Diff of the two buildlogs: -- --- b1/build.log 2022-01-10 03:05:06.884362619 +0000 +++ b2/build.log 2022-01-10 03:07:33.235806416 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Feb 11 21:26:12 -12 2023 -I: pbuilder-time-stamp: 1676193972 +I: Current time: Mon Jan 10 17:05:08 +14 2022 +I: pbuilder-time-stamp: 1641783908 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./spoa_4.0.7+ds-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.u1JDot6Y/trustedkeys.kbx': General error -gpgv: Signature made Mon Jan 18 18:40:30 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.1se4sNkJ/trustedkeys.kbx': General error +gpgv: Signature made Tue Jan 19 20:40:30 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./spoa_4.0.7+ds-1.dsc @@ -31,135 +31,169 @@ dpkg-source: info: applying shared_and_static.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2279133/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2486684/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2486684/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2486684/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='cc86dfa5e63c49c19c8f27ffbfa099d3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2279133' - PS1='# ' - PS2='> ' + INVOCATION_ID=e201d09c9a1b4437a2704a7205c6e4b3 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2486684 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.2BcjMrApn1/pbuilderrc_gixg --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.2BcjMrApn1/b1 --logfile b1/build.log spoa_4.0.7+ds-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.2BcjMrApn1/pbuilderrc_OTrN --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.2BcjMrApn1/b2 --logfile b2/build.log spoa_4.0.7+ds-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 2021 more - -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount - -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Feb 9 03:46 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 2021 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/2279133/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more + -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jan 10 17:05 sh -> bash + lrwxrwxrwx 1 root root 4 Jan 7 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/2486684/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -270,7 +304,7 @@ Get: 57 http://deb.debian.org/debian bullseye/main amd64 libcpu-features-dev amd64 0.6.0-3 [18.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libgtest-dev amd64 1.10.0.20201025-1.1 [226 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libsimde-dev all 0.7.2-4 [259 kB] -Fetched 30.1 MB in 0s (93.0 MB/s) +Fetched 30.1 MB in 1s (33.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -522,7 +556,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/spoa-4.0.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spoa_4.0.7+ds-1_source.changes +hostname: Name or service not known +I: Running cd /build/spoa-4.0.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../spoa_4.0.7+ds-1_source.changes dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 4.0.7+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -586,65 +621,6 @@ /usr/bin/cmake -E cmake_progress_start /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' -make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/depend -make[3]: Entering directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' -cd /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-4.0.7+ds /build/spoa-4.0.7+ds /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/DependInfo.cmake --color= -Dependee "/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/DependInfo.cmake" is newer than depender "/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/depend.internal". -Dependee "/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/depend.internal". -Scanning dependencies of target spoa_sse2 -make[3]: Leaving directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' -make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/build -make[3]: Entering directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' -[ 0%] Building CXX object CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -/usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -I/build/spoa-4.0.7+ds/include -I/build/spoa-4.0.7+ds/vendor/simde -I/build/spoa-4.0.7+ds/src -I/build/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -fdebug-prefix-map=/build/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -msse2 -std=c++11 -o CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp -In file included from /build/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp:3: -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:315:28: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] - 315 | std::unique_ptr<__mxxxi[]> sequence_profile_storage; - | ^ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:320:28: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] - 320 | std::unique_ptr<__mxxxi[]> M_storage; - | ^ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:328:28: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] - 328 | std::unique_ptr<__mxxxi[]> masks_storage; - | ^ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:332:28: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] - 332 | std::unique_ptr<__mxxxi[]> penalties_storage; - | ^ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function 'void spoa::SimdAlignmentEngine::Realloc(uint64_t, uint64_t, uint8_t)': -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:432:65: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] - 432 | pimpl_->sequence_profile_storage = std::unique_ptr<__mxxxi[]>(storage); - | ^ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:446:52: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] - 446 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); - | ^ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:462:52: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] - 462 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); - | ^ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:480:52: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] - 480 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); - | ^ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:491:54: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] - 491 | pimpl_->masks_storage = std::unique_ptr<__mxxxi[]>(storage); - | ^ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:501:58: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] - 501 | pimpl_->penalties_storage = std::unique_ptr<__mxxxi[]>(storage); - | ^ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function 'void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE2]': -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] - 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { - | ^~~ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here - 566 | case AlignmentSubtype::kAffine: - | ^~~~ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function 'void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE2]': -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] - 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { - | ^~~ -/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here - 566 | case AlignmentSubtype::kAffine: - | ^~~~ -make[3]: Leaving directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' -[ 0%] Built target spoa_sse2 make -f CMakeFiles/spoa_sse4.1.dir/build.make CMakeFiles/spoa_sse4.1.dir/depend make[3]: Entering directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' cd /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-4.0.7+ds /build/spoa-4.0.7+ds /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse4.1.dir/DependInfo.cmake --color= @@ -771,6 +747,65 @@ | ^~~~ make[3]: Leaving directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 0%] Built target spoa_avx2 +make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/depend +make[3]: Entering directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' +cd /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-4.0.7+ds /build/spoa-4.0.7+ds /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/DependInfo.cmake --color= +Dependee "/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/DependInfo.cmake" is newer than depender "/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/depend.internal". +Dependee "/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/depend.internal". +Scanning dependencies of target spoa_sse2 +make[3]: Leaving directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' +make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/build +make[3]: Entering directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' +[ 0%] Building CXX object CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o +/usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -I/build/spoa-4.0.7+ds/include -I/build/spoa-4.0.7+ds/vendor/simde -I/build/spoa-4.0.7+ds/src -I/build/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -fdebug-prefix-map=/build/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -msse2 -std=c++11 -o CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp +In file included from /build/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp:3: +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:315:28: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] + 315 | std::unique_ptr<__mxxxi[]> sequence_profile_storage; + | ^ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:320:28: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] + 320 | std::unique_ptr<__mxxxi[]> M_storage; + | ^ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:328:28: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] + 328 | std::unique_ptr<__mxxxi[]> masks_storage; + | ^ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:332:28: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] + 332 | std::unique_ptr<__mxxxi[]> penalties_storage; + | ^ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function 'void spoa::SimdAlignmentEngine::Realloc(uint64_t, uint64_t, uint8_t)': +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:432:65: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] + 432 | pimpl_->sequence_profile_storage = std::unique_ptr<__mxxxi[]>(storage); + | ^ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:446:52: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] + 446 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); + | ^ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:462:52: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] + 462 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); + | ^ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:480:52: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] + 480 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); + | ^ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:491:54: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] + 491 | pimpl_->masks_storage = std::unique_ptr<__mxxxi[]>(storage); + | ^ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:501:58: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m128i []'} [-Wignored-attributes] + 501 | pimpl_->penalties_storage = std::unique_ptr<__mxxxi[]>(storage); + | ^ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function 'void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE2]': +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] + 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { + | ^~~ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here + 566 | case AlignmentSubtype::kAffine: + | ^~~~ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function 'void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE2]': +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] + 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { + | ^~~ +/build/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here + 566 | case AlignmentSubtype::kAffine: + | ^~~~ +make[3]: Leaving directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' +[ 0%] Built target spoa_sse2 make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make[3]: Entering directory '/build/spoa-4.0.7+ds/obj-x86_64-linux-gnu' cd /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-4.0.7+ds /build/spoa-4.0.7+ds /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake --color= @@ -1044,49 +1079,49 @@ [----------] 20 tests from SpoaTest [ RUN ] SpoaTest.Clear -[ OK ] SpoaTest.Clear (142 ms) +[ OK ] SpoaTest.Clear (147 ms) [ RUN ] SpoaTest.Archive -[ OK ] SpoaTest.Archive (2 ms) +[ OK ] SpoaTest.Archive (4 ms) [ RUN ] SpoaTest.Local -[ OK ] SpoaTest.Local (65 ms) +[ OK ] SpoaTest.Local (71 ms) [ RUN ] SpoaTest.LocalAffine -[ OK ] SpoaTest.LocalAffine (96 ms) +[ OK ] SpoaTest.LocalAffine (106 ms) [ RUN ] SpoaTest.LocalConvex -[ OK ] SpoaTest.LocalConvex (118 ms) +[ OK ] SpoaTest.LocalConvex (132 ms) [ RUN ] SpoaTest.LocalWithQualities -[ OK ] SpoaTest.LocalWithQualities (66 ms) +[ OK ] SpoaTest.LocalWithQualities (69 ms) [ RUN ] SpoaTest.LocalAffineWithQualities -[ OK ] SpoaTest.LocalAffineWithQualities (96 ms) +[ OK ] SpoaTest.LocalAffineWithQualities (102 ms) [ RUN ] SpoaTest.LocalConvexWithQualities -[ OK ] SpoaTest.LocalConvexWithQualities (121 ms) +[ OK ] SpoaTest.LocalConvexWithQualities (129 ms) [ RUN ] SpoaTest.Global -[ OK ] SpoaTest.Global (64 ms) +[ OK ] SpoaTest.Global (68 ms) [ RUN ] SpoaTest.GlobalAffine -[ OK ] SpoaTest.GlobalAffine (93 ms) +[ OK ] SpoaTest.GlobalAffine (97 ms) [ RUN ] SpoaTest.GlobalConvex -[ OK ] SpoaTest.GlobalConvex (115 ms) +[ OK ] SpoaTest.GlobalConvex (119 ms) [ RUN ] SpoaTest.GlobalWithQualities -[ OK ] SpoaTest.GlobalWithQualities (64 ms) +[ OK ] SpoaTest.GlobalWithQualities (73 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities -[ OK ] SpoaTest.GlobalAffineWithQualities (93 ms) +[ OK ] SpoaTest.GlobalAffineWithQualities (100 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities -[ OK ] SpoaTest.GlobalConvexWithQualities (116 ms) +[ OK ] SpoaTest.GlobalConvexWithQualities (138 ms) [ RUN ] SpoaTest.SemiGlobal -[ OK ] SpoaTest.SemiGlobal (63 ms) +[ OK ] SpoaTest.SemiGlobal (64 ms) [ RUN ] SpoaTest.SemiGlobalAffine -[ OK ] SpoaTest.SemiGlobalAffine (91 ms) +[ OK ] SpoaTest.SemiGlobalAffine (94 ms) [ RUN ] SpoaTest.SemiGlobalConvex -[ OK ] SpoaTest.SemiGlobalConvex (116 ms) +[ OK ] SpoaTest.SemiGlobalConvex (120 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities -[ OK ] SpoaTest.SemiGlobalWithQualities (62 ms) +[ OK ] SpoaTest.SemiGlobalWithQualities (67 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities -[ OK ] SpoaTest.SemiGlobalAffineWithQualities (92 ms) +[ OK ] SpoaTest.SemiGlobalAffineWithQualities (99 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities -[ OK ] SpoaTest.SemiGlobalConvexWithQualities (115 ms) -[----------] 20 tests from SpoaTest (1790 ms total) +[ OK ] SpoaTest.SemiGlobalConvexWithQualities (121 ms) +[----------] 20 tests from SpoaTest (1920 ms total) [----------] Global test environment tear-down -[==========] 23 tests from 2 test suites ran. (1790 ms total) +[==========] 23 tests from 2 test suites ran. (1920 ms total) [ PASSED ] 23 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:495 @@ -1159,7 +1194,7 @@ dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libspoa7.0.0/DEBIAN/symbols doesn't match completely debian/libspoa7.0.0.symbols.amd64 --- debian/libspoa7.0.0.symbols.amd64 (libspoa7.0.0_4.0.7+ds-1_amd64) -+++ dpkg-gensymbolsvyRYmL 2023-02-11 21:28:05.049612265 -1200 ++++ dpkg-gensymbolsgU1SDI 2022-01-10 17:07:28.547728733 +1400 @@ -1,5 +1,33 @@ libspoa.so.7.0.0 libspoa7.0.0 #MINVER# * Build-Depends-Package: libspoa-dev @@ -1212,12 +1247,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2486684/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2486684/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2279133 and its subdirectories -I: Current time: Sat Feb 11 21:28:09 -12 2023 -I: pbuilder-time-stamp: 1676194089 +I: removing directory /srv/workspace/pbuilder/2486684 and its subdirectories +I: Current time: Mon Jan 10 17:07:32 +14 2022 +I: pbuilder-time-stamp: 1641784052