Diff of the two buildlogs: -- --- b1/build.log 2024-07-19 19:20:26.128958381 +0000 +++ b2/build.log 2024-07-19 19:23:31.533082005 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jul 19 07:17:47 -12 2024 -I: pbuilder-time-stamp: 1721416667 +I: Current time: Fri Aug 22 15:43:29 +14 2025 +I: pbuilder-time-stamp: 1755827009 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./python-csb_1.2.5+dfsg-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.8doCU1Rs/trustedkeys.kbx': General error -gpgv: Signature made Thu Oct 3 00:07:20 2019 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.kNndEWC0/trustedkeys.kbx': General error +gpgv: Signature made Fri Oct 4 02:07:20 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -32,134 +32,165 @@ dpkg-source: info: applying fix_setup.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3249211/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/231357/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 22 15:43 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/231357/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/231357/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='6829009518d84eb0949998a559ebd86a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3249211' - PS1='# ' - PS2='> ' + INVOCATION_ID=b4e90c8921ae41c2b694f859493a47c9 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=231357 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d1lKmjJM/pbuilderrc_xfpp --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d1lKmjJM/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-5.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d1lKmjJM/pbuilderrc_FpCk --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d1lKmjJM/b2 --logfile b2/build.log python-csb_1.2.5+dfsg-5.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-23-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Mar 27 22:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Mar 27 22:09 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Mar 27 22:09 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Mar 27 22:09 more - -rwsr-xr-x 1 root root 55528 Mar 27 22:09 mount - -rwxr-xr-x 1 root root 18664 Mar 27 22:09 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 6 21:25 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Mar 27 22:09 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Jan 19 21:59 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Mar 27 22:09 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Mar 27 22:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/3249211/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Mar 29 2024 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Mar 29 2024 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Mar 29 2024 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Mar 29 2024 more + -rwsr-xr-x 1 root root 55528 Mar 29 2024 mount + -rwxr-xr-x 1 root root 18664 Mar 29 2024 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Aug 22 15:43 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Mar 29 2024 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Jan 20 2024 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Mar 29 2024 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Mar 29 2024 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/231357/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -294,7 +325,7 @@ Get: 85 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] -Fetched 55.2 MB in 1s (71.0 MB/s) +Fetched 55.2 MB in 1s (67.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) @@ -667,7 +698,11 @@ fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-5_source.changes +I: user script /srv/workspace/pbuilder/231357/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/231357/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-5_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-5 dpkg-buildpackage: info: source distribution unstable @@ -711,147 +746,147 @@ running build running build_py creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb -copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb copying csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test -copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test -copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io -copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io -copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io -copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric -copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric +copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test +copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test +copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech +copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech +copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech +copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core copying csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech -copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech -copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech -copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure +copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm +copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm +copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence +copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence +copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils +copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr +copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments +copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments +copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers +copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf +copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf +copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io -copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric -copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric +copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core -copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core +copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io +copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech -copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech -copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech +copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech +copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core +copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr -copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm +copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence +copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr +copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence -copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm -copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred -copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs -copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck -copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc -copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment +copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans -copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta -copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc +copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck +copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment -copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta +copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans +copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs +copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred +copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure -copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr -copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils -copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments -copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments -copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence -copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence -copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm -copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm -copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers -copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf -copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf -copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO @@ -935,10 +970,16 @@ /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:361: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.model1.pickle'> Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence \w - "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py:341: DeprecationWarning: invalid escape sequence \s - """ +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:32: DeprecationWarning: invalid escape sequence \s + re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:33: DeprecationWarning: invalid escape sequence \s + re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:34: DeprecationWarning: invalid escape sequence \s + re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:35: DeprecationWarning: invalid escape sequence \s + re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence \S + re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:31: DeprecationWarning: invalid escape sequence \s input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:32: DeprecationWarning: invalid escape sequence \d @@ -959,81 +1000,12 @@ g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:40: DeprecationWarning: invalid escape sequence \s '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:32: DeprecationWarning: invalid escape sequence \s - re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:33: DeprecationWarning: invalid escape sequence \s - re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:34: DeprecationWarning: invalid escape sequence \s - re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:35: DeprecationWarning: invalid escape sequence \s - re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence \S - re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py:341: DeprecationWarning: invalid escape sequence \s + """ +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence \w + "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? self.assertFalse(self.enum.C is 66) -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpypet3rvp' mode='r' encoding='UTF-8'> - content = open(self.temp.name).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testGzipFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testLock (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testLockGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testSimple (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testAllMarkers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testDel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1udpf6ck' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpa5m7mn8a' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'A/B/C/') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4dmgwiyi' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testFlush (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testExitCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok -testSTDERR (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok -testSTDOUT (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok -testArrayCompatibility (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpugl_kt4b' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testInsert (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testSQLDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testScalar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testSelect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testWhere (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpeqe5h_g2' mode='r' encoding='UTF-8'> - self.assertEqual(data, open(temp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok -testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000122] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) @@ -1121,113 +1093,178 @@ testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzhb3rdz0' mode='r' encoding='UTF-8'> +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0xk1nbdh' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpku8_mrwt' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqkpuxeze' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok -testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok -testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok -testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok -testGetAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok -testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok -testNegative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok -testPositive (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok -testAtomContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testCompare (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testCutoff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testPosition (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testResidueContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok -testFromAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok -testFromShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok -testFromString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok -testGetAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok -testMatch (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok -testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok -testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok -testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok -testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok -testIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok -testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok -testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testLen (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testMaxIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testMinIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testNumProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok -testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok -testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> - content = open(filename).read() +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok +testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok +testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok +testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok +testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> + self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok -testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) -@see: [CSB 0000056] ... ok -testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> - for line in open(structure_file): +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> + ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0t2b9p1k' mode='r' encoding='UTF-8'> - break +ok +testHMMSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> + ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok -testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok -testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) -@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4btk8zud' mode='r' encoding='UTF-8'> - generated = open(tmp.name).read() +testInsertionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpiydyym6w' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph65zuf1q' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok -testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok -testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplae_t1ja' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpoi6m41f8' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok -testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok -testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4d815xyu' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwsbfntje' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead - array = numpy.fromstring(map_data, numpy.float32, count) +testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpicjv__17' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpggj0dbuv' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok -testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok -testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok -testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok +testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testGaps (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testIdenticals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testIdentity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testIsEmpty (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testQend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testQstart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testQuery (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testSubject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok +testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix) ... ok +testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok +testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok testCommaSplitting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions) @see: [CSB 0000067] ... ok testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... ok @@ -1306,54 +1343,50 @@ ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser) ... ok -testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) -Test creating an empty L{Clans} instance. ... ok -testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py:375: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> - data_blocks = open(os.path.expanduser( +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead + array = numpy.fromstring(map_data, numpy.float32, count) +ok +testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok +testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok +testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok +testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok -testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok -testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) -Test parsing of a small dummy file with known values ... ok -testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) -Test whether the premature (before parsing) access to clans_instance is ... ok -testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5wckjg63' mode='r' encoding='UTF-8'> +testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2r459abn' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpccab3b3h' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpevrptcmk' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbkjxfk7p' mode='r' encoding='UTF-8'> +testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpoigfq2d5' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpilpyriqt' mode='r' encoding='UTF-8'> +testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwhi8um30' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdd_kyfiz' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpuvie3hqz' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpjz7cf70u' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdhfkujum' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1365,11 +1398,11 @@ testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_0hw8d8v' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpun3h2sz6' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0mthsiuq' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf30nvv8q' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1383,21 +1416,68 @@ testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) +Test creating an empty L{Clans} instance. ... ok +testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py:375: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> + data_blocks = open(os.path.expanduser( ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> +testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok +testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok +testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) +Test parsing of a small dummy file with known values ... ok +testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) +Test whether the premature (before parsing) access to clans_instance is ... ok +testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok +testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok +testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok +testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok +testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> + content = open(filename).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok +testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) +@see: [CSB 0000056] ... ok +testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> + for line in open(structure_file): +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpk_gn1wa0' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok +testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok +testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) +@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqz1uwspr' mode='r' encoding='UTF-8'> + generated = open(tmp.name).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) @see: [CSB 0000058] ... ok @@ -1420,6 +1500,60 @@ testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok +testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok +testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok +testGetAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok +testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok +testNegative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok +testPositive (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok +testAtomContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testCompare (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testCutoff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testPosition (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testResidueContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok +testFromAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok +testFromShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok +testFromString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok +testGetAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok +testMatch (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok +testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok +testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok +testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok +testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok +testIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok +testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok +testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testLen (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testMaxIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testMinIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testNumProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok +testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok +testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok @@ -1452,7 +1586,7 @@ testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7bjmji1i' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyt0h23_m' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1496,168 +1630,11 @@ testGetAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testTarget (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testThreshold (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok -testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> - self.a3m = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> - ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testHMMSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> - ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testInsertionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpy8_k8np_' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9v6o1u6l' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyol4pe5_' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp67cquxeb' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0rkb_3av' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnsezwfk9' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7877hroq' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpd83m52av' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testGaps (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testIdenticals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testIdentity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testIsEmpty (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testQend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testQstart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testQuery (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testSubject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok -testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix) ... ok -testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok -testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok -testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok -testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok -testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok -testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok +testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok +testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok +testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok +testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... ok testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' @@ -1676,11 +1653,6 @@ testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok -testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok -testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok -testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok -testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok -testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok @@ -1688,6 +1660,13 @@ testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' +testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testCumulative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) @@ -1700,13 +1679,6 @@ The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok -testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testCumulative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok @@ -1805,6 +1777,74 @@ testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbr0hpqn4' mode='r' encoding='UTF-8'> + content = open(self.temp.name).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testGzipFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testLock (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testLockGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testSimple (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testAllMarkers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testDel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpi_y81y55' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsewhsuw1' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'A/B/C/') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpafsfv2x1' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testFlush (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testExitCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok +testSTDERR (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok +testSTDOUT (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok +testArrayCompatibility (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpap_e_v4n' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testInsert (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testSQLDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testScalar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testSelect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testWhere (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpn7jd6rzi' mode='r' encoding='UTF-8'> + self.assertEqual(data, open(temp.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok +testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok +testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok +testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok +testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok +testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok +testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok @@ -1844,14 +1884,9 @@ testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestIterable) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestOrderedDict) ... ok -testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok -testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok -testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok -testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok -testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok ---------------------------------------------------------------------- -Ran 697 tests in 48.537s +Ran 697 tests in 72.058s OK (skipped=6) make[1]: Leaving directory '/build/reproducible-path/python-csb-1.2.5+dfsg' @@ -1884,77 +1919,176 @@ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9 creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/whatif.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/fasta.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/procheck.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/dssp.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/clans.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/hhpred.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/cs.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/noe.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/mrc.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/integrators.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/maxent.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/ars.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/rand.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/tsv.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ @@ -1963,332 +2097,233 @@ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/tsv.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/dssp.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/mrc.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/fasta.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/procheck.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/clans.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/hhpred.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/cs.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/noe.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/whatif.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/integrators.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/maxent.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/ars.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/rand.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/wham.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/wham.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/app.py to app.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/dssp.py to dssp.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/procheck.py to procheck.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/noe.py to noe.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/svg.py to svg.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/cs.py to cs.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/psipred.py to psipred.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/clans.py to clans.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/mrc.py to mrc.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/vasco.py to vasco.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/fasta.py to fasta.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/whatif.py to whatif.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/integrators.py to integrators.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/rand.py to rand.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/ars.py to ars.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/maxent.py to maxent.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/plots.py to plots.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/tsv.py to tsv.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-39.pyc -/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/tsv.py to tsv.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/plots.py to plots.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/psipred.py to psipred.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/fasta.py to fasta.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/svg.py to svg.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/procheck.py to procheck.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/mrc.py to mrc.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/dssp.py to dssp.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/whatif.py to whatif.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/clans.py to clans.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/cs.py to cs.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/noe.py to noe.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/vasco.py to vasco.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/integrators.py to integrators.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/rand.py to rand.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/ars.py to ars.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/maxent.py to maxent.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-39.pyc +/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/app.py to app.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/wham.py to wham.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/build.py to build.cpython-39.pyc /usr/lib/python3.9/dist-packages/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/dist-packages/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/dist-packages/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/embd.py to embd.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/helloworld.py to helloworld.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfite.py to bfite.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/precision.py to precision.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/promix.py to promix.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/csfrag.py to csfrag.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfit.py to bfit.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/csfrag.py to csfrag.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/promix.py to promix.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfite.py to bfite.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/embd.py to embd.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-39.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/helloworld.py to helloworld.cpython-39.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/wham.py to wham.cpython-39.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__init__.py to __init__.cpython-39.pyc running install_egg_info Copying csb.egg-info to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt @@ -2334,12 +2369,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/231357/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/231357/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3249211 and its subdirectories -I: Current time: Fri Jul 19 07:20:25 -12 2024 -I: pbuilder-time-stamp: 1721416825 +I: removing directory /srv/workspace/pbuilder/231357 and its subdirectories +I: Current time: Fri Aug 22 15:46:30 +14 2025 +I: pbuilder-time-stamp: 1755827190