbforces.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/customgbforces.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/customgbforces.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/customgbforces.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbstructure.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbstructure.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbstructure.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbstructure.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbstructure.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbstructure.py -[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/__init__.py +[ 10%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/__init__.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/__init__.py -[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxContainers.py -[ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCVForceImpl.cpp -[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxParser.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxParser.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxParser.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxParser.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxParser.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxParser.py -[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py -[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReader.py -[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/PdbxReaderTests.py -[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/__init__.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/reader/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/reader/__init__.py -[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriter.py -[ 16%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCentroidBondForce.cpp -[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/PdbxWriterTests.py -[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/pdbx/writer/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/pdbx/writer/__init__.py -[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/singleton.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/singleton.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/singleton.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/singleton.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/singleton.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/singleton.py -[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/unitcell.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/unitcell.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/unitcell.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/unitcell.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/internal/unitcell.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/internal/unitcell.py -[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/metadynamics.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/metadynamics.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/metadynamics.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/metadynamics.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/metadynamics.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/metadynamics.py -[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/modeller.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/modeller.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/modeller.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/modeller.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/modeller.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/modeller.py -[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbfile.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbfile.py -[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbreporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbreporter.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbreporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbreporter.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbreporter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbreporter.py -[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbxfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbxfile.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbxfile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbxfile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/pdbxfile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/pdbxfile.py -[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/simulatedtempering.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/simulatedtempering.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/simulatedtempering.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/simulatedtempering.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/simulatedtempering.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/simulatedtempering.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/simulation.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/simulation.py +[ 12%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/statedatareporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/statedatareporter.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/simulation.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/simulation.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/simulation.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/simulation.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/statedatareporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/statedatareporter.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/statedatareporter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/statedatareporter.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/topology.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/topology.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/topology.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/topology.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/app/topology.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/app/topology.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/mtsintegrator.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/mtsintegrator.py -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/mtsintegrator.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/mtsintegrator.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/vec3.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/vec3.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/vec3.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/vec3.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/mtsintegrator.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/mtsintegrator.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/vec3.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/vec3.py -[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCentroidBondForceImpl.cpp -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/testInstallation.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/testInstallation.py -[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/openmm/mtsintegrator.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm/mtsintegrator.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/testInstallation.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/testInstallation.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/testInstallation.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/testInstallation.py -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCompoundBondForce.cpp -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/__init__.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/__init__.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/__init__.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/__init__.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/__init__.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/basedimension.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/basedimension.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/basedimension.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/basedimension.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/baseunit.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/baseunit.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/basedimension.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/basedimension.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/baseunit.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/baseunit.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/constants.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/constants.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/baseunit.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/baseunit.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/constants.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/constants.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/constants.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/constants.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/doctests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/doctests.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/doctests.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/doctests.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/mymatrix.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/mymatrix.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/doctests.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/doctests.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/mymatrix.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/mymatrix.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/mymatrix.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/mymatrix.py -[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCompoundBondForceImpl.cpp -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/prefix.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/prefix.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/quantity.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/quantity.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/prefix.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/prefix.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/standard_dimensions.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/standard_dimensions.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/prefix.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/prefix.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/quantity.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/quantity.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/quantity.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/quantity.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/standard_dimensions.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/standard_dimensions.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/standard_dimensions.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/standard_dimensions.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit.py +[ 14%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_definitions.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_definitions.py +[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_math.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_math.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit.py -[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_definitions.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_definitions.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_definitions.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_definitions.py -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_math.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_math.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_math.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_math.py -[ 20%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomExternalForce.cpp -[ 20%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomExternalForceImpl.cpp -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_operators.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_operators.py +[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_operators.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_operators.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/simtk/unit/unit_operators.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/unit/unit_operators.py -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAPIUnits.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAPIUnits.py +[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAmberInpcrdFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberInpcrdFile.py +[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAPIUnits.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAPIUnits.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAPIUnits.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAPIUnits.py -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAmberInpcrdFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberInpcrdFile.py +Scanning dependencies of target OpenMM +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f CMakeFiles/OpenMM.dir/build.make CMakeFiles/OpenMM.dir/build +[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAmberPrmtopFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberPrmtopFile.py +[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestBytes.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestBytes.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAmberInpcrdFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberInpcrdFile.py -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAmberPrmtopFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberPrmtopFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestAmberPrmtopFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberPrmtopFile.py -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestBytes.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestBytes.py +[ 16%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestCharmmFiles.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCharmmFiles.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestBytes.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestBytes.py -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestCharmmFiles.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCharmmFiles.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestCharmmFiles.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCharmmFiles.py -[ 20%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestCheckpointReporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCheckpointReporter.py +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 16%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/AndersenThermostat.cpp +[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/AndersenThermostatImpl.cpp +[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o +[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestCheckpointReporter.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCheckpointReporter.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestCheckpointReporter.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCheckpointReporter.py -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomGBForce.cpp -[ 20%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestDcdFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDcdFile.py -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomGBForceImpl.cpp +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/BrownianIntegrator.cpp +[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestDcdFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDcdFile.py +[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o +[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestDcdFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDcdFile.py -[ 20%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestDesmondDMSFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDesmondDMSFile.py +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMAPTorsionForce.cpp +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/AssertionUtilities.cpp +[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o +[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestDesmondDMSFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDesmondDMSFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestDesmondDMSFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDesmondDMSFile.py -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomHbondForce.cpp -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestElement.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestElement.py +[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMAPTorsionForceImpl.cpp +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMMotionRemover.cpp +[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestElement.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestElement.py +[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestElement.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestElement.py -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestForceField.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceField.py +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CMMotionRemoverImpl.cpp +[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestForceField.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceField.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestForceField.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceField.py -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestForceGroups.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceGroups.py +[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestForceGroups.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceGroups.py +[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestForceGroups.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceGroups.py -[ 20%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomHbondForceImpl.cpp -[ 20%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomIntegrator.cpp -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGenerators.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGenerators.py +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CompiledExpressionSet.cpp +[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o +[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGenerators.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGenerators.py +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CompoundIntegrator.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGenerators.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGenerators.py -[ 20%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomIntegratorUtilities.cpp -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsGroFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsGroFile.py -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsGroFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsGroFile.py -[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsTopFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsTopFile.py +[ 18%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/Context.cpp +[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsGroFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsGroFile.py +[ 18%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsTopFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsTopFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsTopFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsTopFile.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestIntegrators.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestIntegrators.py +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestGromacsGroFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestGromacsGroFile.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestIntegrators.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestIntegrators.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestMetadynamics.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestMetadynamics.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestIntegrators.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestIntegrators.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestMetadynamics.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestMetadynamics.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestMetadynamics.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestMetadynamics.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestModeller.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestModeller.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestModeller.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestModeller.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestModeller.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestModeller.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestNumpyCompatibility.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestNumpyCompatibility.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestNumpyCompatibility.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestNumpyCompatibility.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestNumpyCompatibility.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestNumpyCompatibility.py -[ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomManyParticleForce.cpp -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPatches.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPatches.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPatches.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPatches.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPatches.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPatches.py -[ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomManyParticleForceImpl.cpp -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbFile.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbFile.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbxFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbxFile.py -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbxFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbxFile.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPickle.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPickle.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPickle.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPickle.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPickle.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPickle.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSimulatedTempering.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulatedTempering.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbxFile.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbxFile.py +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestPdbxFile.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbxFile.py +[ 20%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/ContextImpl.cpp +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSimulatedTempering.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulatedTempering.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSimulatedTempering.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulatedTempering.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSimulation.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulation.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSimulation.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulation.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSimulation.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulation.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSwigWrappers.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSwigWrappers.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSwigWrappers.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSwigWrappers.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestSwigWrappers.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSwigWrappers.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestTopology.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestTopology.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestTopology.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestTopology.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestTopology.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestTopology.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestUnitCell.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnitCell.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestUnitCell.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnitCell.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestUnitCell.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnitCell.py -[ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomNonbondedForce.cpp -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestUnits.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnits.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestUnits.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnits.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestUnits.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnits.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestVec3.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestVec3.py +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestVec3.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestVec3.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/TestVec3.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestVec3.py -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/pytest.ini to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/pytest.ini +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/pytest.ini to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/pytest.ini cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/pytest.ini /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/pytest.ini -[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/1T2Y.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/1T2Y.pdb +[ 20%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/1T2Y.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/1T2Y.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/1T2Y.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/1T2Y.pdb -[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.gro +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.gro cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.gro /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.gro -[ 24%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomNonbondedForceImpl.cpp -[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.top +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.top -[ 24%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomTorsionForce.cpp -[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/4TVP-dmj_wat-ion.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/4TVP-dmj_wat-ion.psf +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/4TVP-dmj_wat-ion.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/4TVP-dmj_wat-ion.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/4TVP-dmj_wat-ion.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/4TVP-dmj_wat-ion.psf -[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.pdb +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.pdb -[ 26%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomTorsionForceImpl.cpp -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.psf +[ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomAngleForce.cpp +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.psf -[ 26%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/Force.cpp -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/DNA_mbondi3.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.inpcrd +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/DNA_mbondi3.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.inpcrd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/DNA_mbondi3.inpcrd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.inpcrd -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/DNA_mbondi3.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.prmtop +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/DNA_mbondi3.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.prmtop cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/DNA_mbondi3.prmtop /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.prmtop -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/Mg_water.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.inpcrd +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/Mg_water.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.inpcrd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/Mg_water.inpcrd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.inpcrd -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/Mg_water.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.prmtop +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/Mg_water.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.prmtop cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/Mg_water.prmtop /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.prmtop -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.pdb +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.pdb -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.prm +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.prm cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.prm /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.prm -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.psf +[ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/MoS2.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/MoS2.psf -[ 26%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/ForceImpl.cpp -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomAngleForceImpl.cpp +[ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomBondForce.cpp +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.gro +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.gro cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.gro /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.gro -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.top -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.top -[ 26%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GBSAOBCForce.cpp -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml -[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.top +[ 22%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomBondForceImpl.cpp +[ 22%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml -[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForceImpl.cpp.o -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GBSAOBCForceImpl.cpp -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.crd +[ 24%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCVForce.cpp +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.crd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.crd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.crd -[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GayBerneForce.cpp -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.parm7 +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.parm7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.parm7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.parm7 -[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForceImpl.cpp.o -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.psf -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GayBerneForceImpl.cpp +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.psf -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.crd +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.crd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.crd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.crd -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.psf +[ 24%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCVForceImpl.cpp +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.psf -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.crd +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.crd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.crd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.crd -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.pdb +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.pdb -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.psf +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.psf -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.vpsf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.vpsf +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.vpsf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.vpsf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.vpsf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.vpsf -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.xpsf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.xpsf +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.xpsf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.xpsf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.xpsf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.xpsf -[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicAngleForce.cpp -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala_drude.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala_drude.pdb +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala_drude.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala_drude.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ala_ala_ala_drude.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala_drude.pdb -[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicAngleForceImpl.cpp -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-amoeba-forces.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-amoeba-forces.xml +[ 24%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-amoeba-forces.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-amoeba-forces.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-amoeba-forces.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-amoeba-forces.xml -[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicBondForce.cpp -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms +[ 26%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCentroidBondForce.cpp +[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms -[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.inpcrd +[ 26%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.inpcrd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.inpcrd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.inpcrd -[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicBondForceImpl.cpp -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.pdb +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.pdb -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.prmtop +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.prmtop cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.prmtop /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.prmtop -[ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/Integrator.cpp -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml -[ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LangevinIntegrator.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/LangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/LangevinIntegrator.cpp -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml +[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCentroidBondForceImpl.cpp +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml +[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCompoundBondForce.cpp +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml -[ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LangevinMiddleIntegrator.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/LangevinMiddleIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/LangevinMiddleIntegrator.cpp -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.inpcrd +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.inpcrd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.inpcrd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.inpcrd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.inpcrd -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.pdb +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.pdb -[ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LocalEnergyMinimizer.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/LocalEnergyMinimizer.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/LocalEnergyMinimizer.cpp -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.prmtop +[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomCompoundBondForceImpl.cpp +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.prmtop cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.prmtop /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.prmtop -[ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostat.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloAnisotropicBarostat.cpp -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/altlocs.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/altlocs.pdb +[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomExternalForce.cpp +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/altlocs.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/altlocs.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/altlocs.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/altlocs.pdb -[ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp -[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/amber.ncrst to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amber.ncrst +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/amber.ncrst to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amber.ncrst cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/amber.ncrst /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amber.ncrst -[ 32%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostat.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloBarostat.cpp -[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/amoeba-ion-in-water.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amoeba-ion-in-water.pdb +[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomExternalForceImpl.cpp +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/amoeba-ion-in-water.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amoeba-ion-in-water.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/amoeba-ion-in-water.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amoeba-ion-in-water.pdb -[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_lig.dms to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_lig.dms +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_lig.dms to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_lig.dms cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_lig.dms /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_lig.dms -[ 32%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostatImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloBarostatImpl.cpp -[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_rcpt.dms to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_rcpt.dms +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_rcpt.dms to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_rcpt.dms cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_rcpt.dms /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_rcpt.dms -[ 32%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostat.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloMembraneBarostat.cpp -[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bnz.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.gro +[ 28%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomGBForce.cpp +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bnz.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.gro cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bnz.gro /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.gro -[ 32%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp -[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bnz.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.top +[ 28%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bnz.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bnz.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.top -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bpti.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bpti.pdb +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bpti.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bpti.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/bpti.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bpti.pdb -[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NonbondedForce.cpp -[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NonbondedForceImpl.cpp -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/envi.str to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/envi.str +[ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomGBForceImpl.cpp +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/envi.str to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/envi.str cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/envi.str /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/envi.str -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.prm +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.prm cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.prm /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.prm -[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverChain.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverChain.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NoseHooverChain.cpp -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.rtf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.rtf +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.rtf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.rtf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.rtf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.rtf -[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverIntegrator.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NoseHooverIntegrator.cpp -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm22.par to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.par +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm22.par to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.par cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm22.par /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.par -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm22.rtf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.rtf +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm22.rtf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.rtf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/charmm22.rtf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.rtf -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.crd +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.crd to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.crd cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.crd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.crd -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.psf +[ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.psf +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomHbondForce.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.psf -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_box.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_box.rst7 -[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/OSRngSeed.cpp.o +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_box.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_box.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_box.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_box.rst7 -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/OSRngSeed.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/OSRngSeed.cpp -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_vels.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels.rst7 -[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForce.cpp.o +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_vels.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_vels.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels.rst7 -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/PeriodicTorsionForce.cpp -[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/PeriodicTorsionForceImpl.cpp -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_vels_box.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels_box.rst7 +[ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomHbondForceImpl.cpp +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_vels_box.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels_box.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crds_vels_box.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels_box.rst7 -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crdsonly.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crdsonly.rst7 +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crdsonly.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crdsonly.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/crdsonly.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crdsonly.rst7 -[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/RBTorsionForce.cpp -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/explicit.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/explicit.top +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/explicit.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/explicit.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/explicit.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/explicit.top -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff14ipq.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.parm7 +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff14ipq.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.parm7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff14ipq.parm7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.parm7 -[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/RBTorsionForceImpl.cpp -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff14ipq.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.rst7 +[ 30%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomIntegrator.cpp +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff14ipq.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff14ipq.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.rst7 -[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff_with_includes.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff_with_includes.xml +[ 30%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff_with_includes.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff_with_includes.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ff_with_includes.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff_with_includes.xml -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/formaldehyde.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/formaldehyde.pdb +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/formaldehyde.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/formaldehyde.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/formaldehyde.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/formaldehyde.pdb -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/gaffwat.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gaffwat.parm7 +[ 32%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomIntegratorUtilities.cpp +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/gaffwat.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gaffwat.parm7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/gaffwat.parm7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gaffwat.parm7 -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/gpcr.cif to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gpcr.cif +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/gpcr.cif to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gpcr.cif cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/gpcr.cif /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gpcr.cif -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/implicit.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/implicit.top +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/implicit.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/implicit.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/implicit.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/implicit.top -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/improper.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/improper.psf +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/improper.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/improper.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/improper.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/improper.psf -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/impropers_ordering_tetrapeptide.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/impropers_ordering_tetrapeptide.pdb +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/impropers_ordering_tetrapeptide.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/impropers_ordering_tetrapeptide.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/impropers_ordering_tetrapeptide.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/impropers_ordering_tetrapeptide.pdb -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/insertions.pdbx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/insertions.pdbx +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/insertions.pdbx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/insertions.pdbx cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/insertions.pdbx /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/insertions.pdbx -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ionic.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.gro +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ionic.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.gro cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ionic.gro /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.gro -[ 36%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RMSDForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/RMSDForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/RMSDForce.cpp -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ionic.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.top +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ionic.top to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.top cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ionic.top /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.top -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ions.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.pdb +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ions.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ions.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.pdb -[ 36%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RMSDForceImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/RMSDForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/RMSDForceImpl.cpp -[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ions.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.psf +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ions.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/ions.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.psf -[ 36%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/SplineFitter.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/SplineFitter.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/SplineFitter.cpp -[ 36%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/State.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/State.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/State.cpp -[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/System.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/System.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/System.cpp -[ 38%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit.pdb -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit.pdb -[ 38%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit-forces.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit-forces.xml +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit-forces.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit-forces.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit-forces.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit-forces.xml -[ 38%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol-box.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol-box.pdb -[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/TabulatedFunction.cpp.o +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit.pdb +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit.pdb +[ 32%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomManyParticleForce.cpp +[ 32%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomManyParticleForceImpl.cpp +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol-box.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol-box.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol-box.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol-box.pdb -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/TabulatedFunction.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/TabulatedFunction.cpp -[ 38%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol_ions.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.pdb +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol_ions.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol_ions.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.pdb -[ 38%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol_ions.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.psf +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol_ions.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/methanol_ions.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.psf -[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ThreadPool.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/ThreadPool.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/ThreadPool.cpp -[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VariableLangevinIntegrator.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VariableLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VariableLangevinIntegrator.cpp -[ 38%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/multichain.pdbx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/multichain.pdbx +[ 32%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/multichain.pdbx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/multichain.pdbx cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/multichain.pdbx /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/multichain.pdbx -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/nacl-water.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/nacl-water.pdb +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/nacl-water.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/nacl-water.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/nacl-water.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/nacl-water.pdb -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all22_prot.inp to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot.inp +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all22_prot.inp to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot.inp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all22_prot.inp /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot.inp -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all22_prot_with_mass.inp to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot_with_mass.inp +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all22_prot_with_mass.inp to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot_with_mass.inp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all22_prot_with_mass.inp /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot_with_mass.inp -[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VariableVerletIntegrator.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VariableVerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VariableVerletIntegrator.cpp -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all36_cgenff.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_cgenff.prm +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all36_cgenff.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_cgenff.prm cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all36_cgenff.prm /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_cgenff.prm -[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VectorExpression.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VectorExpression.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VectorExpression.cpp -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all36_prot.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_prot.prm +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all36_prot.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_prot.prm cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/par_all36_prot.prm /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_prot.prm -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/test_amber_ff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/test_amber_ff.xml +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/test_amber_ff.xml to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/test_amber_ff.xml cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/test_amber_ff.xml /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/test_amber_ff.xml -[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VerletIntegrator.cpp -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tip5p.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tip5p.pdb +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tip5p.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tip5p.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tip5p.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tip5p.pdb -[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/top_all36_cgenff.rtf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/top_all36_cgenff.rtf -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VirtualSite.cpp +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/top_all36_cgenff.rtf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/top_all36_cgenff.rtf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/top_all36_cgenff.rtf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/top_all36_cgenff.rtf -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/toppar_drude_master_protein_2013e.str to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_drude_master_protein_2013e.str +[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomNonbondedForce.cpp +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/toppar_drude_master_protein_2013e.str to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_drude_master_protein_2013e.str cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/toppar_drude_master_protein_2013e.str /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_drude_master_protein_2013e.str -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/toppar_water_ions.str to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_water_ions.str +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/toppar_water_ions.str to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_water_ions.str cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/toppar_water_ions.str /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_water_ions.str -[ 40%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o -c /build/openmm-7.5.0+dfsg/olla/src/Kernel.cpp -[ 40%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o -c /build/openmm-7.5.0+dfsg/olla/src/KernelImpl.cpp -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.gro +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.gro to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.gro cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.gro /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.gro -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdb +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.pdb to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdb cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.pdb /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdb -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.pdbx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdbx +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.pdbx to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdbx cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/triclinic.pdbx /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdbx -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.parm7 +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.parm7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.parm7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.parm7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.parm7 -[ 40%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o -c /build/openmm-7.5.0+dfsg/olla/src/Platform.cpp -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.rst7 +[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomNonbondedForceImpl.cpp +[ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomTorsionForce.cpp +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.rst7 to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.rst7 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.rst7 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.rst7 -[ 40%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern.cpp -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water-box-216.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water-box-216.prmtop +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water-box-216.prmtop to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water-box-216.prmtop cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water-box-216.prmtop /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water-box-216.prmtop -[ 40%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern_factorization.cpp -[ 40%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water_methanol.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.prm +[ 34%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water_methanol.prm to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.prm cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water_methanol.prm /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.prm -[ 42%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water_methanol.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.psf +[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water_methanol.psf to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.psf cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/systems/water_methanol.psf /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.psf -[ 42%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/validateConstraints.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateConstraints.py +[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/validateConstraints.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateConstraints.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/validateConstraints.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateConstraints.py -[ 42%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/validateModeller.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateModeller.py +[ 36%] CMake-copying file /build/openmm-7.5.0+dfsg/wrappers/python/tests/validateModeller.py to /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateModeller.py cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-7.5.0+dfsg/wrappers/python/tests/validateModeller.py /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateModeller.py -[ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_solver.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_solver.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern_solver.cpp -[ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_order.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_order.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern_order.cpp -[ 42%] Parsing OpenMM header files with doxygen... +[ 36%] Parsing OpenMM header files with doxygen... cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/src/swig_doxygen/doxygen && /usr/bin/doxygen -[ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/CompiledExpression.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/CompiledExpression.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/CompiledExpression.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/CustomTorsionForceImpl.cpp warning: Tag 'SYMBOL_CACHE_SIZE' at line 289 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 473 of file 'Doxyfile' has become obsolete. @@ -1600,12 +1537,6 @@ warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionTreeNode.cpp.o -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionProgram.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionProgram.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/ExpressionProgram.cpp -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/Operation.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionTreeNode.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/ExpressionTreeNode.cpp -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/Operation.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/Operation.cpp Doxygen version used: 1.9.1 Searching for include files... Searching for example files... @@ -1707,7 +1638,9 @@ Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/OpenMMException.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/PeriodicTorsionForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/PeriodicTorsionForce.h... -Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RBTorsionForce.h... +Preprocessing /build/openmm-7.5.0+dfsg/op[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/Force.cpp +enmmapi/include/openmm/RBTorsionForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RBTorsionForce.h... Preprocessing /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RMSDForce.h... Parsing file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RMSDForce.h... @@ -1817,12 +1750,8 @@ Adding members to member groups. Computing member references... Inheriting documentation... -Generating disk[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/ParsedExpression.cpp -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/Parser.cpp -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DHAVE_SSE2=1 -o CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/sfmt/src/SFMT.cpp +Generating disk[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/ForceImpl.cpp names... Adding source references... Adding xrefitems... @@ -1878,9 +1807,7 @@ Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NonbondedForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NoseHooverChain.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/NoseHooverIntegrator.h... -Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/OpenMMException.h.[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lbfgs/src/lbfgs.cpp -.. +Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/OpenMMException.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/PeriodicTorsionForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RBTorsionForce.h... Generating code for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/RMSDForce.h... @@ -1921,16 +1848,14 @@ Generating docs for file /build/openmm-7.5.0+dfsg/openmmapi/include/openmm/Units.h... Generating page documentation... Generating docs for page deprecated... -Generating group documentation...[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/hilbert/src/hilbert.cpp -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/csha1/src/SHA1.cpp -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferenceKernelFactory.cpp -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernels.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernels.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferenceKernels.cpp -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePlatform.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePlatform.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferencePlatform.cpp +Generating group documentation...[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GBSAOBCForce.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GBSAOBCForceImpl.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GayBerneForce.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/GayBerneForceImpl.cpp Generating class documentation... Generating namespace index... @@ -2003,11 +1928,7 @@ Generating docs for compound OpenMM::AmoebaStretchBendForce... Generating docs for compound OpenMM::AmoebaTorsionTorsionForce... Generating docs for compound OpenMM::AmoebaVdwForce... -Generatin[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceTabulatedFunction.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceTabulatedFunction.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferenceTabulatedFunction.cpp -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ObcParameters.cpp -g docs for compound OpenMM::AmoebaWcaDispersionForce... +Generating docs for compound OpenMM::AmoebaWcaDispersionForce... Generating docs for compound OpenMM::HippoNonbondedForce... Generating docs for compound OpenMM::RPMDIntegrator... Generating docs for compound OpenMM::RPMDMonteCarloBarostat... @@ -2080,7 +2001,8 @@ Generating XML output for class OpenMM::CustomIntegrator Generating XML output for class OpenMM::CustomManyParticleForce Generating XML output for class OpenMM::CustomNonbondedForce -Generating XML output for class[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp.o +Generating XML output for class[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicAngleForce.cpp OpenMM::CustomTorsionForce Generating XML output for class OpenMM::Discrete1DFunction Generating XML output for class OpenMM::Discrete2DFunction @@ -2141,9 +2063,8 @@ Generating XML output for class OpenMM::NoseHooverChain Generating XML output for class OpenMM::NoseHooverIntegrator Generating XML output for class OpenMM::OpenMMException -Generating XML output for class OpenMM::Amoeba/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp +Generating XML output for class OpenMM::Amoeba[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicAngleForceImpl.cpp OutOfPlaneBendForce::OutOfPlaneBendInfo Generating XML output for class OpenMM::OutOfPlaneSite Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce::ParticleInfo @@ -2297,12 +2218,14 @@ Running plantuml with JAVA... lookup cache used 3678/65536 hits=22901 misses=3916 finished... -[ 44%] Creating OpenMM Python swig input files... +[ 38%] Creating OpenMM Python swig input files... cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen && /usr/bin/python3.9 /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py -i /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/src/swig_doxygen/doxygen/xml -c swigInputConfig.py -d OpenMM_docstring.i -o OpenMMSwigHeaders.i -a swig_lib/python/pythonprepend.i -z swig_lib/python/pythonappend.i -v 4.0.2 -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp -[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicBondForce.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/HarmonicBondForceImpl.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/Integrator.cpp Integrator.getStepSize() returns unit.picosecond VariableVerletIntegrator.getMaximumStepSize() returns unit.picosecond VariableLangevinIntegrator.getTemperature() returns unit.kelvin @@ -2423,8 +2346,6 @@ GayBerneForce.getParticleParameters() returns ey as None GayBerneForce.getParticleParameters() returns ez as None DrudeIntegrator.getDrudeTemperature() returns unit.kelvin -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp DrudeIntegrator.getMaxDrudeDistance() returns unit.nanometer DrudeSCFIntegrator.getMinimizationErrorTolerance() returns unit.kilojoules_per_mole/unit.nanometer DrudeNoseHooverIntegrator.getMaxDrudeDistance() returns unit.nanometer @@ -2541,67 +2462,163 @@ AmoebaAngleForce.getAngleParameters() returns particle3 as None AmoebaAngleForce.getAngleParameters() returns length as unit.degree AmoebaAngleForce.getAngleParameters() returns quadraticK as unit.kilojoule_per_mole/(unit.radian*unit.radian) -[ 46%] Creating OpenMM Python module sources with swig... +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LangevinIntegrator.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/LangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/LangevinIntegrator.cpp +[ 38%] Creating OpenMM Python module sources with swig... cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen && /usr/bin/swig -python -c++ -outdir /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/python/simtk/openmm -o OpenMMSwig.cxx OpenMM.i -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceConstraints.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceConstraints.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceConstraints.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LangevinMiddleIntegrator.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/LangevinMiddleIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/LangevinMiddleIntegrator.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LocalEnergyMinimizer.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/LocalEnergyMinimizer.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/LocalEnergyMinimizer.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostat.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloAnisotropicBarostat.cpp +[ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. 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/build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloBarostat.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostatImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloBarostatImpl.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostat.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloMembraneBarostat.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include 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-c /build/openmm-7.5.0+dfsg/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NonbondedForce.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NonbondedForceImpl.cpp OpenMMSwigHeaders.i:2461: Warning 314: 'None' is a python keyword, renaming to '_None' -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include 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CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include 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-I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomCVForce.cpp -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverChain.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include 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/build/openmm-7.5.0+dfsg/openmmapi/src/NoseHooverChain.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverIntegrator.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/NoseHooverIntegrator.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/OSRngSeed.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit 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CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForceImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/PeriodicTorsionForceImpl.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include 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CMakeFiles/OpenMM.dir/openmmapi/src/RMSDForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/RMSDForceImpl.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/SplineFitter.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/SplineFitter.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/SplineFitter.cpp +[ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/State.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/State.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/State.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/System.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/System.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/System.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/TabulatedFunction.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/TabulatedFunction.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/TabulatedFunction.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ThreadPool.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include 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-DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/ThreadPool.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/ThreadPool.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VariableLangevinIntegrator.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include 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-DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat 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-DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VectorExpression.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VectorExpression.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VerletIntegrator.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 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-fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o -c /build/openmm-7.5.0+dfsg/openmmapi/src/VirtualSite.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o -c /build/openmm-7.5.0+dfsg/olla/src/Kernel.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o -c /build/openmm-7.5.0+dfsg/olla/src/KernelImpl.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o -c /build/openmm-7.5.0+dfsg/olla/src/Platform.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern_factorization.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_order.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_order.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern_order.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_solver.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_solver.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/quern/src/quern_solver.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/CompiledExpression.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/CompiledExpression.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/CompiledExpression.cpp +[ 42%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionProgram.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionProgram.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/ExpressionProgram.cpp OpenMMSwigHeaders.i:585: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:586: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:587: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionTreeNode.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionTreeNode.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/ExpressionTreeNode.cpp +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/Operation.cpp.o OpenMMSwigHeaders.i:613: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:614: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:615: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/Operation.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/Operation.cpp +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/ParsedExpression.cpp OpenMMSwigHeaders.i:635: Warning 453: Can't apply (OpenMM::SerializationNode &OUTPUT). No typemaps are defined. +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lepton/src/Parser.cpp +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o OpenMMSwigHeaders.i:722: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DHAVE_SSE2=1 -o CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/sfmt/src/SFMT.cpp OpenMMSwigHeaders.i:756: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/lbfgs/src/lbfgs.cpp OpenMMSwigHeaders.i:785: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:786: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:815: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/hilbert/src/hilbert.cpp OpenMMSwigHeaders.i:1008: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/csha1/src/SHA1.cpp +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferenceKernelFactory.cpp +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernels.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernels.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferenceKernels.cpp +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePlatform.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePlatform.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferencePlatform.cpp +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceTabulatedFunction.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceTabulatedFunction.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/ReferenceTabulatedFunction.cpp OpenMMSwigHeaders.i:1259: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1262: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1265: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1287: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1312: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1349: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ObcParameters.cpp OpenMMSwigHeaders.i:1409: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1442: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp OpenMMSwigHeaders.i:1501: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1583: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1667: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceAngleBondIxn.cpp +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceBondForce.cpp OpenMMSwigHeaders.i:1733: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. +[ 44%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceBondIxn.cpp +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceBrownianDynamics.cpp OpenMMSwigHeaders.i:1768: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1771: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. ./swig_lib/python/extend.i:372: Warning 509: Overloaded method OpenMM::CustomIntegrator::getPerDofVariable(int) const effectively ignored, OpenMMSwigHeaders.i:1769: Warning 509: as it is shadowed by OpenMM::CustomIntegrator::getPerDofVariable(int,std::vector< Vec3,std::allocator< Vec3 > > &) const. +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCCMAAlgorithm.cpp OpenMMSwigHeaders.i:1883: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1971: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp OpenMMSwigHeaders.i:2001: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2033: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2038: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2041: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2093: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCMAPTorsionIxn.cpp OpenMMSwigHeaders.i:2143: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2179: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2217: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. @@ -2610,7 +2627,11 @@ OpenMMSwigHeaders.i:2531: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2590: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2619: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceConstraints.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceConstraints.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceConstraints.cpp OpenMMSwigHeaders.i:2652: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomAngleIxn.cpp OpenMMSwigHeaders.i:2764: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2767: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2770: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. @@ -2618,12 +2639,26 @@ OpenMMSwigHeaders.i:2781: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2815: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2846: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. -[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp.o -/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp OpenMMSwigHeaders.i:2872: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2905: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomBondIxn.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 46%] Built target BuildModule +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCVForce.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomCVForce.cpp +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomCentroidBondIxn.cpp +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomCompoundBondIxn.cpp +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomExternalIxn.cpp +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp +[ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp.o +/usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomManyParticleIxn.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomManyParticleIxn.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceCustomManyParticleIxn.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp.o @@ -2665,8 +2700,8 @@ [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceRMSDForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceRMSDForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceRMSDForce.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceRbDihedralBond.cpp.o -[ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceSETTLEAlgorithm.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceRbDihedralBond.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceRbDihedralBond.cpp +[ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceSETTLEAlgorithm.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceSETTLEAlgorithm.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceSETTLEAlgorithm.cpp [ 51%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference/ReferenceStochasticDynamics.cpp @@ -2818,9 +2853,9 @@ /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/logging.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/logging.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/operand.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/operand.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/operand.cpp -[ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/regalloc.cpp.o -[ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/osutils.cpp.o +[ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/osutils.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/osutils.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/osutils.cpp +[ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/regalloc.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/regalloc.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/regalloc.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/runtime.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMM_EXPORTS -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/runtime.cpp.o -c /build/openmm-7.5.0+dfsg/libraries/asmjit/base/runtime.cpp @@ -2861,228 +2896,233 @@ make -f platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/depend make -f platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/depend make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/depend -make -f platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/depend -make -f platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/DependInfo.cmake --color= +make -f platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/DependInfo.cmake --color= -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/DependInfo.cmake --color= -make -f platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/depend +make -f platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/DependInfo.cmake --color= -make -f platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/depend +make -f platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests 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"/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/DependInfo.cmake --color= +make -f 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platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/DependInfo.cmake --color= +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/depend.internal". +make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend +Scanning dependencies of target TestReferenceVerletIntegrator +Scanning dependencies of target TestReferenceVariableVerletIntegrator +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/depend.internal". +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/depend.internal". -make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/depend.internal". -Scanning dependencies of target TestReferenceVariableVerletIntegrator +make -f platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build +Scanning dependencies of target TestReferenceVirtualSites +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/depend.internal". -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/depend.internal". Scanning dependencies of target TestReferenceRMSDForce make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/DependInfo.cmake --color= -Scanning dependencies of target TestReferenceRandom -make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/build -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/depend.internal". -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target TestReferenceVerletIntegrator -Scanning dependencies of target TestReferenceVirtualSites -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/depend.internal". -Dependee 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'/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/build -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/depend.internal". +Scanning dependencies of target TestReferencePeriodicTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/depend.internal". Scanning dependencies of target TestReferenceNoseHooverIntegrator +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/depend.internal". +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target TestReferenceMonteCarloBarostat +Scanning dependencies of target TestReferenceNeighborList make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o +make -f platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVariableVerletIntegrator.cpp +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVerletIntegrator.cpp make -f platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend.internal". -Scanning dependencies of target TestReferenceMonteCarloBarostat -make -f platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build -[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o +[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o Scanning dependencies of target TestReferenceCustomCompoundBondForce -[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVariableVerletIntegrator.cpp +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVirtualSites.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceRMSDForce.cpp make -f platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build +[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceRandom.cpp +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVerletIntegrator.cpp -[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceRMSDForce.cpp -[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceRBTorsionForce.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferencePeriodicTorsionForce.cpp -[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o +[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o +[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceNoseHooverIntegrator.cpp make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/depend +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceRBTorsionForce.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/DependInfo.cmake --color= -[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVirtualSites.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceRandom.cpp +[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/depend +make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/depend +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferencePeriodicTorsionForce.cpp +[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceNeighborList.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/DependInfo.cmake --color= -make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/DependInfo.cmake --color= -make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/DependInfo.cmake --color= -[ 59%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/DependInfo.cmake --color= -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceNeighborList.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomCompoundBondForce.cpp +[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceMonteCarloBarostat.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceNoseHooverIntegrator.cpp +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomManyParticleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/depend.internal". +Scanning dependencies of target TestReferenceHarmonicAngleForce +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/depend.internal". -make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build Scanning dependencies of target TestReferenceCustomNonbondedForce -Scanning dependencies of target TestReferenceCustomBondForce -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend.internal". -Scanning dependencies of target TestReferenceHarmonicAngleForce make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build -Scanning dependencies of target TestReferenceLangevinMiddleIntegrator -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build +Scanning dependencies of target TestReferenceCustomBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build +make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomManyParticleForce.cpp -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceHarmonicAngleForce.cpp [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomNonbondedForce.cpp [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomNonbondedForce.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomBondForce.cpp -[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceHarmonicAngleForce.cpp -[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceLangevinMiddleIntegrator.cpp [ 61%] Linking CXX executable ../../../TestReferenceNeighborList cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNeighborList.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -o ../../../TestReferenceNeighborList -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 61%] Built target TestReferenceNeighborList +make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend.internal". +Scanning dependencies of target TestReferenceLangevinMiddleIntegrator +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceLangevinMiddleIntegrator.cpp [ 61%] Linking CXX executable ../../../TestReferenceRandom cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRandom.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -o ../../../TestReferenceNeighborList -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o -o ../../../TestReferenceRandom -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 61%] Linking CXX executable ../../../TestReferencePeriodicTorsionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferencePeriodicTorsionForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -o ../../../TestReferencePeriodicTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target TestReferenceRandom make -f platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/depend -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/depend.internal". -[ 61%] Built target TestReferenceNeighborList Scanning dependencies of target TestReferenceCompoundIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCompoundIntegrator.cpp +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 61%] Linking CXX executable ../../../TestReferenceRMSDForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRMSDForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -o ../../../TestReferenceRMSDForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 61%] Built target TestReferencePeriodicTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/depend.internal". -[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o Scanning dependencies of target TestReferenceCustomExternalForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCompoundIntegrator.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomExternalForce.cpp -[ 61%] Linking CXX executable ../../../TestReferenceRBTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRBTorsionForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -o ../../../TestReferenceRBTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 61%] Linking CXX executable ../../../TestReferenceVerletIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVerletIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o -o ../../../TestReferenceVerletIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 61%] Linking CXX executable ../../../TestReferenceHarmonicAngleForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHarmonicAngleForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -o ../../../TestReferenceHarmonicAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 61%] Linking CXX executable ../../../TestReferenceRBTorsionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRBTorsionForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -o ../../../TestReferenceRBTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Linking CXX executable ../../../TestReferenceMonteCarloBarostat cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloBarostat.dir/link.txt --verbose=1 -[ 61%] Built target TestReferenceRBTorsionForce +[ 61%] Built target TestReferenceRMSDForce +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -o ../../../TestReferenceMonteCarloBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make -f platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -o ../../../TestReferenceMonteCarloBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/depend.internal". Scanning dependencies of target TestReferenceCheckpoints @@ -3096,48 +3136,45 @@ make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/depend.internal". +[ 61%] Built target TestReferenceRBTorsionForce +make -f platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/depend Scanning dependencies of target TestReferenceVariableLangevinIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/DependInfo.cmake --color= make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build +[ 61%] Linking CXX executable ../../../TestReferenceHarmonicAngleForce make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHarmonicAngleForce.dir/link.txt --verbose=1 +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/depend.internal". +Scanning dependencies of target TestReferenceCMMotionRemover make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceVariableLangevinIntegrator.cpp +make -f platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -o ../../../TestReferenceHarmonicAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCMMotionRemover.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target TestReferenceMonteCarloBarostat -make -f platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/DependInfo.cmake --color= -[ 61%] Built target TestReferenceHarmonicAngleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/DependInfo.cmake --color= -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/depend.internal". -Scanning dependencies of target TestReferenceCMMotionRemover -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/depend.internal". -make -f platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build Scanning dependencies of target TestReferenceCustomAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build -[ 61%] Linking CXX executable ../../../TestReferenceRMSDForce make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRMSDForce.dir/link.txt --verbose=1 -[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCMMotionRemover.cpp [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomAngleForce.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -o ../../../TestReferenceRMSDForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 61%] Linking CXX executable ../../../TestReferencePeriodicTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferencePeriodicTorsionForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -o ../../../TestReferencePeriodicTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 61%] Built target TestReferenceRMSDForce +[ 61%] Built target TestReferenceHarmonicAngleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/DependInfo.cmake --color= @@ -3148,41 +3185,44 @@ make -f platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCMAPTorsionForce.cpp -[ 61%] Built target TestReferencePeriodicTorsionForce +[ 61%] Linking CXX executable ../../../TestReferenceCMMotionRemover +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCMMotionRemover.dir/link.txt --verbose=1 +[ 63%] Linking CXX executable ../../../TestReferenceVariableVerletIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVariableVerletIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -o ../../../TestReferenceCMMotionRemover -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o -o ../../../TestReferenceVariableVerletIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 63%] Built target TestReferenceCMMotionRemover make -f platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/depend.internal". +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target TestReferenceBrownianIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/build -[ 61%] Linking CXX executable ../../../TestReferenceCustomBondForce make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomBondForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -o ../../../TestReferenceCustomBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 61%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceBrownianIntegrator.cpp -[ 63%] Linking CXX executable ../../../TestReferenceVariableVerletIntegrator -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVariableVerletIntegrator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o -o ../../../TestReferenceVariableVerletIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceVariableVerletIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/DependInfo.cmake --color= +[ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceBrownianIntegrator.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/depend.internal". Scanning dependencies of target TestReferenceAndersenThermostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceAndersenThermostat.cpp -[ 63%] Built target TestReferenceCustomBondForce +[ 63%] Linking CXX executable ../../../TestReferenceVirtualSites +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVirtualSites.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o -o ../../../TestReferenceVirtualSites -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 63%] Built target TestReferenceVirtualSites make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/DependInfo.cmake --color= @@ -3210,46 +3250,46 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomIntegrator.cpp -[ 67%] Linking CXX executable ../../../TestReferenceCheckpoints -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCheckpoints.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o -o ../../../TestReferenceCheckpoints -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 67%] Linking CXX executable ../../../TestReferenceCMMotionRemover -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCMMotionRemover.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -o ../../../TestReferenceCMMotionRemover -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 65%] Linking CXX executable ../../../TestReferenceCustomBondForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomBondForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -o ../../../TestReferenceCustomBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target TestReferenceCMMotionRemover +[ 65%] Built target TestReferenceCustomBondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/DependInfo.cmake --color= -[ 67%] Built target TestReferenceCheckpoints -make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/depend.internal". Scanning dependencies of target TestReferenceLangevinIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 67%] Linking CXX executable ../../../TestReferenceCustomManyParticleForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomManyParticleForce.dir/link.txt --verbose=1 +[ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceLangevinIntegrator.cpp +[ 65%] Linking CXX executable ../../../TestReferenceCustomCompoundBondForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCompoundBondForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -o ../../../TestReferenceCustomCompoundBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 65%] Linking CXX executable ../../../TestReferenceCMAPTorsionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCMAPTorsionForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -o ../../../TestReferenceCMAPTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 65%] Built target TestReferenceCustomCompoundBondForce +make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/depend.internal". Scanning dependencies of target TestReferenceCustomTorsionForce -[ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceLangevinIntegrator.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -o ../../../TestReferenceCustomManyParticleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o +[ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomTorsionForce.cpp -[ 67%] Linking CXX executable ../../../TestReferenceVirtualSites -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVirtualSites.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o -o ../../../TestReferenceVirtualSites -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 67%] Linking CXX executable ../../../TestReferenceCheckpoints +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCheckpoints.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o -o ../../../TestReferenceCheckpoints -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target TestReferenceCustomManyParticleForce +[ 67%] Built target TestReferenceCMAPTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/DependInfo.cmake --color= @@ -3259,10 +3299,16 @@ make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceDispersionPME.cpp -[ 67%] Built target TestReferenceVirtualSites +[ 67%] Linking CXX executable ../../../TestReferenceNoseHooverIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNoseHooverIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -o ../../../TestReferenceNoseHooverIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 67%] Linking CXX executable ../../../TestReferenceCustomExternalForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomExternalForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -o ../../../TestReferenceCustomExternalForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 67%] Built target TestReferenceCustomExternalForce make -f platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/DependInfo.cmake --color= @@ -3274,65 +3320,56 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceNonbondedForce.cpp -[ 67%] Linking CXX executable ../../../TestReferenceCustomExternalForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomExternalForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -o ../../../TestReferenceCustomExternalForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 67%] Linking CXX executable ../../../TestReferenceCMAPTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCMAPTorsionForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -o ../../../TestReferenceCMAPTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 67%] Linking CXX executable ../../../TestReferenceCustomCompoundBondForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCompoundBondForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -o ../../../TestReferenceCustomCompoundBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target TestReferenceCustomExternalForce +[ 67%] Built target TestReferenceNoseHooverIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/depend.internal". -[ 67%] Built target TestReferenceCMAPTorsionForce Scanning dependencies of target TestReferenceCustomGBForce -make -f platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend.internal". +[ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomGBForce.cpp +[ 67%] Linking CXX executable ../../../TestReferenceAndersenThermostat +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAndersenThermostat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -o ../../../TestReferenceAndersenThermostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 67%] Linking CXX executable ../../../TestReferenceCustomAngleForce -Scanning dependencies of target TestReferenceKineticEnergy -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomAngleForce.dir/link.txt --verbose=1 -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o -o ../../../TestReferenceCustomAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomGBForce.cpp -[ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceKineticEnergy.cpp -[ 67%] Linking CXX executable ../../../TestReferenceBrownianIntegrator -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceBrownianIntegrator.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -o ../../../TestReferenceBrownianIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 67%] Built target TestReferenceCustomCompoundBondForce +[ 67%] Built target TestReferenceCustomAngleForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend +[ 67%] Built target TestReferenceAndersenThermostat +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/DependInfo.cmake --color= make -f platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend.internal". +Scanning dependencies of target TestReferenceKineticEnergy +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/depend.internal". +[ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceKineticEnergy.cpp Scanning dependencies of target TestReferenceEwald make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceEwald.cpp -[ 67%] Linking CXX executable ../../../TestReferenceNoseHooverIntegrator -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNoseHooverIntegrator.dir/link.txt --verbose=1 +[ 67%] Linking CXX executable ../../../TestReferenceCompoundIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCompoundIntegrator.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -o ../../../TestReferenceNoseHooverIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 67%] Built target TestReferenceCustomAngleForce +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -o ../../../TestReferenceCompoundIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 67%] Built target TestReferenceCheckpoints make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/DependInfo.cmake --color= @@ -3341,42 +3378,42 @@ Scanning dependencies of target TestReferenceMonteCarloMembraneBarostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -[ 67%] Built target TestReferenceBrownianIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceMonteCarloMembraneBarostat.cpp +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 67%] Built target TestReferenceCompoundIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/DependInfo.cmake --color= -[ 67%] Linking CXX executable ../../../TestReferenceVariableLangevinIntegrator Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/depend.internal". -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/link.txt --verbose=1 Scanning dependencies of target TestReferenceCustomCentroidBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -o ../../../TestReferenceVariableLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomCentroidBondForce.cpp +[ 67%] Linking CXX executable ../../../TestReferenceCustomManyParticleForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomManyParticleForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -o ../../../TestReferenceCustomManyParticleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target TestReferenceNoseHooverIntegrator +[ 67%] Built target TestReferenceCustomManyParticleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/DependInfo.cmake --color= -[ 67%] Linking CXX executable ../../../TestReferenceAndersenThermostat -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAndersenThermostat.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/depend.internal". Scanning dependencies of target TestReferenceLocalEnergyMinimizer make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -o ../../../TestReferenceAndersenThermostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceLocalEnergyMinimizer.cpp +[ 67%] Linking CXX executable ../../../TestReferenceVariableLangevinIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -o ../../../TestReferenceVariableLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target TestReferenceVariableLangevinIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' @@ -3389,8 +3426,11 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceGayBerneForce.cpp +[ 67%] Linking CXX executable ../../../TestReferenceBrownianIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceBrownianIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -o ../../../TestReferenceBrownianIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target TestReferenceAndersenThermostat +[ 67%] Built target TestReferenceBrownianIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/DependInfo.cmake --color= @@ -3402,15 +3442,12 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceSettle.cpp -[ 67%] Linking CXX executable ../../../TestReferenceCompoundIntegrator -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCompoundIntegrator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -o ../../../TestReferenceCompoundIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Linking CXX executable ../../../TestReferenceKineticEnergy cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceKineticEnergy.dir/link.txt --verbose=1 -[ 69%] Built target TestReferenceCompoundIntegrator -make -f platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/depend /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -o ../../../TestReferenceKineticEnergy -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 69%] Built target TestReferenceKineticEnergy +make -f platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/depend.internal". @@ -3421,8 +3458,14 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceGBSAOBCForce.cpp +[ 69%] Linking CXX executable ../../../TestReferenceLangevinIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLangevinIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -o ../../../TestReferenceLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 69%] Linking CXX executable ../../../TestReferenceMonteCarloMembraneBarostat +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -o ../../../TestReferenceMonteCarloMembraneBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target TestReferenceKineticEnergy +[ 69%] Built target TestReferenceLangevinIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/DependInfo.cmake --color= @@ -3434,9 +3477,6 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceHarmonicBondForce.cpp -[ 69%] Linking CXX executable ../../../TestReferenceMonteCarloMembraneBarostat -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -o ../../../TestReferenceMonteCarloMembraneBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target TestReferenceMonteCarloMembraneBarostat make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/depend @@ -3450,17 +3490,11 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceCustomCVForce.cpp -[ 69%] Linking CXX executable ../../../TestReferenceSettle -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceSettle.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -o ../../../TestReferenceSettle -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 69%] Linking CXX executable ../../../TestReferenceCustomHbondForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomHbondForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o -o ../../../TestReferenceCustomHbondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 69%] Linking CXX executable ../../../TestReferenceLangevinIntegrator -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLangevinIntegrator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -o ../../../TestReferenceLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 69%] Linking CXX executable ../../../TestReferenceCustomTorsionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomTorsionForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -o ../../../TestReferenceCustomTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target TestReferenceSettle +[ 69%] Built target TestReferenceCustomTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/DependInfo.cmake --color= @@ -3472,46 +3506,46 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/reference/tests/TestReferenceMonteCarloAnisotropicBarostat.cpp +[ 69%] Linking CXX executable ../../../TestReferenceSettle +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceSettle.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -o ../../../TestReferenceSettle -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target TestReferenceCustomHbondForce +[ 69%] Built target TestReferenceSettle make -f platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build.make platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/sharedTarget /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/DependInfo.cmake --color= -[ 69%] Linking CXX executable ../../../TestReferenceCustomTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomTorsionForce.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/depend.internal". -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -o ../../../TestReferenceCustomTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target OpenMMCPU -[ 69%] Built target TestReferenceLangevinIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build.make platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build -make -f plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build.make plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/DependInfo.cmake --color= [ 69%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuBondForce.cpp +[ 69%] Linking CXX executable ../../../TestReferenceLocalEnergyMinimizer +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -o ../../../TestReferenceLocalEnergyMinimizer -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 69%] Built target TestReferenceLocalEnergyMinimizer +make -f plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build.make plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/depend.internal". Scanning dependencies of target OpenMMAmoeba make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build.make plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 69%] Linking CXX executable ../../../TestReferenceLocalEnergyMinimizer -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/link.txt --verbose=1 [ 71%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaAngleForce.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -o ../../../TestReferenceLocalEnergyMinimizer -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 71%] Linking CXX executable ../../../TestReferenceCustomHbondForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomHbondForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o -o ../../../TestReferenceCustomHbondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Linking CXX executable ../../../TestReferenceCustomNonbondedForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomNonbondedForce.dir/link.txt --verbose=1 -[ 71%] Built target TestReferenceCustomTorsionForce +[ 71%] Built target TestReferenceCustomHbondForce make -f plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/build.make plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/rpmd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -o ../../../TestReferenceCustomNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/depend.internal". Scanning dependencies of target OpenMMRPMD @@ -3520,25 +3554,35 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMD_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/src/RPMDIntegrator.cpp +[ 71%] Linking CXX executable ../../../TestReferenceGayBerneForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceGayBerneForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -o ../../../TestReferenceGayBerneForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 71%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuCustomGBForce.cpp +[ 71%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForceImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaAngleForceImpl.cpp +[ 71%] Linking CXX executable ../../../TestReferenceCustomNonbondedForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomNonbondedForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -o ../../../TestReferenceCustomNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Built target TestReferenceLocalEnergyMinimizer +[ 71%] Built target TestReferenceGayBerneForce make -f plugins/drude/CMakeFiles/OpenMMDrude.dir/build.make plugins/drude/CMakeFiles/OpenMMDrude.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/OpenMMDrude.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/OpenMMDrude.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/OpenMMDrude.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/OpenMMDrude.dir/depend.internal". make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 71%] Built target TestReferenceCustomNonbondedForce +make -f serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build.make serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/depend Scanning dependencies of target OpenMMDrude make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/CMakeFiles/OpenMMDrude.dir/build.make plugins/drude/CMakeFiles/OpenMMDrude.dir/build -[ 71%] Built target TestReferenceCustomNonbondedForce -make -f serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build.make serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/DependInfo.cmake --color= -[ 71%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/depend.internal". +[ 71%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeForce.cpp Scanning dependencies of target TestSerializeTabulatedFunctions make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' @@ -3546,126 +3590,120 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeTabulatedFunctions.cpp -[ 71%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForceImpl.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaAngleForceImpl.cpp -[ 71%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o -[ 71%] Linking CXX executable ../../../TestReferenceHarmonicBondForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuCustomGBForce.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHarmonicBondForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -o ../../../TestReferenceHarmonicBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 71%] Linking CXX executable ../../../TestReferenceGBSAOBCForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceGBSAOBCForce.dir/link.txt --verbose=1 +[ 71%] Linking CXX executable ../../../TestReferenceMonteCarloAnisotropicBarostat +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -o ../../../TestReferenceMonteCarloAnisotropicBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -o ../../../TestReferenceGBSAOBCForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 71%] Built target TestReferenceHarmonicBondForce +[ 71%] Built target TestReferenceMonteCarloAnisotropicBarostat make -f serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/depend.internal". +[ 71%] Linking CXX executable ../../../TestReferenceHarmonicBondForce Scanning dependencies of target TestSerializeCustomHbondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHarmonicBondForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -o ../../../TestReferenceHarmonicBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../libOpenMM.so.7.5 -ldl -lpthread [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeForceImpl.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomHbondForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Built target TestReferenceGBSAOBCForce +[ 71%] Built target TestReferenceHarmonicBondForce make -f serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/DependInfo.cmake --color= -[ 71%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaBondForce.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/depend.internal". +[ 71%] Linking CXX executable ../../../TestReferenceGBSAOBCForce Scanning dependencies of target TestSerializeCustomManyParticleForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceGBSAOBCForce.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -o ../../../TestReferenceGBSAOBCForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomManyParticleForce.cpp -[ 71%] Linking CXX executable ../../../TestReferenceNonbondedForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNonbondedForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -o ../../../TestReferenceNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 71%] Linking CXX executable ../../../TestReferenceMonteCarloAnisotropicBarostat -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -o ../../../TestReferenceMonteCarloAnisotropicBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 71%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaBondForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Built target TestReferenceNonbondedForce +[ 71%] Built target TestReferenceGBSAOBCForce make -f serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/depend -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/DependInfo.cmake --color= -[ 71%] Built target TestReferenceMonteCarloAnisotropicBarostat -make -f serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/depend Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/depend.internal". -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/DependInfo.cmake --color= Scanning dependencies of target TestSerializeCustomCVForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomCVForce.cpp +[ 71%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeForceImpl.cpp [ 71%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaBondForceImpl.cpp +[ 71%] Linking CXX executable ../../../TestReferenceCustomCentroidBondForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCentroidBondForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -o ../../../TestReferenceCustomCentroidBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 71%] Linking CXX executable ../../../TestReferenceCustomGBForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomGBForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -o ../../../TestReferenceCustomGBForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build +[ 71%] Built target TestReferenceCustomGBForce +make -f serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomCVForce.cpp [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomAngleForce.cpp -[ 71%] Linking CXX executable ../../../TestReferenceCustomGBForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomGBForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -o ../../../TestReferenceCustomGBForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 71%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMD_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/src/RPMDMonteCarloBarostat.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Built target TestReferenceCustomGBForce +[ 71%] Built target TestReferenceCustomCentroidBondForce make -f serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/DependInfo.cmake --color= +[ 71%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMD_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/src/RPMDMonteCarloBarostat.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/depend.internal". Scanning dependencies of target TestSerializeCMMotionRemover make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Linking CXX executable ../../../TestReferenceCustomCentroidBondForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCentroidBondForce.dir/link.txt --verbose=1 [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCMMotionRemover.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -o ../../../TestReferenceCustomCentroidBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 71%] Linking CXX executable ../../../TestReferenceCustomCVForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCVForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o -o ../../../TestReferenceCustomCVForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Built target TestReferenceCustomCentroidBondForce +[ 71%] Built target TestReferenceCustomCVForce make -f serialization/tests/CMakeFiles/TestSerializeSystem.dir/build.make serialization/tests/CMakeFiles/TestSerializeSystem.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeSystem.dir/DependInfo.cmake --color= -[ 71%] Linking CXX executable ../../../TestReferenceCustomIntegrator -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomIntegrator.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeSystem.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeSystem.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeSystem.dir/depend.internal". Scanning dependencies of target TestSerializeSystem make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeSystem.dir/build.make serialization/tests/CMakeFiles/TestSerializeSystem.dir/build -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -o ../../../TestReferenceCustomIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeHelpers.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o [ 71%] Building CXX object serialization/tests/CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMD_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeSystem.cpp -[ 71%] Built target TestReferenceCustomCVForce +[ 71%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMD_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp +[ 71%] Linking CXX executable ../../../TestReferenceNonbondedForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNonbondedForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -o ../../../TestReferenceNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 71%] Linking CXX executable ../../TestSerializeCustomCVForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCVForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -o ../../TestSerializeCustomCVForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 71%] Built target TestReferenceNonbondedForce make -f serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/DependInfo.cmake --color= @@ -3673,15 +3711,12 @@ Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 71%] Linking CXX executable ../../../TestReferenceGayBerneForce make -f serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceGayBerneForce.dir/link.txt --verbose=1 make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -o ../../../TestReferenceGayBerneForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomBondForce.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target TestReferenceCustomIntegrator +[ 73%] Built target TestSerializeCustomCVForce make -f serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/DependInfo.cmake --color= @@ -3691,10 +3726,13 @@ make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o +[ 73%] Linking CXX executable ../../TestSerializeCustomManyParticleForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomManyParticleForce.dir/link.txt --verbose=1 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeGayBerneForce.cpp -[ 73%] Built target TestReferenceGayBerneForce +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -o ../../TestSerializeCustomManyParticleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 73%] Built target TestSerializeCustomManyParticleForce make -f serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/DependInfo.cmake --color= @@ -3704,54 +3742,49 @@ make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 73%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializePeriodicTorsionForce.cpp +[ 73%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp +[ 73%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeHelpers.cpp [ 73%] Linking CXX executable ../../TestSerializeCMMotionRemover cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCMMotionRemover.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o -o ../../TestSerializeCMMotionRemover -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 73%] Linking CXX executable ../../TestSerializeCustomHbondForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomHbondForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -o ../../TestSerializeCustomHbondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target TestSerializeCMMotionRemover make -f serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/DependInfo.cmake --color= -[ 73%] Linking CXX executable ../../TestSerializeCustomManyParticleForce Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/depend.internal". Scanning dependencies of target TestSerializeRBTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomManyParticleForce.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -o ../../TestSerializeCustomManyParticleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeRBTorsionForce.cpp -[ 73%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp -[ 73%] Built target TestSerializeCustomManyParticleForce +[ 73%] Built target TestSerializeCustomHbondForce make -f serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/DependInfo.cmake --color= -[ 73%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeIntegrator.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomCompoundBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 73%] Linking CXX executable ../../TestSerializeCustomCVForce make -f serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCVForce.dir/link.txt --verbose=1 make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 73%] Linking CXX executable ../../../TestReferenceDispersionPME +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDispersionPME.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -o ../../../TestReferenceDispersionPME -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -o ../../TestSerializeCustomCVForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomCompoundBondForce.cpp -[ 73%] Linking CXX executable ../../TestSerializeCustomAngleForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomAngleForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -o ../../TestSerializeCustomAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target TestSerializeCustomCVForce +[ 73%] Built target TestReferenceDispersionPME make -f serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/DependInfo.cmake --color= @@ -3763,8 +3796,16 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomCentroidBondForce.cpp +[ 73%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp +[ 73%] Linking CXX executable ../../TestSerializeGayBerneForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeGayBerneForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -o ../../TestSerializeGayBerneForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 73%] Linking CXX executable ../../TestSerializeCustomBondForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomBondForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -o ../../TestSerializeCustomBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target TestSerializeCustomAngleForce +[ 73%] Built target TestSerializeCustomBondForce make -f serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/DependInfo.cmake --color= @@ -3776,46 +3817,44 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeAndersenThermostat.cpp -[ 73%] Linking CXX executable ../../TestSerializePeriodicTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializePeriodicTorsionForce.dir/link.txt --verbose=1 -[ 73%] Linking CXX executable ../../TestSerializeCustomBondForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomBondForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -o ../../TestSerializeCustomBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -[ 73%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeLangevinIntegrator.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -o ../../TestSerializePeriodicTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -[ 73%] Linking CXX executable ../../TestSerializeCustomHbondForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomHbondForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -o ../../TestSerializeCustomHbondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target TestSerializeCustomBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 73%] Built target TestSerializeGayBerneForce make -f serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/DependInfo.cmake --color= -[ 73%] Built target TestSerializePeriodicTorsionForce -make -f serialization/tests/CMakeFiles/TestSerializationNode.dir/build.make serialization/tests/CMakeFiles/TestSerializationNode.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/depend.internal". Scanning dependencies of target TestSerializeHarmonicBondForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build +[ 73%] Linking CXX executable ../../TestSerializePeriodicTorsionForce +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializePeriodicTorsionForce.dir/link.txt --verbose=1 +[ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeHarmonicBondForce.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -o ../../TestSerializePeriodicTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 73%] Linking CXX shared library ../../libOpenMMRPMD.so +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMRPMD.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMRPMD.so -o ../../libOpenMMRPMD.so CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: -ldl ../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 73%] Built target TestSerializePeriodicTorsionForce +make -f serialization/tests/CMakeFiles/TestSerializationNode.dir/build.make serialization/tests/CMakeFiles/TestSerializationNode.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/DependInfo.cmake --color= +[ 73%] Linking CXX executable ../../TestSerializeCustomAngleForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomAngleForce.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/depend.internal". Scanning dependencies of target TestSerializationNode -[ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeHarmonicBondForce.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -o ../../TestSerializeCustomAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make -f serialization/tests/CMakeFiles/TestSerializationNode.dir/build.make serialization/tests/CMakeFiles/TestSerializationNode.dir/build -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target TestSerializeCustomHbondForce -make -f serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/depend +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializationNode.cpp +[ 73%] Built target OpenMMRPMD +make -f serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/depend.internal". @@ -3826,83 +3865,78 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeGBSAOBCForce.cpp -[ 73%] Linking CXX shared library ../../libOpenMMRPMD.so -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMRPMD.dir/link.txt --verbose=1 -[ 73%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForce.cpp.o -[ 73%] Linking CXX executable ../../TestSerializeGayBerneForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaInPlaneAngleForce.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeGayBerneForce.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMRPMD.so -o ../../libOpenMMRPMD.so CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: -ldl ../../libOpenMM.so.7.5 -ldl -lpthread -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -o ../../TestSerializeGayBerneForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target TestSerializeGayBerneForce +[ 73%] Built target TestSerializeCustomAngleForce make -f serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/depend.internal". Scanning dependencies of target TestSerializeNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target OpenMMRPMD +[ 75%] Linking CXX executable ../../TestSerializeTabulatedFunctions +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeTabulatedFunctions.dir/link.txt --verbose=1 +[ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeNonbondedForce.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -o ../../TestSerializeTabulatedFunctions -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 75%] Linking CXX executable ../../../TestReferenceCustomIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -o ../../../TestReferenceCustomIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 75%] Linking CXX executable ../../TestSerializeRBTorsionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeRBTorsionForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -o ../../TestSerializeRBTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 75%] Built target TestReferenceCustomIntegrator make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/depend.internal". +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target TestSerializeMonteCarloBarostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -[ 73%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeNonbondedForce.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeMonteCarloBarostat.cpp -[ 73%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeNoseHooverIntegrator.cpp -[ 75%] Linking CXX executable ../../TestSerializeTabulatedFunctions -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeTabulatedFunctions.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -o ../../TestSerializeTabulatedFunctions -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -[ 75%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp -[ 75%] Linking CXX executable ../../TestSerializeRBTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeRBTorsionForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -o ../../TestSerializeRBTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -[ 75%] Linking CXX executable ../../TestSerializeAndersenThermostat -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeAndersenThermostat.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -o ../../TestSerializeAndersenThermostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -[ 75%] Built target TestSerializeTabulatedFunctions +[ 75%] Built target TestSerializeRBTorsionForce make -f serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/DependInfo.cmake --color= +[ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeMonteCarloBarostat.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomNonbondedForce.cpp -[ 75%] Built target TestSerializeRBTorsionForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 75%] Built target TestSerializeTabulatedFunctions make -f serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/depend.internal". Scanning dependencies of target TestSerializeCustomTorsionForce -[ 75%] Linking CXX executable ../../TestSerializeSystem -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeSystem.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 75%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeIntegrator.cpp +[ 75%] Linking CXX executable ../../TestSerializeAndersenThermostat +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeAndersenThermostat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -o ../../TestSerializeAndersenThermostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -o ../../TestSerializeSystem -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomTorsionForce.cpp +[ 75%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaInPlaneAngleForce.cpp +[ 75%] Linking CXX executable ../../TestSerializeSystem +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeSystem.dir/link.txt --verbose=1 +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -o ../../TestSerializeSystem -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 75%] Built target TestSerializeAndersenThermostat make -f serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' @@ -3915,9 +3949,6 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomGBForce.cpp -[ 75%] Linking CXX executable ../../TestSerializationNode -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializationNode.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -o ../../TestSerializationNode -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target TestSerializeSystem make -f serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/depend @@ -3933,93 +3964,111 @@ cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeIntegrator.cpp [ 75%] Linking CXX executable ../../TestSerializeCustomCompoundBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCompoundBondForce.dir/link.txt --verbose=1 -[ 75%] Linking CXX executable ../../TestSerializeHarmonicBondForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeHarmonicBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -o ../../TestSerializeCustomCompoundBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -o ../../TestSerializeHarmonicBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 75%] Built target TestSerializationNode +[ 75%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp +[ 75%] Built target TestSerializeCustomCompoundBondForce make -f serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 75%] Built target TestSerializeCustomCompoundBondForce -make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/depend.internal". -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/DependInfo.cmake --color= Scanning dependencies of target TestSerializeCMAPTorsion make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend.internal". -Scanning dependencies of target TestSerializeMonteCarloAnisotropicBarostat make -f serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 75%] Built target TestSerializeHarmonicBondForce -make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/depend -[ 75%] Linking CXX executable ../../TestSerializeMonteCarloBarostat [ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloBarostat.dir/link.txt --verbose=1 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCMAPTorsion.cpp +[ 75%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeLangevinIntegrator.cpp +[ 75%] Linking CXX executable ../../TestSerializationNode +[ 75%] Linking CXX executable ../../TestSerializeMonteCarloBarostat +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializationNode.dir/link.txt --verbose=1 +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloBarostat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -o ../../TestSerializationNode -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -o ../../TestSerializeMonteCarloBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 75%] Linking CXX executable ../../TestSerializeHarmonicBondForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeHarmonicBondForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -o ../../TestSerializeHarmonicBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 75%] Linking CXX executable ../../TestSerializeGBSAOBCForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeGBSAOBCForce.dir/link.txt --verbose=1 +[ 75%] Built target TestSerializationNode +make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -o ../../TestSerializeGBSAOBCForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 75%] Built target TestSerializeMonteCarloBarostat +make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/depend +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/DependInfo.cmake --color= -[ 75%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeMonteCarloAnisotropicBarostat.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -o ../../TestSerializeMonteCarloBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/depend.internal". Scanning dependencies of target TestSerializeMonteCarloMembraneBarostat make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 75%] Linking CXX executable ../../TestSerializeGBSAOBCForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeGBSAOBCForce.dir/link.txt --verbose=1 [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeMonteCarloMembraneBarostat.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -o ../../TestSerializeGBSAOBCForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -[ 77%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaMultipoleForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 77%] Built target TestSerializeMonteCarloBarostat +[ 77%] Built target TestSerializeHarmonicBondForce make -f serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/DependInfo.cmake --color= -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/depend.internal". -Scanning dependencies of target TestSerializeCustomExternalForce -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomExternalForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target TestSerializeGBSAOBCForce make -f serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/DependInfo.cmake --color= -[ 77%] Linking CXX executable ../../../TestReferenceDispersionPME -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDispersionPME.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/depend.internal". Scanning dependencies of target TestSerializeNoseHooverIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -o ../../../TestReferenceDispersionPME -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeNoseHooverIntegrator.cpp +Scanning dependencies of target TestSerializeMonteCarloAnisotropicBarostat +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeMonteCarloAnisotropicBarostat.cpp +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/depend.internal". +Scanning dependencies of target TestSerializeCustomExternalForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build +[ 77%] Linking CXX executable ../../../TestReferenceEwald +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceEwald.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -o ../../../TestReferenceEwald -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 77%] Built target TestReferenceEwald +[ 77%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuCustomManyParticleForce.cpp +[ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeCustomExternalForce.cpp +[ 77%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeNoseHooverIntegrator.cpp +[ 77%] Linking CXX executable ../../TestSerializeCustomTorsionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomTorsionForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -o ../../TestSerializeCustomTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread [ 77%] Linking CXX executable ../../TestSerializeCustomCentroidBondForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCentroidBondForce.dir/link.txt --verbose=1 -[ 77%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o -o ../../TestSerializeCustomCentroidBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeSCFIntegrator.cpp +[ 77%] Linking CXX executable ../../TestSerializeNonbondedForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeNonbondedForce.dir/link.txt --verbose=1 +[ 77%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaMultipoleForce.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -o ../../TestSerializeNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 77%] Built target TestReferenceDispersionPME +[ 77%] Built target TestSerializeCustomTorsionForce make -f serialization/tests/CMakeFiles/TestSerializeState.dir/build.make serialization/tests/CMakeFiles/TestSerializeState.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeState.dir/DependInfo.cmake --color= @@ -4029,11 +4078,16 @@ make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeState.dir/build.make serialization/tests/CMakeFiles/TestSerializeState.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeState.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target TestSerializeCustomCentroidBondForce make -f serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/depend +[ 77%] Built target TestSerializeNonbondedForce +[ 77%] Linking CXX executable ../../TestSerializeCMAPTorsion +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCMAPTorsion.dir/link.txt --verbose=1 +[ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeState.cpp +[ 77%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuCustomNonbondedForce.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/depend.internal". @@ -4041,27 +4095,20 @@ Scanning dependencies of target TestSerializeHarmonicAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -o ../../TestSerializeCMAPTorsion -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeHarmonicAngleForce.cpp +[ 77%] Linking CXX executable ../../TestSerializeMonteCarloMembraneBarostat +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/link.txt --verbose=1 [ 77%] Linking CXX executable ../../TestSerializeMonteCarloAnisotropicBarostat cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -o ../../TestSerializeMonteCarloAnisotropicBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -[ 77%] Linking CXX executable ../../TestSerializeCustomTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomTorsionForce.dir/link.txt --verbose=1 -[ 77%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeForceProxy.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -o ../../TestSerializeCustomTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -[ 77%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaMultipoleForceImpl.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 77%] Linking CXX executable ../../TestSerializeMonteCarloMembraneBarostat -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/link.txt --verbose=1 [ 77%] Built target TestSerializeMonteCarloAnisotropicBarostat make -f serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -o ../../TestSerializeMonteCarloMembraneBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/depend.internal". Scanning dependencies of target TestSerializeRMSDForce @@ -4070,43 +4117,41 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -c /build/openmm-7.5.0+dfsg/serialization/tests/TestSerializeRMSDForce.cpp -[ 77%] Linking CXX executable ../../TestSerializeCustomGBForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomGBForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -o ../../TestSerializeCustomGBForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -[ 79%] Linking CXX executable ../../TestSerializeCustomNonbondedForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomNonbondedForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -o ../../TestSerializeCustomNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -o ../../TestSerializeMonteCarloMembraneBarostat -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target TestSerializeMonteCarloMembraneBarostat +[ 77%] Built target TestSerializeCMAPTorsion make -f tests/CMakeFiles/TestEnforcePeriodicBox.dir/build.make tests/CMakeFiles/TestEnforcePeriodicBox.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestEnforcePeriodicBox.dir/DependInfo.cmake --color= -[ 79%] Built target TestSerializeCustomTorsionForce -make -f tests/CMakeFiles/TestFindExclusions.dir/build.make tests/CMakeFiles/TestFindExclusions.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestEnforcePeriodicBox.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestEnforcePeriodicBox.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestEnforcePeriodicBox.dir/depend.internal". Scanning dependencies of target TestEnforcePeriodicBox make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestEnforcePeriodicBox.dir/build.make tests/CMakeFiles/TestEnforcePeriodicBox.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 77%] Building CXX object tests/CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestEnforcePeriodicBox.cpp +[ 79%] Linking CXX executable ../../TestSerializeCustomNonbondedForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomNonbondedForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -o ../../TestSerializeCustomNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 79%] Built target TestSerializeCustomNonbondedForce +make -f tests/CMakeFiles/TestFindExclusions.dir/build.make tests/CMakeFiles/TestFindExclusions.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/depend.internal". Scanning dependencies of target TestFindExclusions -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestFindExclusions.dir/build.make tests/CMakeFiles/TestFindExclusions.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 79%] Building CXX object tests/CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestEnforcePeriodicBox.cpp [ 79%] Building CXX object tests/CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestFindExclusions.cpp +[ 79%] Linking CXX executable ../../TestSerializeCustomGBForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomGBForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -o ../../TestSerializeCustomGBForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 79%] Linking CXX executable ../../TestSerializeCMAPTorsion -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCMAPTorsion.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -o ../../TestSerializeCMAPTorsion -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -[ 79%] Built target TestSerializeCustomNonbondedForce +[ 79%] Built target TestSerializeCustomGBForce make -f tests/CMakeFiles/TestFindMolecules.dir/build.make tests/CMakeFiles/TestFindMolecules.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindMolecules.dir/DependInfo.cmake --color= @@ -4114,112 +4159,121 @@ Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindMolecules.dir/depend.internal". Scanning dependencies of target TestFindMolecules make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestFindMolecules.dir/build.make tests/CMakeFiles/TestFindMolecules.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target TestSerializeCustomGBForce -make -f tests/CMakeFiles/TestParser.dir/build.make tests/CMakeFiles/TestParser.dir/depend [ 79%] Building CXX object tests/CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestFindMolecules.cpp +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 79%] Built target TestSerializeMonteCarloMembraneBarostat +make -f tests/CMakeFiles/TestParser.dir/build.make tests/CMakeFiles/TestParser.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestParser.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestParser.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestParser.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestParser.dir/depend.internal". -[ 79%] Linking CXX executable ../../TestSerializeNonbondedForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeNonbondedForce.dir/link.txt --verbose=1 Scanning dependencies of target TestParser make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestParser.dir/build.make tests/CMakeFiles/TestParser.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target TestSerializeCMAPTorsion -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -o ../../TestSerializeNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 79%] Building CXX object tests/CMakeFiles/TestParser.dir/TestParser.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestParser.dir/TestParser.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestParser.cpp +[ 79%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/src/DrudeSCFIntegrator.cpp +[ 79%] Linking CXX executable ../../TestSerializeRMSDForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeRMSDForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -o ../../TestSerializeRMSDForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 79%] Built target TestSerializeRMSDForce make -f tests/CMakeFiles/TestSplineFitter.dir/build.make tests/CMakeFiles/TestSplineFitter.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSplineFitter.dir/DependInfo.cmake --color= -[ 79%] Linking CXX executable ../../TestSerializeCustomExternalForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomExternalForce.dir/link.txt --verbose=1 -[ 79%] Building CXX object tests/CMakeFiles/TestParser.dir/TestParser.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestParser.dir/TestParser.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestParser.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSplineFitter.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSplineFitter.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSplineFitter.dir/depend.internal". -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -o ../../TestSerializeCustomExternalForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread Scanning dependencies of target TestSplineFitter make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestSplineFitter.dir/build.make tests/CMakeFiles/TestSplineFitter.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object tests/CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestSplineFitter.cpp +[ 79%] Linking CXX executable ../../TestSerializeCustomExternalForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomExternalForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -o ../../TestSerializeCustomExternalForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 79%] Linking CXX executable ../TestEnforcePeriodicBox +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEnforcePeriodicBox.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -o ../TestEnforcePeriodicBox -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread +[ 79%] Linking CXX executable ../../TestSerializeNoseHooverIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeNoseHooverIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -o ../../TestSerializeNoseHooverIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target TestSerializeCustomExternalForce make -f tests/CMakeFiles/TestVectorizeAvx.dir/build.make tests/CMakeFiles/TestVectorizeAvx.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx.dir/DependInfo.cmake --color= -[ 79%] Linking CXX executable ../../TestSerializeHarmonicAngleForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeHarmonicAngleForce.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx.dir/depend.internal". Scanning dependencies of target TestVectorizeAvx make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorizeAvx.dir/build.make tests/CMakeFiles/TestVectorizeAvx.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -o ../../TestSerializeHarmonicAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object tests/CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -mavx -std=gnu++11 -o CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestVectorizeAvx.cpp -[ 79%] Built target TestSerializeNonbondedForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 79%] Built target TestEnforcePeriodicBox make -f tests/CMakeFiles/TestSystem.dir/build.make tests/CMakeFiles/TestSystem.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSystem.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSystem.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSystem.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSystem.dir/depend.internal". +[ 79%] Built target TestSerializeNoseHooverIntegrator Scanning dependencies of target TestSystem make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestSystem.dir/build.make tests/CMakeFiles/TestSystem.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 79%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeForceProxy.cpp [ 79%] Building CXX object tests/CMakeFiles/TestSystem.dir/TestSystem.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestSystem.dir/TestSystem.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestSystem.cpp +[ 81%] Linking CXX executable ../TestFindMolecules +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFindMolecules.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -o ../TestFindMolecules -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread +[ 81%] Linking CXX executable ../TestFindExclusions +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFindExclusions.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -o ../TestFindExclusions -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread +[ 81%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeLangevinIntegratorProxy.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target TestSerializeHarmonicAngleForce +[ 81%] Built target TestFindMolecules make -f tests/CMakeFiles/TestVectorExpression.dir/build.make tests/CMakeFiles/TestVectorExpression.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorExpression.dir/DependInfo.cmake --color= -[ 79%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeLangevinIntegratorProxy.cpp -[ 79%] Linking CXX executable ../../TestSerializeNoseHooverIntegrator -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeNoseHooverIntegrator.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorExpression.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorExpression.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorExpression.dir/depend.internal". Scanning dependencies of target TestVectorExpression make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorExpression.dir/build.make tests/CMakeFiles/TestVectorExpression.dir/build -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -o ../../TestSerializeNoseHooverIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 79%] Building CXX object tests/CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestVectorExpression.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 79%] Built target TestSerializeNoseHooverIntegrator +[ 81%] Built target TestFindExclusions make -f tests/CMakeFiles/TestVectorize.dir/build.make tests/CMakeFiles/TestVectorize.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorize.dir/DependInfo.cmake --color= -[ 81%] Linking CXX executable ../TestFindMolecules +[ 81%] Building CXX object tests/CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestVectorExpression.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorize.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorize.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorize.dir/depend.internal". Scanning dependencies of target TestVectorize -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFindMolecules.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorize.dir/build.make tests/CMakeFiles/TestVectorize.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -o ../TestFindMolecules -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread [ 81%] Building CXX object tests/CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -msse4.1 -std=gnu++11 -o CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestVectorize.cpp -[ 81%] Linking CXX executable ../TestEnforcePeriodicBox -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEnforcePeriodicBox.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -o ../TestEnforcePeriodicBox -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread +[ 81%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaMultipoleForceImpl.cpp +[ 81%] Linking CXX executable ../../TestSerializeHarmonicAngleForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeHarmonicAngleForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -o ../../TestSerializeHarmonicAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 81%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp -[ 81%] Built target TestFindMolecules +[ 81%] Built target TestSerializeHarmonicAngleForce make -f tests/CMakeFiles/TestVectorizeAvx2.dir/build.make tests/CMakeFiles/TestVectorizeAvx2.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx2.dir/DependInfo.cmake --color= @@ -4230,12 +4284,16 @@ make -f tests/CMakeFiles/TestVectorizeAvx2.dir/build.make tests/CMakeFiles/TestVectorizeAvx2.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object tests/CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -[ 81%] Linking CXX executable ../../TestSerializeRMSDForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeRMSDForce.dir/link.txt --verbose=1 cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -mfma -mavx2 -std=gnu++11 -o CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -c /build/openmm-7.5.0+dfsg/tests/TestVectorizeAvx2.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -o ../../TestSerializeRMSDForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 81%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuGBSAOBCForce.cpp +[ 81%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeNoseHooverIntegratorProxy.cpp +[ 81%] Linking CXX executable ../../TestSerializeIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -o ../../TestSerializeIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target TestEnforcePeriodicBox +[ 81%] Built target TestSerializeIntegrator make -f examples/CMakeFiles/HelloEthane.dir/build.make examples/CMakeFiles/HelloEthane.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloEthane.dir/DependInfo.cmake --color= @@ -4247,10 +4305,11 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object examples/CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -c /build/openmm-7.5.0+dfsg/examples/HelloEthane.cpp +[ 81%] Linking CXX executable ../TestVectorExpression +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorExpression.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -o ../TestVectorExpression -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target TestSerializeRMSDForce -[ 81%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeNoseHooverIntegratorProxy.cpp +[ 81%] Built target TestVectorExpression make -f examples/CMakeFiles/HelloWaterBox.dir/build.make examples/CMakeFiles/HelloWaterBox.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloWaterBox.dir/DependInfo.cmake --color= @@ -4262,32 +4321,27 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object examples/CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -c /build/openmm-7.5.0+dfsg/examples/HelloWaterBox.cpp -[ 81%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp -[ 81%] Linking CXX executable ../TestVectorExpression -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorExpression.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -o ../TestVectorExpression -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread [ 81%] Linking CXX executable ../../TestSerializeState cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeState.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -o ../../TestSerializeState -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 81%] Linking CXX executable ../TestSystem +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSystem.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSystem.dir/TestSystem.cpp.o -o ../TestSystem -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target TestVectorExpression +[ 81%] Built target TestSerializeState make -f examples/CMakeFiles/HelloSodiumChloride.dir/build.make examples/CMakeFiles/HelloSodiumChloride.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloSodiumChloride.dir/DependInfo.cmake --color= -[ 81%] Linking CXX executable ../TestFindExclusions -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFindExclusions.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloSodiumChloride.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloSodiumChloride.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloSodiumChloride.dir/depend.internal". Scanning dependencies of target HelloSodiumChloride make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloSodiumChloride.dir/build.make examples/CMakeFiles/HelloSodiumChloride.dir/build -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -o ../TestFindExclusions -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object examples/CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o -c /build/openmm-7.5.0+dfsg/examples/HelloSodiumChloride.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target TestSerializeState +[ 81%] Built target TestSystem make -f examples/CMakeFiles/HelloArgon.dir/build.make examples/CMakeFiles/HelloArgon.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloArgon.dir/DependInfo.cmake --color= @@ -4299,197 +4353,187 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object examples/CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -c /build/openmm-7.5.0+dfsg/examples/HelloArgon.cpp +[ 83%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeSerializationProxyRegistration.cpp +[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp +[ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuGayBerneForce.cpp +[ 83%] Linking CXX executable ../TestSplineFitter +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSplineFitter.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -o ../TestSplineFitter -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target TestFindExclusions +[ 83%] Built target TestSplineFitter +[ 83%] Linking CXX executable ../TestVectorizeAvx2 +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorizeAvx2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -o ../TestVectorizeAvx2 -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread +[ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuKernelFactory.cpp +[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 83%] Linking CXX executable ../HelloEthane +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloEthane.dir/link.txt --verbose=1 +[ 83%] Built target TestVectorizeAvx2 make -f plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build.make plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/DependInfo.cmake --color= -[ 81%] Linking CXX executable ../TestSystem -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSystem.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -o ../HelloEthane -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/depend.internal". Scanning dependencies of target OpenMMRPMDReference -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSystem.dir/TestSystem.cpp.o -o ../TestSystem -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build.make plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 81%] Building CXX object plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o +[ 83%] Linking CXX shared library ../../libOpenMMDrude.so +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMDrude.dir/link.txt --verbose=1 +[ 83%] Building CXX object plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMDReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src/ReferenceRpmdKernelFactory.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target TestSystem -[ 83%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrude_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/serialization/src/DrudeSerializationProxyRegistration.cpp -[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaPiTorsionForce.cpp -[ 83%] Linking CXX executable ../HelloEthane -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloEthane.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -o ../HelloEthane -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMDrude.so -o ../../libOpenMMDrude.so CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: -ldl ../../libOpenMM.so.7.5 -ldl -lpthread [ 83%] Linking CXX executable ../HelloWaterBox cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloWaterBox.dir/link.txt --verbose=1 -[ 83%] Building CXX object plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMDReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src/ReferenceRpmdKernels.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -o ../HelloWaterBox -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 83%] Built target HelloEthane -[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaStretchBendForce.cpp -[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForceImpl.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaPiTorsionForceImpl.cpp [ 83%] Linking CXX executable ../HelloSodiumChloride cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloSodiumChloride.dir/link.txt --verbose=1 -[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForceImpl.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaStretchBendForceImpl.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -o ../HelloWaterBox -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o -o ../HelloSodiumChloride -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread -[ 83%] Linking CXX shared library ../../libOpenMMDrude.so -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMDrude.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 83%] Linking CXX executable ../HelloArgon -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloArgon.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMDrude.so -o ../../libOpenMMDrude.so CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: -ldl ../../libOpenMM.so.7.5 -ldl -lpthread -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -o ../HelloArgon -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread -[ 83%] Built target HelloWaterBox -[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 83%] Linking CXX executable ../TestVectorizeAvx -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorizeAvx.dir/link.txt --verbose=1 [ 83%] Built target HelloSodiumChloride -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -o ../TestVectorizeAvx -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread -[ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target HelloArgon -[ 85%] Linking CXX executable ../../TestSerializeIntegrator -[ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeIntegrator.dir/link.txt --verbose=1 -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaVdwForce.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -o ../../TestSerializeIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../libOpenMM.so.7.5 -ldl -lpthread +[ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o +[ 83%] Built target HelloWaterBox +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuKernels.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target OpenMMDrude +[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaPiTorsionForce.cpp +[ 83%] Built target HelloEthane +[ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuLangevinDynamics.cpp +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target OpenMMDrude make -f plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build.make plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 85%] Linking CXX executable ../TestVectorizeAvx2 -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorizeAvx2.dir/link.txt --verbose=1 Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/depend.internal". -[ 85%] Built target TestVectorizeAvx Scanning dependencies of target OpenMMDrudeReference make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -o ../TestVectorizeAvx2 -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread make -f plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build.make plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 83%] Building CXX object plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrudeReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src/ReferenceDrudeKernelFactory.cpp +[ 83%] Linking CXX executable ../HelloArgon +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloArgon.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -o ../HelloArgon -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread +[ 83%] Building CXX object plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMRPMDReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src/ReferenceRpmdKernels.cpp +[ 83%] Linking CXX executable ../TestVectorizeAvx +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorizeAvx.dir/link.txt --verbose=1 +[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForceImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaPiTorsionForceImpl.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -o ../TestVectorizeAvx -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target HelloArgon +[ 83%] Building CXX object plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrudeReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src/ReferenceDrudeKernels.cpp +[ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuLangevinMiddleDynamics.cpp +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target TestVectorizeAvx +[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaStretchBendForce.cpp +[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForceImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaStretchBendForceImpl.cpp +[ 83%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForce.cpp +[ 83%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNeighborList.cpp +[ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp +[ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaVdwForce.cpp +[ 85%] Linking CXX shared library ../../../../libOpenMMRPMDReference.so +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMRPMDReference.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMRPMDReference.so -o ../../../../libOpenMMRPMDReference.so CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../../libOpenMMRPMD.so ../../../../libOpenMM.so.7.5 -lpthread -ldl [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaVdwForceImpl.cpp -[ 85%] Building CXX object plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrudeReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src/ReferenceDrudeKernelFactory.cpp +[ 85%] Linking CXX executable ../TestVectorize +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorize.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -o ../TestVectorize -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target OpenMMRPMDReference +make -f plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build.make plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend.internal". +Scanning dependencies of target TestReferenceRpmd +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build.make plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 85%] Building CXX object plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/tests/TestReferenceRpmd.cpp +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target TestVectorize [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForce.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target TestSerializeIntegrator +[ 85%] Linking CXX shared library ../../../../libOpenMMDrudeReference.so +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMDrudeReference.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMDrudeReference.so -o ../../../../libOpenMMDrudeReference.so CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../../libOpenMMDrude.so ../../../../libOpenMM.so.7.5 -lpthread -ldl [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp -[ 85%] Linking CXX executable ../TestSplineFitter -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSplineFitter.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -o ../TestSplineFitter -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread -[ 85%] Built target TestVectorizeAvx2 +[ 85%] Built target OpenMMDrudeReference [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o -[ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/HippoNonbondedForce.cpp +[ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/src/HippoNonbondedForceImpl.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaAngleForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaAngleForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaAngleForceProxy.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target TestSplineFitter [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaBondForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaBondForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaBondForceProxy.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp -[ 85%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuCustomManyParticleForce.cpp -[ 85%] Building CXX object plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMDrudeReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src/ReferenceDrudeKernels.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaInPlaneAngleForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaInPlaneAngleForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaInPlaneAngleForceProxy.cpp -[ 85%] Linking CXX shared library ../../../../libOpenMMRPMDReference.so -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMRPMDReference.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMRPMDReference.so -o ../../../../libOpenMMRPMDReference.so CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../../libOpenMMRPMD.so ../../../../libOpenMM.so.7.5 -lpthread -ldl [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaMultipoleForceProxy.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaOutOfPlaneBendForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaOutOfPlaneBendForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaOutOfPlaneBendForceProxy.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaPiTorsionForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaPiTorsionForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaPiTorsionForceProxy.cpp +[ 85%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForce.cpp [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaSerializationProxyRegistration.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaStretchBendForceProxy.cpp.o -[ 85%] Built target OpenMMRPMDReference cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaStretchBendForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaStretchBendForceProxy.cpp -make -f plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build.make plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/DependInfo.cmake --color= [ 85%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend.internal". cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaTorsionTorsionForceProxy.cpp -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend.internal". -Scanning dependencies of target TestReferenceRpmd -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build.make plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 85%] Building CXX object plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/src -I/build/openmm-7.5.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/rpmd/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/rpmd/platforms/reference/tests/TestReferenceRpmd.cpp [ 87%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaVdwForceProxy.cpp -[ 87%] Linking CXX executable ../../../TestReferenceEwald -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceEwald.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -o ../../../TestReferenceEwald -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.5 -ldl -lpthread [ 87%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/AmoebaWcaDispersionForceProxy.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target TestReferenceEwald +[ 87%] Linking CXX executable ../../../../../TestReferenceRpmd +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRpmd.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -o ../../../../../TestReferenceRpmd -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMRPMDReference.so ../../../../../libOpenMMRPMD.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread [ 87%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoeba_EXPORTS -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/src/HippoNonbondedForceProxy.cpp -[ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuCustomNonbondedForce.cpp -[ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuGBSAOBCForce.cpp -[ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuGayBerneForce.cpp -[ 87%] Linking CXX executable ../TestVectorize -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorize.dir/link.txt --verbose=1 -[ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuKernelFactory.cpp -[ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuKernels.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -o ../TestVectorize -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread -[ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuLangevinDynamics.cpp -[ 87%] Linking CXX shared library ../../../../libOpenMMDrudeReference.so -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMDrudeReference.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMDrudeReference.so -o ../../../../libOpenMMDrudeReference.so CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../../libOpenMMDrude.so ../../../../libOpenMM.so.7.5 -lpthread -ldl -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target TestVectorize -[ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuLangevinMiddleDynamics.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target OpenMMDrudeReference make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/depend.internal". +[ 87%] Built target TestReferenceRpmd +make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/depend Scanning dependencies of target TestReferenceDrudeNoseHoover make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 89%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -I/build/openmm-7.5.0+dfsg/platforms/reference/tests -I/build/openmm-7.5.0+dfsg/plugins/drude/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeNoseHoover.cpp -make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/DependInfo.cmake --color= +[ 89%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -I/build/openmm-7.5.0+dfsg/platforms/reference/tests -I/build/openmm-7.5.0+dfsg/plugins/drude/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeNoseHoover.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/depend.internal". Scanning dependencies of target TestReferenceDrudeLangevinIntegrator @@ -4498,13 +4542,9 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -I/build/openmm-7.5.0+dfsg/platforms/reference/tests -I/build/openmm-7.5.0+dfsg/plugins/drude/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeLangevinIntegrator.cpp -[ 89%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNeighborList.cpp make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/depend -[ 89%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/DependInfo.cmake --color= -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForce.cpp Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/depend.internal". Scanning dependencies of target TestReferenceDrudeSCFIntegrator @@ -4513,6 +4553,8 @@ make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -I/build/openmm-7.5.0+dfsg/platforms/reference/tests -I/build/openmm-7.5.0+dfsg/plugins/drude/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeSCFIntegrator.cpp +[ 89%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -mavx -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceAvx.cpp make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/DependInfo.cmake --color= @@ -4521,19 +4563,39 @@ Scanning dependencies of target TestReferenceDrudeForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/build -[ 89%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -mavx -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceAvx.cpp [ 89%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/drude/src -I/build/openmm-7.5.0+dfsg/plugins/drude/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/drude/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -I/build/openmm-7.5.0+dfsg/openmmapi/include/openmm -I/build/openmm-7.5.0+dfsg/platforms/reference/tests -I/build/openmm-7.5.0+dfsg/plugins/drude/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeForce.cpp [ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -mavx2 -mfma -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceAvx2.cpp +[ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceFvec.cpp +[ 91%] Linking CXX executable ../../../../../TestReferenceDrudeLangevinIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o -o ../../../../../TestReferenceDrudeLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +[ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceVec4.cpp +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 91%] Built target TestReferenceDrudeLangevinIntegrator +[ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuPlatform.cpp +[ 91%] Linking CXX executable ../../../../../TestReferenceDrudeSCFIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -o ../../../../../TestReferenceDrudeSCFIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +[ 91%] Linking CXX executable ../../../../../TestReferenceDrudeNoseHoover +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeNoseHoover.dir/link.txt --verbose=1 [ 91%] Linking CXX shared library ../../libOpenMMAmoeba.so +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -o ../../../../../TestReferenceDrudeNoseHoover -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMAmoeba.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMAmoeba.so -o ../../libOpenMMAmoeba.so CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaAngleForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaBondForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaInPlaneAngleForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaOutOfPlaneBendForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaPiTorsionForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaStretchBendForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaAngleForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaBondForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaInPlaneAngleForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaOutOfPlaneBendForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaPiTorsionForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaStretchBendForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: -ldl ../../libOpenMM.so.7.5 -ldl -lpthread -[ 91%] Linking CXX executable ../../../../../TestReferenceRpmd -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRpmd.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -o ../../../../../TestReferenceRpmd -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMRPMDReference.so ../../../../../libOpenMMRPMD.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 91%] Built target TestReferenceDrudeSCFIntegrator +[ 91%] Built target TestReferenceDrudeNoseHoover +[ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuRandom.cpp +[ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuSETTLE.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target OpenMMAmoeba make -f plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build.make plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/depend @@ -4541,60 +4603,38 @@ cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/depend.internal". -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target OpenMMAmoebaReference make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build.make plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target TestReferenceRpmd -[ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernelFactory.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o +[ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernels.cpp -[ 91%] Linking CXX executable ../../../../../TestReferenceDrudeNoseHoover -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeNoseHoover.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -o ../../../../../TestReferenceDrudeNoseHoover -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -[ 91%] Linking CXX executable ../../../../../TestReferenceDrudeSCFIntegrator -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -o ../../../../../TestReferenceDrudeSCFIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target TestReferenceDrudeNoseHoover -[ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceFvec.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target TestReferenceDrudeSCFIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernelFactory.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceAngleForce.cpp -[ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceBondForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.cpp -[ 91%] Linking CXX executable ../../../../../TestReferenceDrudeLangevinIntegrator -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o -o ../../../../../TestReferenceDrudeLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -[ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuNonbondedForceVec4.cpp [ 91%] Linking CXX executable ../../../../../TestReferenceDrudeForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o -o ../../../../../TestReferenceDrudeForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +[ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceBondForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceBondForce.cpp +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 91%] Built target TestReferenceDrudeForce [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.cpp -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target TestReferenceDrudeLangevinIntegrator [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp -[ 91%] Built target TestReferenceDrudeForce -[ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o -[ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuPlatform.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o -[ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuRandom.cpp +[ 91%] Linking CXX executable ../TestParser +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestParser.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestParser.dir/TestParser.cpp.o -o ../TestParser -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread +[ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp -[ 91%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMCPU_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -o CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/src/CpuSETTLE.cpp +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 91%] Built target TestParser [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferencePiTorsionForce.cpp.o @@ -4607,397 +4647,186 @@ cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceVdwForce.cpp [ 93%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp -[ 93%] Linking CXX executable ../TestParser -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestParser.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestParser.dir/TestParser.cpp.o -o ../TestParser -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target TestParser +[ 93%] Linking CXX shared library ../../../libOpenMMCPU.so +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMCPU.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMCPU.so -o ../../../libOpenMMCPU.so CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../libOpenMM.so.7.5 -lpthread -ldl -lpthread [ 93%] Linking CXX shared library ../../../../libOpenMMAmoebaReference.so cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMAmoebaReference.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMAmoebaReference.so -o ../../../../libOpenMMAmoebaReference.so CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceAngleForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceBondForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceInPlaneAngleForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceOutOfPlaneBendForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferencePiTorsionForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceStretchBendForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../../libOpenMMAmoeba.so ../../../../libOpenMM.so.7.5 -lpthread -ldl make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target OpenMMAmoebaReference -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/depend -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/depend -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/depend -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/DependInfo.cmake --color= -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build.make 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/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/DependInfo.cmake --color= -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/depend -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/DependInfo.cmake --color= -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/DependInfo.cmake --color= -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/DependInfo.cmake --color= -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/depend -make[4]: 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/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/DependInfo.cmake --color= -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender 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"/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend.internal". -Scanning dependencies of target TestReferenceAmoebaBondForce -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/DependInfo.cmake --color= -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend -Scanning dependencies of target TestReferenceAmoebaExtrapolatedPolarization -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/DependInfo.cmake" is newer than depender 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Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/DependInfo.cmake --color= -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/build -Scanning dependencies of target TestReferenceHippoNonbondedForce -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/depend.internal". -Scanning dependencies of target TestReferenceAmoebaAngleForce -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/depend.internal". -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/build -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/depend.internal". -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend.internal". -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target TestReferenceAmoebaOutOfPlaneBendForce -Scanning dependencies of target TestReferenceAmoebaStretchBendForce -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend.internal". -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/build -Scanning dependencies of target TestReferenceAmoebaInPlaneAngleForce -Scanning dependencies of target TestReferenceWcaDispersionForce -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend.internal". -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/build -Scanning dependencies of target TestReferenceAmoebaTorsionTorsionForce -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 93%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/TestReferenceAmoebaAngleForce.cpp.o -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaAngleForce.dir/TestReferenceAmoebaAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaAngleForce.cpp -Scanning dependencies of target TestReferenceAmoebaVdwForce -[ 93%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaExtrapolatedPolarization.cpp -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 93%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -[ 93%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/TestReferenceAmoebaBondForce.cpp.o -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 93%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaBondForce.dir/TestReferenceAmoebaBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaBondForce.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaMultipoleForce.cpp -[ 93%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/TestReferenceAmoebaInPlaneAngleForce.cpp.o -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build -make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/TestReferenceAmoebaPiTorsionForce.cpp.o -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/TestReferenceAmoebaOutOfPlaneBendForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/TestReferenceAmoebaPiTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaPiTorsionForce.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/TestReferenceAmoebaInPlaneAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaInPlaneAngleForce.cpp -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/TestReferenceAmoebaOutOfPlaneBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaOutOfPlaneBendForce.cpp -[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceWcaDispersionForce.cpp -[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaVdwForce.cpp -[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/TestReferenceAmoebaStretchBendForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/TestReferenceAmoebaStretchBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaStretchBendForce.cpp -[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceHippoNonbondedForce.cpp -[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaTorsionTorsionForce.cpp -[ 95%] Linking CXX executable ../../../../../TestReferenceAmoebaInPlaneAngleForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/TestReferenceAmoebaInPlaneAngleForce.cpp.o -o ../../../../../TestReferenceAmoebaInPlaneAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -[ 95%] Linking CXX executable ../../../../../TestReferenceWcaDispersionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceWcaDispersionForce.dir/link.txt --verbose=1 -[ 95%] Linking CXX executable ../../../../../TestReferenceAmoebaBondForce -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -o ../../../../../TestReferenceWcaDispersionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaBondForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaBondForce.dir/TestReferenceAmoebaBondForce.cpp.o -o ../../../../../TestReferenceAmoebaBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target TestReferenceAmoebaInPlaneAngleForce -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Linking CXX executable ../../../../../TestReferenceAmoebaAngleForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaAngleForce.dir/link.txt --verbose=1 -[ 95%] Built target TestReferenceWcaDispersionForce -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaAngleForce.dir/TestReferenceAmoebaAngleForce.cpp.o -o ../../../../../TestReferenceAmoebaAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -[ 95%] Linking CXX executable ../../../../../TestReferenceAmoebaPiTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/link.txt --verbose=1 -[ 95%] Built target TestReferenceAmoebaBondForce -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/TestReferenceAmoebaPiTorsionForce.cpp.o -o ../../../../../TestReferenceAmoebaPiTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target TestReferenceAmoebaAngleForce -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target TestReferenceAmoebaPiTorsionForce -[ 95%] Linking CXX executable ../../../../../TestReferenceAmoebaGeneralizedKirkwoodForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/link.txt --verbose=1 -[ 95%] Linking CXX executable ../../../../../TestReferenceAmoebaStretchBendForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -o ../../../../../TestReferenceAmoebaGeneralizedKirkwoodForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/TestReferenceAmoebaStretchBendForce.cpp.o -o ../../../../../TestReferenceAmoebaStretchBendForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -[ 95%] Linking CXX executable ../../../../../TestReferenceAmoebaTorsionTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -o ../../../../../TestReferenceAmoebaTorsionTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target TestReferenceAmoebaGeneralizedKirkwoodForce -[ 95%] Built target TestReferenceAmoebaStretchBendForce -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target TestReferenceAmoebaTorsionTorsionForce -[ 95%] Linking CXX executable ../../../../../TestReferenceAmoebaOutOfPlaneBendForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/TestReferenceAmoebaOutOfPlaneBendForce.cpp.o -o ../../../../../TestReferenceAmoebaOutOfPlaneBendForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target TestReferenceAmoebaOutOfPlaneBendForce -[ 95%] Linking CXX executable ../../../../../TestReferenceAmoebaExtrapolatedPolarization -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -o ../../../../../TestReferenceAmoebaExtrapolatedPolarization -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target TestReferenceAmoebaExtrapolatedPolarization -[ 95%] Linking CXX shared library ../../../libOpenMMCPU.so -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMCPU.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMCPU.so -o ../../../libOpenMMCPU.so CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu: ../../../libOpenMM.so.7.5 -lpthread -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target OpenMMCPU +[ 93%] Built target OpenMMCPU make -f platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/depend -make -f platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/DependInfo.cmake --color= -make -f platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend +make -f platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/DependInfo.cmake --color= +make -f platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/depend +make -f platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/DependInfo.cmake --color= -make -f platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/DependInfo.cmake --color= +Scanning dependencies of target TestCpuSettle +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/DependInfo.cmake --color= -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/depend.internal". +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/depend +make -f platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend.internal". -make -f platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend -Scanning dependencies of target TestCpuNonbondedForce -Scanning dependencies of target TestCpuCheckpoints -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/DependInfo.cmake --color= -Scanning dependencies of target TestCpuSettle -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build +make -f platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend.internal". -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target TestCpuPeriodicTorsionForce -make -f platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build -make -f platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/DependInfo.cmake --color= make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/depend +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend.internal". +Scanning dependencies of target TestCpuNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend.internal". Scanning dependencies of target TestCpuCompoundIntegrator +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend.internal". -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/DependInfo.cmake --color= -make -f platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/depend.internal". -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -make -f platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuSettle.cpp Scanning dependencies of target TestCpuCustomGBForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCheckpoints.cpp -make -f platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o +Scanning dependencies of target TestCpuEwald +Scanning dependencies of target TestCpuPeriodicTorsionForce +make -f platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target TestCpuCheckpoints make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/DependInfo.cmake --color= +make -f platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target TestCpuGayBerneForce -Scanning dependencies of target TestCpuEwald -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuSettle.cpp -Scanning dependencies of target TestCpuHarmonicAngleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend.internal". make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/DependInfo.cmake --color= -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/depend.internal". +make -f platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build +Scanning dependencies of target TestCpuHarmonicAngleForce +Scanning dependencies of target TestCpuDispersionPME make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuNonbondedForce.cpp -Scanning dependencies of target TestCpuLangevinIntegrator -make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o +make -f platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend.internal". -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuPeriodicTorsionForce.cpp -make -f platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCompoundIntegrator.cpp +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuNonbondedForce.cpp +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/depend.internal". +Scanning dependencies of target TestCpuLangevinIntegrator +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o make -f platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuEwald.cpp -Scanning dependencies of target TestCpuDispersionPME -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend.internal". -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target TestCpuRBTorsionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCheckpoints.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o +make -f platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuPeriodicTorsionForce.cpp +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCustomGBForce.cpp +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuGayBerneForce.cpp -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuEwald.cpp make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/depend +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuDispersionPME.cpp +make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCustomGBForce.cpp +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/DependInfo.cmake --color= +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/DependInfo.cmake --color= -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuHarmonicAngleForce.cpp -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuRBTorsionForce.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuLangevinIntegrator.cpp -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuDispersionPME.cpp -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/depend.internal". -Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/depend.internal". -Scanning dependencies of target TestCpuCustomManyParticleForce -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCustomManyParticleForce.cpp -[ 95%] Linking CXX executable ../../../TestCpuSettle -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuSettle.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -o ../../../TestCpuSettle -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/DependInfo.cmake --color= +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend.internal". +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuLangevinIntegrator.cpp +Scanning dependencies of target TestCpuRBTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target TestCpuSettle -make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/depend +[ 93%] Built target OpenMMAmoebaReference +make -f platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/DependInfo.cmake --color= +make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/depend +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/depend.internal". +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/DependInfo.cmake --color= +Scanning dependencies of target TestCpuCustomManyParticleForce Scanning dependencies of target TestCpuCustomNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build -make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCustomNonbondedForce.cpp -[ 95%] Linking CXX executable ../../../TestCpuCheckpoints -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCheckpoints.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -o ../../../TestCpuCheckpoints -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target TestCpuCheckpoints -make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/depend +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuRBTorsionForce.cpp +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/DependInfo.cmake --color= Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/depend.internal". Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/depend.internal". +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCustomManyParticleForce.cpp Scanning dependencies of target TestCpuLangevinMiddleIntegrator make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build +[ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuCustomNonbondedForce.cpp make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o +[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuLangevinMiddleIntegrator.cpp -[ 97%] Linking CXX executable ../../../TestCpuRBTorsionForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuRBTorsionForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -o ../../../TestCpuRBTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 97%] Linking CXX executable ../../../TestCpuHarmonicAngleForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuHarmonicAngleForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -o ../../../TestCpuHarmonicAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 95%] Linking CXX executable ../../../TestCpuSettle +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuSettle.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -o ../../../TestCpuSettle -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuRBTorsionForce +[ 95%] Built target TestCpuSettle make -f platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/DependInfo.cmake --color= @@ -5007,10 +4836,13 @@ make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o +[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuGBSAOBCForce.cpp +[ 95%] Linking CXX executable ../../../TestCpuCheckpoints +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCheckpoints.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -o ../../../TestCpuCheckpoints -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuHarmonicAngleForce +[ 95%] Built target TestCpuCheckpoints make -f platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/depend make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/DependInfo.cmake --color= @@ -5020,88 +4852,291 @@ make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o +[ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/cpu/src -I/build/openmm-7.5.0+dfsg/platforms/cpu/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o -c /build/openmm-7.5.0+dfsg/platforms/cpu/tests/TestCpuNeighborList.cpp -[ 97%] Linking CXX executable ../../../../../TestReferenceHippoNonbondedForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHippoNonbondedForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -o ../../../../../TestReferenceHippoNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread -[ 97%] Linking CXX executable ../../../TestCpuPeriodicTorsionForce +[ 95%] Linking CXX executable ../../../TestCpuPeriodicTorsionForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuPeriodicTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -o ../../../TestCpuPeriodicTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 95%] Linking CXX executable ../../../TestCpuRBTorsionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuRBTorsionForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -o ../../../TestCpuRBTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Linking CXX executable ../../../TestCpuGayBerneForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuGayBerneForce.dir/link.txt --verbose=1 -[ 97%] Built target TestReferenceHippoNonbondedForce -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -o ../../../TestCpuGayBerneForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +[ 95%] Built target TestCpuPeriodicTorsionForce +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/depend.internal". +Scanning dependencies of target TestReferenceAmoebaAngleForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaAngleForce.dir/TestReferenceAmoebaAngleForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaAngleForce.dir/TestReferenceAmoebaAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaAngleForce.cpp make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuPeriodicTorsionForce -[ 97%] Linking CXX executable ../../../TestCpuLangevinIntegrator +[ 95%] Built target TestCpuRBTorsionForce +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/depend.internal". +Scanning dependencies of target TestReferenceAmoebaBondForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaBondForce.dir/TestReferenceAmoebaBondForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaBondForce.dir/TestReferenceAmoebaBondForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaBondForce.cpp +[ 95%] Linking CXX executable ../../../TestCpuHarmonicAngleForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuHarmonicAngleForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -o ../../../TestCpuHarmonicAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 95%] Linking CXX executable ../../../TestCpuGayBerneForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuGayBerneForce.dir/link.txt --verbose=1 +[ 95%] Linking CXX executable ../../../TestCpuLangevinIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuLangevinIntegrator.dir/link.txt --verbose=1 +[ 95%] Built target TestCpuHarmonicAngleForce +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -o ../../../TestCpuGayBerneForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -o ../../../TestCpuLangevinIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/depend.internal". +Scanning dependencies of target TestReferenceAmoebaExtrapolatedPolarization +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaExtrapolatedPolarization.cpp +[ 95%] Linking CXX executable ../../../TestCpuLangevinMiddleIntegrator +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -o ../../../TestCpuLangevinMiddleIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 95%] Built target TestCpuLangevinIntegrator +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/depend +[ 95%] Built target TestCpuGayBerneForce +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/depend.internal". +Scanning dependencies of target TestReferenceAmoebaInPlaneAngleForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/TestReferenceAmoebaInPlaneAngleForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/TestReferenceAmoebaInPlaneAngleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaInPlaneAngleForce.cpp +Scanning dependencies of target TestReferenceAmoebaGeneralizedKirkwoodForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuGayBerneForce +[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp +[ 95%] Built target TestCpuLangevinMiddleIntegrator +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend.internal". +Scanning dependencies of target TestReferenceAmoebaMultipoleForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuLangevinIntegrator -[ 97%] Linking CXX executable ../../../TestCpuCompoundIntegrator +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaMultipoleForce.cpp +[ 95%] Linking CXX executable ../../../TestCpuCompoundIntegrator cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCompoundIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o -o ../../../TestCpuCompoundIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread -make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuCompoundIntegrator -[ 97%] Linking CXX executable ../../../TestCpuNeighborList +[ 95%] Linking CXX executable ../../../TestCpuGBSAOBCForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuGBSAOBCForce.dir/link.txt --verbose=1 +[ 95%] Linking CXX executable ../../../TestCpuNeighborList cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuNeighborList.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -o ../../../TestCpuGBSAOBCForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o -o ../../../TestCpuNeighborList -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuNeighborList -[ 97%] Linking CXX executable ../../../../../TestReferenceAmoebaMultipoleForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -o ../../../../../TestReferenceAmoebaMultipoleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +[ 95%] Built target TestCpuCompoundIntegrator +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Linking CXX executable ../../../TestCpuNonbondedForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuNonbondedForce.dir/link.txt --verbose=1 -[ 97%] Built target TestReferenceAmoebaMultipoleForce -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -o ../../../TestCpuNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread -[ 97%] Linking CXX executable ../../../TestCpuGBSAOBCForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuGBSAOBCForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -o ../../../TestCpuGBSAOBCForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/depend.internal". +[ 95%] Built target TestCpuGBSAOBCForce +Scanning dependencies of target TestReferenceAmoebaOutOfPlaneBendForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuNonbondedForce +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuGBSAOBCForce -[ 97%] Linking CXX executable ../../../TestCpuLangevinMiddleIntegrator -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -o ../../../TestCpuLangevinMiddleIntegrator -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/depend.internal". +[ 95%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/TestReferenceAmoebaOutOfPlaneBendForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/TestReferenceAmoebaOutOfPlaneBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaOutOfPlaneBendForce.cpp +Scanning dependencies of target TestReferenceAmoebaPiTorsionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuLangevinMiddleIntegrator -[ 97%] Linking CXX executable ../../../TestCpuCustomManyParticleForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomManyParticleForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -o ../../../TestCpuCustomManyParticleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 95%] Built target TestCpuNeighborList +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/DependInfo.cmake --color= +[ 97%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/TestReferenceAmoebaPiTorsionForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/TestReferenceAmoebaPiTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaPiTorsionForce.cpp +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/depend.internal". +Scanning dependencies of target TestReferenceHippoNonbondedForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target TestCpuCustomManyParticleForce +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[ 97%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceHippoNonbondedForce.cpp [100%] Linking CXX executable ../../../TestCpuCustomGBForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomGBForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -o ../../../TestCpuCustomGBForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread -[100%] Linking CXX executable ../../../../../TestReferenceAmoebaVdwForce -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaVdwForce.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -o ../../../../../TestReferenceAmoebaVdwForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuCustomGBForce +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend.internal". +Scanning dependencies of target TestReferenceWcaDispersionForce make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[100%] Built target TestReferenceAmoebaVdwForce -[100%] Linking CXX executable ../../../TestCpuDispersionPME -cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuDispersionPME.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -o ../../../TestCpuDispersionPME -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceWcaDispersionForce.cpp +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaBondForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaBondForce.dir/link.txt --verbose=1 +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaAngleForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaAngleForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaBondForce.dir/TestReferenceAmoebaBondForce.cpp.o -o ../../../../../TestReferenceAmoebaBondForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaAngleForce.dir/TestReferenceAmoebaAngleForce.cpp.o -o ../../../../../TestReferenceAmoebaAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' -[100%] Built target TestCpuDispersionPME +[100%] Built target TestReferenceAmoebaBondForce +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/depend.internal". +Scanning dependencies of target TestReferenceAmoebaStretchBendForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/TestReferenceAmoebaStretchBendForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/TestReferenceAmoebaStretchBendForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaStretchBendForce.cpp +[100%] Built target TestReferenceAmoebaAngleForce +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend.internal". +Scanning dependencies of target TestReferenceAmoebaTorsionTorsionForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaTorsionTorsionForce.cpp +[100%] Linking CXX executable ../../../TestCpuCustomManyParticleForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomManyParticleForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -o ../../../TestCpuCustomManyParticleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestCpuCustomManyParticleForce +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-7.5.0+dfsg /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/DependInfo.cmake --color= +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/DependInfo.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend.internal". +Dependee "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend.internal". +Scanning dependencies of target TestReferenceAmoebaVdwForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build +make[4]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=5 -I/build/openmm-7.5.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/platforms/reference/src -I/build/openmm-7.5.0+dfsg/platforms/reference/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/src -I/build/openmm-7.5.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-7.5.0+dfsg/plugins/amoeba/./include -I/build/openmm-7.5.0+dfsg/src -I/build/openmm-7.5.0+dfsg/libraries/asmjit -I/build/openmm-7.5.0+dfsg/libraries/vecmath/include -I/build/openmm-7.5.0+dfsg/libraries/irrxml/include -I/build/openmm-7.5.0+dfsg/serialization/include -I/build/openmm-7.5.0+dfsg/libraries/csha1/include -I/build/openmm-7.5.0+dfsg/libraries/hilbert/include -I/build/openmm-7.5.0+dfsg/libraries/lbfgs/include -I/build/openmm-7.5.0+dfsg/libraries/sfmt/include -I/build/openmm-7.5.0+dfsg/libraries/lepton/include -I/build/openmm-7.5.0+dfsg/libraries/quern/include -I/build/openmm-7.5.0+dfsg/libraries/jama/include -I/build/openmm-7.5.0+dfsg/olla/include -I/build/openmm-7.5.0+dfsg/openmmapi/include -I/build/openmm-7.5.0+dfsg/./include -I/build/openmm-7.5.0+dfsg/tests -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -o CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -c /build/openmm-7.5.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaVdwForce.cpp +[100%] Linking CXX executable ../../../TestCpuNonbondedForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuNonbondedForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -o ../../../TestCpuNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaPiTorsionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaPiTorsionForce.dir/TestReferenceAmoebaPiTorsionForce.cpp.o -o ../../../../../TestReferenceAmoebaPiTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaGeneralizedKirkwoodForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/link.txt --verbose=1 +[100%] Built target TestReferenceAmoebaPiTorsionForce +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaInPlaneAngleForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -o ../../../../../TestReferenceAmoebaGeneralizedKirkwoodForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaInPlaneAngleForce.dir/TestReferenceAmoebaInPlaneAngleForce.cpp.o -o ../../../../../TestReferenceAmoebaInPlaneAngleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestCpuNonbondedForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestReferenceAmoebaInPlaneAngleForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestReferenceAmoebaGeneralizedKirkwoodForce +[100%] Linking CXX executable ../../../../../TestReferenceWcaDispersionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceWcaDispersionForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -o ../../../../../TestReferenceWcaDispersionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestReferenceWcaDispersionForce +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaStretchBendForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaStretchBendForce.dir/TestReferenceAmoebaStretchBendForce.cpp.o -o ../../../../../TestReferenceAmoebaStretchBendForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaTorsionTorsionForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -o ../../../../../TestReferenceAmoebaTorsionTorsionForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestReferenceAmoebaStretchBendForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestReferenceAmoebaTorsionTorsionForce +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaOutOfPlaneBendForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaOutOfPlaneBendForce.dir/TestReferenceAmoebaOutOfPlaneBendForce.cpp.o -o ../../../../../TestReferenceAmoebaOutOfPlaneBendForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaExtrapolatedPolarization +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -o ../../../../../TestReferenceAmoebaExtrapolatedPolarization -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestReferenceAmoebaOutOfPlaneBendForce +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestReferenceAmoebaExtrapolatedPolarization [100%] Linking CXX executable ../../../TestCpuCustomNonbondedForce cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -o ../../../TestCpuCustomNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuCustomNonbondedForce +[100%] Linking CXX executable ../../../../../TestReferenceHippoNonbondedForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHippoNonbondedForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -o ../../../../../TestReferenceHippoNonbondedForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestReferenceHippoNonbondedForce +[100%] Linking CXX executable ../../../TestCpuDispersionPME +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuDispersionPME.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -o ../../../TestCpuDispersionPME -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestCpuDispersionPME +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaMultipoleForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -o ../../../../../TestReferenceAmoebaMultipoleForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestReferenceAmoebaMultipoleForce [100%] Linking CXX executable ../../../TestCpuEwald cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuEwald.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -o ../../../TestCpuEwald -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.5 -ldl -lpthread make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuEwald +[100%] Linking CXX executable ../../../../../TestReferenceAmoebaVdwForce +cd /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaVdwForce.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/openmm-7.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -o ../../../../../TestReferenceAmoebaVdwForce -Wl,-rpath,/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.5 -ldl -lpthread +make[4]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' +[100%] Built target TestReferenceAmoebaVdwForce make[3]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' @@ -5116,7 +5151,7 @@ data_files [] description Python wrapper for OpenMM (a C++ MD package) download_url https://simtk.org/home/openmm - ext_modules[, ] + ext_modules[, ] license Python Software Foundation License (BSD-like) long_descriptionOpenMM is a toolkit for molecular simulation. It can be used either as a stand-alone application for running simulations, or as a library you call @@ -5139,46 +5174,46 @@ copying simtk/__init__.py -> build/lib.linux-x86_64-3.9/simtk creating build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/unit_operators.py -> build/lib.linux-x86_64-3.9/simtk/unit -copying simtk/unit/unit_definitions.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/unit_math.py -> build/lib.linux-x86_64-3.9/simtk/unit +copying simtk/unit/unit_definitions.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/unit.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/standard_dimensions.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/quantity.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/prefix.py -> build/lib.linux-x86_64-3.9/simtk/unit +copying simtk/unit/constants.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/mymatrix.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/doctests.py -> build/lib.linux-x86_64-3.9/simtk/unit -copying simtk/unit/constants.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/baseunit.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/basedimension.py -> build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/__init__.py -> build/lib.linux-x86_64-3.9/simtk/unit creating build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/openmm.py -> build/lib.linux-x86_64-3.9/simtk/openmm -copying simtk/openmm/vec3.py -> build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/mtsintegrator.py -> build/lib.linux-x86_64-3.9/simtk/openmm -copying simtk/openmm/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm +copying simtk/openmm/vec3.py -> build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/amd.py -> build/lib.linux-x86_64-3.9/simtk/openmm +copying simtk/openmm/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/version.py -> build/lib.linux-x86_64-3.9/simtk/openmm creating build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/topology.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app -copying simtk/openmm/app/statedatareporter.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/simulation.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app +copying simtk/openmm/app/statedatareporter.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/simulatedtempering.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app -copying simtk/openmm/app/pdbxfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/pdbreporter.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app +copying simtk/openmm/app/pdbxfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/pdbfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app -copying simtk/openmm/app/modeller.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/metadynamics.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app -copying simtk/openmm/app/gromacstopfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app +copying simtk/openmm/app/modeller.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/gromacsgrofile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/forcefield.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/element.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app +copying simtk/openmm/app/gromacstopfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/desmonddmsfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/dcdreporter.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/dcdfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/checkpointreporter.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/charmmpsffile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app -copying simtk/openmm/app/charmmcrdfiles.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/charmmparameterset.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app +copying simtk/openmm/app/charmmcrdfiles.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/amberprmtopfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/amberinpcrdfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app @@ -5190,8 +5225,8 @@ copying simtk/openmm/app/internal/amber_file_parser.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal copying simtk/openmm/app/internal/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal creating build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm -copying simtk/openmm/app/internal/charmm/topologyobjects.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm copying simtk/openmm/app/internal/charmm/exceptions.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm +copying simtk/openmm/app/internal/charmm/topologyobjects.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm copying simtk/openmm/app/internal/charmm/_charmmfile.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm copying simtk/openmm/app/internal/charmm/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/charmm creating build/lib.linux-x86_64-3.9/simtk/openmm/app/internal/pdbx @@ -5214,25 +5249,25 @@ copying simtk/openmm/app/data/tip3pfb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/tip3p.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/spce.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data -copying simtk/openmm/app/data/pdbNames.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/swm4ndp.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/residues.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data +copying simtk/openmm/app/data/pdbNames.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/iamoeba.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data -copying simtk/openmm/app/data/hydrogens.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/charmm_polar_2019.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data +copying simtk/openmm/app/data/hydrogens.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/charmm_polar_2013.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/charmm36.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data +copying simtk/openmm/app/data/amoeba2013_gk.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amoeba2013.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amoeba2009_gk.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amoeba2009.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data -copying simtk/openmm/app/data/amoeba2013_gk.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amberfb15.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber99sbnmr.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data -copying simtk/openmm/app/data/amber99Test.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber99sbildn.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data +copying simtk/openmm/app/data/amber99_obc.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber99sb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data +copying simtk/openmm/app/data/amber99Test.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber96_obc.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data -copying simtk/openmm/app/data/amber99_obc.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber96.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber14-all.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/amber10_obc.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data @@ -5245,20 +5280,20 @@ copying simtk/openmm/app/data/tip3p.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/test.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/spce.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data -copying simtk/openmm/app/data/POPE.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/POPC.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data +copying simtk/openmm/app/data/POPE.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/DPPC.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/DOPC.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/DMPC.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/DLPE.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data copying simtk/openmm/app/data/DLPC.pdb -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data creating build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 -copying simtk/openmm/app/data/amber14/tip3pfb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 +copying simtk/openmm/app/data/amber14/tip4pfb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/tip4pew.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 +copying simtk/openmm/app/data/amber14/protein.ff15ipq.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/tip3p.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 +copying simtk/openmm/app/data/amber14/tip3pfb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/spce.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 -copying simtk/openmm/app/data/amber14/tip4pfb.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 -copying simtk/openmm/app/data/amber14/protein.ff15ipq.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/protein.ff14SB.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/lipid17.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 copying simtk/openmm/app/data/amber14/RNA.OL3.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/amber14 @@ -5268,11 +5303,11 @@ copying simtk/openmm/app/data/charmm36/water.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/tip5pew.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/tip5p.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 -copying simtk/openmm/app/data/charmm36/tip4p2005.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/tip4pew.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 +copying simtk/openmm/app/data/charmm36/tip4p2005.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/tip3p-pme-f.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 -copying simtk/openmm/app/data/charmm36/tip3p-pme-b.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 copying simtk/openmm/app/data/charmm36/spce.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 +copying simtk/openmm/app/data/charmm36/tip3p-pme-b.xml -> build/lib.linux-x86_64-3.9/simtk/openmm/app/data/charmm36 running build_ext building 'simtk.openmm._openmm' extension creating build/temp.linux-x86_64-3.9 @@ -5374,10 +5409,10 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/openmm-7.5.0+dfsg' dh_auto_test - cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=-j16 + cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process -j16 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu Start 1: TestReferenceAndersenThermostat Start 2: TestReferenceBrownianIntegrator @@ -5394,233 +5429,233 @@ Start 13: TestReferenceCustomGBForce Start 14: TestReferenceCustomHbondForce Start 15: TestReferenceCustomIntegrator + 1/119 Test #3: TestReferenceCMAPTorsionForce ................. Passed 0.22 sec Start 16: TestReferenceCustomManyParticleForce - 1/119 Test #3: TestReferenceCMAPTorsionForce ................. Passed 0.05 sec + 2/119 Test #4: TestReferenceCMMotionRemover .................. Passed 0.26 sec Start 17: TestReferenceCustomNonbondedForce - 2/119 Test #4: TestReferenceCMMotionRemover .................. Passed 0.05 sec + 3/119 Test #6: TestReferenceCompoundIntegrator ............... Passed 0.25 sec Start 18: TestReferenceCustomTorsionForce - 3/119 Test #6: TestReferenceCompoundIntegrator ............... Passed 0.06 sec + 4/119 Test #7: TestReferenceCustomAngleForce ................. Passed 0.25 sec Start 19: TestReferenceDispersionPME - 4/119 Test #7: TestReferenceCustomAngleForce ................. Passed 0.06 sec + 5/119 Test #8: TestReferenceCustomBondForce .................. Passed 0.26 sec Start 20: TestReferenceEwald - 5/119 Test #8: TestReferenceCustomBondForce .................. Passed 0.07 sec + 6/119 Test #9: TestReferenceCustomCVForce .................... Passed 0.25 sec Start 21: TestReferenceGBSAOBCForce - 6/119 Test #9: TestReferenceCustomCVForce .................... Passed 0.07 sec + 7/119 Test #10: TestReferenceCustomCentroidBondForce .......... Passed 0.26 sec Start 22: TestReferenceGayBerneForce - 7/119 Test #10: TestReferenceCustomCentroidBondForce .......... Passed 0.08 sec + 8/119 Test #14: TestReferenceCustomHbondForce ................. Passed 0.22 sec Start 23: TestReferenceHarmonicAngleForce - 8/119 Test #12: TestReferenceCustomExternalForce .............. Passed 0.09 sec + 9/119 Test #12: TestReferenceCustomExternalForce .............. Passed 0.28 sec Start 24: TestReferenceHarmonicBondForce - 9/119 Test #14: TestReferenceCustomHbondForce ................. Passed 0.08 sec + 10/119 Test #11: TestReferenceCustomCompoundBondForce .......... Passed 0.31 sec Start 25: TestReferenceKineticEnergy - 10/119 Test #11: TestReferenceCustomCompoundBondForce .......... Passed 0.11 sec + 11/119 Test #18: TestReferenceCustomTorsionForce ............... Passed 0.17 sec Start 26: TestReferenceLangevinIntegrator - 11/119 Test #18: TestReferenceCustomTorsionForce ............... Passed 0.09 sec + 12/119 Test #23: TestReferenceHarmonicAngleForce ............... Passed 0.08 sec Start 27: TestReferenceLangevinMiddleIntegrator - 12/119 Test #23: TestReferenceHarmonicAngleForce ............... Passed 0.06 sec + 13/119 Test #24: TestReferenceHarmonicBondForce ................ Passed 0.08 sec Start 28: TestReferenceLocalEnergyMinimizer - 13/119 Test #24: TestReferenceHarmonicBondForce ................ Passed 0.05 sec + 14/119 Test #25: TestReferenceKineticEnergy .................... Passed 0.08 sec Start 29: TestReferenceMonteCarloAnisotropicBarostat - 14/119 Test #25: TestReferenceKineticEnergy .................... Passed 0.05 sec + 15/119 Test #22: TestReferenceGayBerneForce .................... Passed 0.31 sec Start 30: TestReferenceMonteCarloBarostat - 15/119 Test #22: TestReferenceGayBerneForce .................... Passed 0.12 sec + 16/119 Test #5: TestReferenceCheckpoints ...................... Passed 0.96 sec Start 31: TestReferenceMonteCarloMembraneBarostat - 16/119 Test #5: TestReferenceCheckpoints ...................... Passed 0.28 sec + 17/119 Test #2: TestReferenceBrownianIntegrator ............... Passed 1.14 sec Start 32: TestReferenceNeighborList - 17/119 Test #2: TestReferenceBrownianIntegrator ............... Passed 0.35 sec + 18/119 Test #26: TestReferenceLangevinIntegrator ............... Passed 0.70 sec Start 33: TestReferenceNonbondedForce - 18/119 Test #26: TestReferenceLangevinIntegrator ............... Passed 0.27 sec + 19/119 Test #32: TestReferenceNeighborList ..................... Passed 0.34 sec Start 34: TestReferenceNoseHooverIntegrator - 19/119 Test #13: TestReferenceCustomGBForce .................... Passed 0.38 sec + 20/119 Test #1: TestReferenceAndersenThermostat ............... Passed 1.66 sec Start 35: TestReferencePeriodicTorsionForce - 20/119 Test #35: TestReferencePeriodicTorsionForce ............. Passed 0.02 sec + 21/119 Test #35: TestReferencePeriodicTorsionForce ............. Passed 0.03 sec Start 36: TestReferenceRBTorsionForce - 21/119 Test #36: TestReferenceRBTorsionForce ................... Passed 0.02 sec + 22/119 Test #36: TestReferenceRBTorsionForce ................... Passed 0.04 sec Start 37: TestReferenceRMSDForce - 22/119 Test #37: TestReferenceRMSDForce ........................ Passed 0.02 sec + 23/119 Test #37: TestReferenceRMSDForce ........................ Passed 0.03 sec Start 38: TestReferenceRandom - 23/119 Test #32: TestReferenceNeighborList ..................... Passed 0.22 sec + 24/119 Test #13: TestReferenceCustomGBForce .................... Passed 1.58 sec Start 39: TestReferenceSettle - 24/119 Test #1: TestReferenceAndersenThermostat ............... Passed 0.61 sec + 25/119 Test #39: TestReferenceSettle ........................... Passed 0.26 sec Start 40: TestReferenceVariableLangevinIntegrator - 25/119 Test #39: TestReferenceSettle ........................... Passed 0.17 sec + 26/119 Test #38: TestReferenceRandom ........................... Passed 2.41 sec Start 41: TestReferenceVariableVerletIntegrator - 26/119 Test #30: TestReferenceMonteCarloBarostat ............... Passed 0.93 sec + 27/119 Test #30: TestReferenceMonteCarloBarostat ............... Passed 3.64 sec Start 42: TestReferenceVerletIntegrator - 27/119 Test #38: TestReferenceRandom ........................... Passed 1.38 sec + 28/119 Test #33: TestReferenceNonbondedForce ................... Passed 4.10 sec Start 43: TestReferenceVirtualSites - 28/119 Test #33: TestReferenceNonbondedForce ................... Passed 1.56 sec + 29/119 Test #43: TestReferenceVirtualSites ..................... Passed 0.26 sec Start 44: TestCpuCheckpoints - 29/119 Test #43: TestReferenceVirtualSites ..................... Passed 0.20 sec + 30/119 Test #15: TestReferenceCustomIntegrator ................. Passed 7.99 sec Start 45: TestCpuCompoundIntegrator - 30/119 Test #15: TestReferenceCustomIntegrator ................. Passed 2.12 sec + 31/119 Test #27: TestReferenceLangevinMiddleIntegrator ......... Passed 7.81 sec Start 46: TestCpuCustomGBForce - 31/119 Test #42: TestReferenceVerletIntegrator ................. Passed 1.55 sec + 32/119 Test #42: TestReferenceVerletIntegrator ................. Passed 4.68 sec Start 47: TestCpuCustomManyParticleForce - 32/119 Test #27: TestReferenceLangevinMiddleIntegrator ......... Passed 2.87 sec + 33/119 Test #31: TestReferenceMonteCarloMembraneBarostat ....... Passed 8.73 sec Start 48: TestCpuCustomNonbondedForce - 33/119 Test #31: TestReferenceMonteCarloMembraneBarostat ....... Passed 3.12 sec + 34/119 Test #20: TestReferenceEwald ............................ Passed 9.58 sec Start 49: TestCpuDispersionPME - 34/119 Test #20: TestReferenceEwald ............................ Passed 3.32 sec + 35/119 Test #28: TestReferenceLocalEnergyMinimizer ............. Passed 11.25 sec Start 50: TestCpuEwald - 35/119 Test #29: TestReferenceMonteCarloAnisotropicBarostat .... Passed 3.27 sec + 36/119 Test #21: TestReferenceGBSAOBCForce ..................... Passed 12.44 sec Start 51: TestCpuGBSAOBCForce - 36/119 Test #21: TestReferenceGBSAOBCForce ..................... Passed 3.72 sec + 37/119 Test #29: TestReferenceMonteCarloAnisotropicBarostat .... Passed 13.37 sec Start 52: TestCpuGayBerneForce - 37/119 Test #28: TestReferenceLocalEnergyMinimizer ............. Passed 3.66 sec + 38/119 Test #44: TestCpuCheckpoints ............................ Passed 8.48 sec Start 53: TestCpuHarmonicAngleForce - 38/119 Test #44: TestCpuCheckpoints ............................ Passed 2.01 sec + 39/119 Test #53: TestCpuHarmonicAngleForce ..................... Passed 0.22 sec Start 54: TestCpuLangevinIntegrator - 39/119 Test #53: TestCpuHarmonicAngleForce ..................... Passed 0.11 sec + 40/119 Test #46: TestCpuCustomGBForce .......................... Passed 8.76 sec Start 55: TestCpuLangevinMiddleIntegrator - 40/119 Test #46: TestCpuCustomGBForce .......................... Passed 3.34 sec + 41/119 Test #19: TestReferenceDispersionPME .................... Passed 20.01 sec Start 56: TestCpuNeighborList - 41/119 Test #56: TestCpuNeighborList ........................... Passed 0.22 sec + 42/119 Test #51: TestCpuGBSAOBCForce ........................... Passed 7.56 sec Start 57: TestCpuNonbondedForce - 42/119 Test #51: TestCpuGBSAOBCForce ........................... Passed 3.16 sec + 43/119 Test #56: TestCpuNeighborList ........................... Passed 0.52 sec Start 58: TestCpuPeriodicTorsionForce - 43/119 Test #19: TestReferenceDispersionPME .................... Passed 6.58 sec + 44/119 Test #58: TestCpuPeriodicTorsionForce ................... Passed 0.22 sec Start 59: TestCpuRBTorsionForce - 44/119 Test #59: TestCpuRBTorsionForce ......................... Passed 0.04 sec + 45/119 Test #59: TestCpuRBTorsionForce ......................... Passed 0.23 sec Start 60: TestCpuSettle - 45/119 Test #58: TestCpuPeriodicTorsionForce ................... Passed 0.13 sec + 46/119 Test #50: TestCpuEwald .................................. Passed 12.78 sec Start 61: TestReferenceAmoebaAngleForce - 46/119 Test #61: TestReferenceAmoebaAngleForce ................. Passed 0.02 sec + 47/119 Test #61: TestReferenceAmoebaAngleForce ................. Passed 0.04 sec Start 62: TestReferenceAmoebaBondForce - 47/119 Test #62: TestReferenceAmoebaBondForce .................. Passed 0.02 sec + 48/119 Test #62: TestReferenceAmoebaBondForce .................. Passed 0.04 sec Start 63: TestReferenceAmoebaExtrapolatedPolarization - 48/119 Test #52: TestCpuGayBerneForce .......................... Passed 3.11 sec + 49/119 Test #49: TestCpuDispersionPME .......................... Passed 19.12 sec Start 64: TestReferenceAmoebaGeneralizedKirkwoodForce - 49/119 Test #34: TestReferenceNoseHooverIntegrator ............. Passed 8.99 sec + 50/119 Test #57: TestCpuNonbondedForce ......................... Passed 10.16 sec Start 65: TestReferenceAmoebaInPlaneAngleForce - 50/119 Test #65: TestReferenceAmoebaInPlaneAngleForce .......... Passed 0.01 sec + 51/119 Test #65: TestReferenceAmoebaInPlaneAngleForce .......... Passed 0.03 sec Start 66: TestReferenceAmoebaMultipoleForce - 51/119 Test #57: TestCpuNonbondedForce ......................... Passed 4.54 sec + 52/119 Test #63: TestReferenceAmoebaExtrapolatedPolarization ... Passed 10.49 sec Start 67: TestReferenceAmoebaOutOfPlaneBendForce - 52/119 Test #67: TestReferenceAmoebaOutOfPlaneBendForce ........ Passed 0.01 sec + 53/119 Test #67: TestReferenceAmoebaOutOfPlaneBendForce ........ Passed 0.02 sec Start 68: TestReferenceAmoebaPiTorsionForce - 53/119 Test #68: TestReferenceAmoebaPiTorsionForce ............. Passed 0.01 sec + 54/119 Test #68: TestReferenceAmoebaPiTorsionForce ............. Passed 0.03 sec Start 69: TestReferenceAmoebaStretchBendForce - 54/119 Test #69: TestReferenceAmoebaStretchBendForce ........... Passed 0.01 sec + 55/119 Test #69: TestReferenceAmoebaStretchBendForce ........... Passed 0.02 sec Start 70: TestReferenceAmoebaTorsionTorsionForce - 55/119 Test #70: TestReferenceAmoebaTorsionTorsionForce ........ Passed 0.02 sec + 56/119 Test #70: TestReferenceAmoebaTorsionTorsionForce ........ Passed 0.03 sec Start 71: TestReferenceAmoebaVdwForce - 56/119 Test #63: TestReferenceAmoebaExtrapolatedPolarization ... Passed 3.56 sec + 57/119 Test #71: TestReferenceAmoebaVdwForce ................... Passed 0.70 sec Start 72: TestReferenceHippoNonbondedForce - 57/119 Test #71: TestReferenceAmoebaVdwForce ................... Passed 0.24 sec + 58/119 Test #52: TestCpuGayBerneForce .......................... Passed 22.21 sec Start 73: TestReferenceWcaDispersionForce - 58/119 Test #73: TestReferenceWcaDispersionForce ............... Passed 0.01 sec + 59/119 Test #73: TestReferenceWcaDispersionForce ............... Passed 0.02 sec Start 74: TestReferenceRpmd - 59/119 Test #50: TestCpuEwald .................................. Passed 7.32 sec + 60/119 Test #41: TestReferenceVariableVerletIntegrator ......... Passed 34.55 sec Start 75: TestReferenceDrudeForce - 60/119 Test #75: TestReferenceDrudeForce ....................... Passed 0.01 sec + 61/119 Test #72: TestReferenceHippoNonbondedForce .............. Passed 2.78 sec Start 76: TestReferenceDrudeLangevinIntegrator - 61/119 Test #41: TestReferenceVariableVerletIntegrator ......... Passed 10.61 sec + 62/119 Test #75: TestReferenceDrudeForce ....................... Passed 0.04 sec Start 77: TestReferenceDrudeNoseHoover - 62/119 Test #72: TestReferenceHippoNonbondedForce .............. Passed 0.99 sec + 63/119 Test #34: TestReferenceNoseHooverIntegrator ............. Passed 38.12 sec Start 78: TestReferenceDrudeSCFIntegrator - 63/119 Test #49: TestCpuDispersionPME .......................... Passed 8.13 sec + 64/119 Test #66: TestReferenceAmoebaMultipoleForce ............. Passed 9.34 sec Start 79: TestSerializationNode - 64/119 Test #79: TestSerializationNode ......................... Passed 0.01 sec + 65/119 Test #79: TestSerializationNode ......................... Passed 0.03 sec Start 80: TestSerializeAndersenThermostat - 65/119 Test #80: TestSerializeAndersenThermostat ............... Passed 0.02 sec + 66/119 Test #80: TestSerializeAndersenThermostat ............... Passed 0.03 sec Start 81: TestSerializeCMAPTorsion - 66/119 Test #81: TestSerializeCMAPTorsion ...................... Passed 0.02 sec + 67/119 Test #81: TestSerializeCMAPTorsion ...................... Passed 0.01 sec Start 82: TestSerializeCMMotionRemover - 67/119 Test #82: TestSerializeCMMotionRemover .................. Passed 0.01 sec + 68/119 Test #82: TestSerializeCMMotionRemover .................. Passed 0.02 sec Start 83: TestSerializeCustomAngleForce - 68/119 Test #83: TestSerializeCustomAngleForce ................. Passed 0.01 sec + 69/119 Test #83: TestSerializeCustomAngleForce ................. Passed 0.03 sec Start 84: TestSerializeCustomBondForce - 69/119 Test #84: TestSerializeCustomBondForce .................. Passed 0.01 sec + 70/119 Test #84: TestSerializeCustomBondForce .................. Passed 0.02 sec Start 85: TestSerializeCustomCVForce - 70/119 Test #85: TestSerializeCustomCVForce .................... Passed 0.02 sec + 71/119 Test #85: TestSerializeCustomCVForce .................... Passed 0.02 sec Start 86: TestSerializeCustomCentroidBondForce - 71/119 Test #86: TestSerializeCustomCentroidBondForce .......... Passed 0.02 sec + 72/119 Test #86: TestSerializeCustomCentroidBondForce .......... Passed 0.02 sec Start 87: TestSerializeCustomCompoundBondForce - 72/119 Test #87: TestSerializeCustomCompoundBondForce .......... Passed 0.02 sec + 73/119 Test #87: TestSerializeCustomCompoundBondForce .......... Passed 0.02 sec Start 88: TestSerializeCustomExternalForce - 73/119 Test #88: TestSerializeCustomExternalForce .............. Passed 0.01 sec + 74/119 Test #88: TestSerializeCustomExternalForce .............. Passed 0.02 sec Start 89: TestSerializeCustomGBForce - 74/119 Test #89: TestSerializeCustomGBForce .................... Passed 0.02 sec + 75/119 Test #89: TestSerializeCustomGBForce .................... Passed 0.01 sec Start 90: TestSerializeCustomHbondForce - 75/119 Test #90: TestSerializeCustomHbondForce ................. Passed 0.01 sec + 76/119 Test #90: TestSerializeCustomHbondForce ................. Passed 0.02 sec Start 91: TestSerializeCustomManyParticleForce - 76/119 Test #66: TestReferenceAmoebaMultipoleForce ............. Passed 2.22 sec + 77/119 Test #91: TestSerializeCustomManyParticleForce .......... Passed 0.03 sec Start 92: TestSerializeCustomNonbondedForce - 77/119 Test #91: TestSerializeCustomManyParticleForce .......... Passed 0.02 sec - Start 93: TestSerializeCustomTorsionForce 78/119 Test #92: TestSerializeCustomNonbondedForce ............. Passed 0.01 sec + Start 93: TestSerializeCustomTorsionForce + 79/119 Test #93: TestSerializeCustomTorsionForce ............... Passed 0.03 sec Start 94: TestSerializeGBSAOBCForce - 79/119 Test #93: TestSerializeCustomTorsionForce ............... Passed 0.02 sec - Start 95: TestSerializeGayBerneForce 80/119 Test #94: TestSerializeGBSAOBCForce ..................... Passed 0.02 sec - Start 96: TestSerializeHarmonicAngleForce + Start 95: TestSerializeGayBerneForce 81/119 Test #95: TestSerializeGayBerneForce .................... Passed 0.02 sec + Start 96: TestSerializeHarmonicAngleForce + 82/119 Test #96: TestSerializeHarmonicAngleForce ............... Passed 0.02 sec Start 97: TestSerializeHarmonicBondForce - 82/119 Test #97: TestSerializeHarmonicBondForce ................ Passed 0.01 sec + 83/119 Test #97: TestSerializeHarmonicBondForce ................ Passed 0.01 sec Start 98: TestSerializeIntegrator - 83/119 Test #96: TestSerializeHarmonicAngleForce ............... Passed 0.03 sec + 84/119 Test #98: TestSerializeIntegrator ....................... Passed 0.04 sec Start 99: TestSerializeMonteCarloAnisotropicBarostat - 84/119 Test #98: TestSerializeIntegrator ....................... Passed 0.01 sec - Start 100: TestSerializeMonteCarloBarostat 85/119 Test #99: TestSerializeMonteCarloAnisotropicBarostat .... Passed 0.01 sec + Start 100: TestSerializeMonteCarloBarostat + 86/119 Test #100: TestSerializeMonteCarloBarostat ............... Passed 0.03 sec Start 101: TestSerializeMonteCarloMembraneBarostat - 86/119 Test #100: TestSerializeMonteCarloBarostat ............... Passed 0.02 sec + 87/119 Test #101: TestSerializeMonteCarloMembraneBarostat ....... Passed 0.03 sec Start 102: TestSerializeNonbondedForce - 87/119 Test #101: TestSerializeMonteCarloMembraneBarostat ....... Passed 0.02 sec + 88/119 Test #102: TestSerializeNonbondedForce ................... Passed 0.04 sec Start 103: TestSerializeNoseHooverIntegrator - 88/119 Test #102: TestSerializeNonbondedForce ................... Passed 0.02 sec - Start 104: TestSerializePeriodicTorsionForce 89/119 Test #103: TestSerializeNoseHooverIntegrator ............. Passed 0.02 sec + Start 104: TestSerializePeriodicTorsionForce + 90/119 Test #104: TestSerializePeriodicTorsionForce ............. Passed 0.01 sec Start 105: TestSerializeRBTorsionForce - 90/119 Test #104: TestSerializePeriodicTorsionForce ............. Passed 0.02 sec + 91/119 Test #105: TestSerializeRBTorsionForce ................... Passed 0.05 sec Start 106: TestSerializeRMSDForce - 91/119 Test #105: TestSerializeRBTorsionForce ................... Passed 0.02 sec - Start 107: TestSerializeState 92/119 Test #106: TestSerializeRMSDForce ........................ Passed 0.02 sec + Start 107: TestSerializeState + 93/119 Test #107: TestSerializeState ............................ Passed 0.11 sec Start 108: TestSerializeSystem - 93/119 Test #108: TestSerializeSystem ........................... Passed 0.02 sec + 94/119 Test #108: TestSerializeSystem ........................... Passed 0.02 sec Start 109: TestSerializeTabulatedFunctions - 94/119 Test #107: TestSerializeState ............................ Passed 0.04 sec + 95/119 Test #109: TestSerializeTabulatedFunctions ............... Passed 0.04 sec Start 110: TestEnforcePeriodicBox - 95/119 Test #109: TestSerializeTabulatedFunctions ............... Passed 0.03 sec + 96/119 Test #110: TestEnforcePeriodicBox ........................ Passed 0.06 sec Start 111: TestFindExclusions - 96/119 Test #111: TestFindExclusions ............................ Passed 0.01 sec + 97/119 Test #111: TestFindExclusions ............................ Passed 0.02 sec Start 112: TestFindMolecules - 97/119 Test #110: TestEnforcePeriodicBox ........................ Passed 0.04 sec + 98/119 Test #112: TestFindMolecules ............................. Passed 0.07 sec Start 113: TestParser - 98/119 Test #112: TestFindMolecules ............................. Passed 0.03 sec + 99/119 Test #113: TestParser .................................... Passed 0.18 sec Start 114: TestSplineFitter - 99/119 Test #113: TestParser .................................... Passed 0.03 sec +100/119 Test #114: TestSplineFitter .............................. Passed 0.08 sec Start 115: TestSystem -100/119 Test #115: TestSystem .................................... Passed 0.01 sec +101/119 Test #115: TestSystem .................................... Passed 0.04 sec Start 116: TestVectorExpression -101/119 Test #114: TestSplineFitter .............................. Passed 0.04 sec +102/119 Test #116: TestVectorExpression .......................... Passed 0.02 sec Start 117: TestVectorize -102/119 Test #116: TestVectorExpression .......................... Passed 0.01 sec +103/119 Test #117: TestVectorize ................................. Passed 0.03 sec Start 118: TestVectorizeAvx -103/119 Test #117: TestVectorize ................................. Passed 0.01 sec +104/119 Test #118: TestVectorizeAvx .............................. Passed 0.03 sec Start 119: TestVectorizeAvx2 -104/119 Test #118: TestVectorizeAvx .............................. Passed 0.02 sec -105/119 Test #119: TestVectorizeAvx2 ............................. Passed 0.01 sec -106/119 Test #60: TestCpuSettle ................................. Passed 7.19 sec -107/119 Test #64: TestReferenceAmoebaGeneralizedKirkwoodForce ... Passed 10.26 sec -108/119 Test #48: TestCpuCustomNonbondedForce ................... Passed 16.86 sec -109/119 Test #47: TestCpuCustomManyParticleForce ................ Passed 20.87 sec -110/119 Test #77: TestReferenceDrudeNoseHoover .................. Passed 13.22 sec -111/119 Test #76: TestReferenceDrudeLangevinIntegrator .......... Passed 17.56 sec -112/119 Test #16: TestReferenceCustomManyParticleForce .......... Passed 32.18 sec -113/119 Test #45: TestCpuCompoundIntegrator ..................... Passed 32.44 sec -114/119 Test #78: TestReferenceDrudeSCFIntegrator ............... Passed 25.80 sec -115/119 Test #40: TestReferenceVariableLangevinIntegrator ....... Passed 47.18 sec -116/119 Test #55: TestCpuLangevinMiddleIntegrator ............... Passed 47.81 sec -117/119 Test #74: TestReferenceRpmd ............................. Passed 44.73 sec -118/119 Test #54: TestCpuLangevinIntegrator ..................... Passed 54.69 sec -119/119 Test #17: TestReferenceCustomNonbondedForce ............. Passed 71.19 sec +105/119 Test #119: TestVectorizeAvx2 ............................. Passed 0.03 sec +106/119 Test #60: TestCpuSettle ................................. Passed 37.42 sec +107/119 Test #64: TestReferenceAmoebaGeneralizedKirkwoodForce ... Passed 32.54 sec +108/119 Test #47: TestCpuCustomManyParticleForce ................ Passed 59.53 sec +109/119 Test #77: TestReferenceDrudeNoseHoover .................. Passed 31.18 sec +110/119 Test #76: TestReferenceDrudeLangevinIntegrator .......... Passed 32.27 sec +111/119 Test #16: TestReferenceCustomManyParticleForce .......... Passed 73.82 sec +112/119 Test #48: TestCpuCustomNonbondedForce ................... Passed 75.20 sec +113/119 Test #45: TestCpuCompoundIntegrator ..................... Passed 78.19 sec +114/119 Test #78: TestReferenceDrudeSCFIntegrator ............... Passed 50.17 sec +115/119 Test #40: TestReferenceVariableLangevinIntegrator ....... Passed 91.26 sec +116/119 Test #55: TestCpuLangevinMiddleIntegrator ............... Passed 122.68 sec +117/119 Test #74: TestReferenceRpmd ............................. Passed 115.95 sec +118/119 Test #54: TestCpuLangevinIntegrator ..................... Passed 140.10 sec +119/119 Test #17: TestReferenceCustomNonbondedForce ............. Passed 232.39 sec 100% tests passed, 0 tests failed out of 119 -Total Test time (real) = 71.25 sec +Total Test time (real) = 233.01 sec make[2]: Leaving directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' cd obj-*/python/tests && PYTHONPATH=../build/lib.linux-$(arch)-$(py3versions -d | sed 's/^python//') pytest-3 ============================= test session starts ============================== @@ -5749,7 +5784,7 @@ warnings.warn("WARNING: duplicate atom (%s, %s)" % (atom, old_atom._pdb_string(old_atom.serial_number, atom.alternate_location_indicator))) -- Docs: https://docs.pytest.org/en/stable/warnings.html -========== 274 passed, 18 skipped, 26 warnings in 2255.11s (0:37:35) =========== +========== 274 passed, 18 skipped, 26 warnings in 2032.06s (0:33:52) =========== make[1]: Leaving directory '/build/openmm-7.5.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake @@ -5757,7 +5792,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/openmm-7.5.0+dfsg' dh_auto_install -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/openmm-7.5.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/openmm-7.5.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openmm-7.5.0+dfsg -B/build/openmm-7.5.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -6077,9 +6112,9 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake +dpkg-deb: building package 'libopenmm7.5-dbgsym' in '../libopenmm7.5-dbgsym_7.5.0+dfsg-1_amd64.deb'. dpkg-deb: building package 'libopenmm7.5' in '../libopenmm7.5_7.5.0+dfsg-1_amd64.deb'. dpkg-deb: building package 'libopenmm-dev' in '../libopenmm-dev_7.5.0+dfsg-1_amd64.deb'. -dpkg-deb: building package 'libopenmm7.5-dbgsym' in '../libopenmm7.5-dbgsym_7.5.0+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../openmm_7.5.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -6087,12 +6122,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/73363/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/73363/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3521941 and its subdirectories -I: Current time: Wed Feb 1 23:37:35 -12 2023 -I: pbuilder-time-stamp: 1675337855 +I: removing directory /srv/workspace/pbuilder/73363 and its subdirectories +I: Current time: Fri Dec 31 20:16:01 +14 2021 +I: pbuilder-time-stamp: 1640931361