Diff of the two buildlogs: -- --- b1/build.log 2024-08-05 00:03:23.240370974 +0000 +++ b2/build.log 2024-08-05 00:07:21.710237268 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Aug 4 11:58:15 -12 2024 -I: pbuilder-time-stamp: 1722815895 +I: Current time: Sun Sep 7 20:26:26 +14 2025 +I: pbuilder-time-stamp: 1757226386 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./subread_2.0.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.u5oC5kdZ/trustedkeys.kbx': General error -gpgv: Signature made Fri May 22 05:56:50 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.3lYH3rTV/trustedkeys.kbx': General error +gpgv: Signature made Sat May 23 07:56:50 2020 +14 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key @@ -34,135 +34,166 @@ dpkg-source: info: applying gcc10.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1172967/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/713087/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 7 20:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/713087/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/713087/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=20 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=42 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='3bc98aa2dbb14c058f5dc8eeee6bcd9e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1172967' - PS1='# ' - PS2='> ' + INVOCATION_ID=e68fb0a08c764375ae6d6903a24bc695 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=713087 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BNHyrXZf/pbuilderrc_e6UA --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BNHyrXZf/b1 --logfile b1/build.log subread_2.0.1+dfsg-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BNHyrXZf/pbuilderrc_MUGR --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BNHyrXZf/b2 --logfile b2/build.log subread_2.0.1+dfsg-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.9.7+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1~bpo12+1 (2024-07-03) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Mar 27 22:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Mar 27 22:09 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Mar 27 22:09 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Mar 27 22:09 more - -rwsr-xr-x 1 root root 55528 Mar 27 22:09 mount - -rwxr-xr-x 1 root root 18664 Mar 27 22:09 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 6 21:26 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Mar 27 22:09 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Jan 19 2024 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Mar 27 22:09 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Mar 27 22:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1172967/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Mar 29 2024 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Mar 29 2024 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Mar 29 2024 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Mar 29 2024 more + -rwsr-xr-x 1 root root 55528 Mar 29 2024 mount + -rwxr-xr-x 1 root root 18664 Mar 29 2024 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Sep 7 20:26 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Mar 29 2024 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Jan 20 2024 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Mar 29 2024 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Mar 29 2024 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/713087/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -254,7 +285,7 @@ Get: 46 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 help2man amd64 1.48.1 [190 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] -Fetched 24.4 MB in 2s (14.1 MB/s) +Fetched 24.4 MB in 3s (7708 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) @@ -464,7 +495,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/subread-2.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../subread_2.0.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/713087/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/713087/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/subread-2.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../subread_2.0.1+dfsg-1_source.changes dpkg-buildpackage: info: source package subread dpkg-buildpackage: info: source version 2.0.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -703,7 +738,7 @@ || Repeat threshold : 100 repeats || || Gapped index : no || || || -|| Free / total memory : 70.5GB / 78.5GB || +|| Free / total memory : 68.4GB / 78.5GB || || || || Input files : 1 file in total || || o chr901.fa || @@ -719,31 +754,31 @@ || 52 uninformative subreads were found. || || These subreads were excluded from index building. || || Estimate the index size... || -|| 8%, 0 mins elapsed, rate=986.3k bps/s || -|| 16%, 0 mins elapsed, rate=1596.8k bps/s || -|| 25%, 0 mins elapsed, rate=1996.0k bps/s || -|| 33%, 0 mins elapsed, rate=2296.8k bps/s || -|| 41%, 0 mins elapsed, rate=2509.9k bps/s || -|| 50%, 0 mins elapsed, rate=2675.5k bps/s || -|| 58%, 0 mins elapsed, rate=2807.8k bps/s || -|| 66%, 0 mins elapsed, rate=2915.9k bps/s || -|| 75%, 0 mins elapsed, rate=3018.0k bps/s || -|| 83%, 0 mins elapsed, rate=3104.9k bps/s || -|| 91%, 0 mins elapsed, rate=3224.3k bps/s || -|| 100%, 0 mins elapsed, rate=3342.1k bps/s || +|| 8%, 0 mins elapsed, rate=2149.5k bps/s || +|| 16%, 0 mins elapsed, rate=3493.0k bps/s || +|| 25%, 0 mins elapsed, rate=4336.1k bps/s || +|| 33%, 0 mins elapsed, rate=5004.9k bps/s || +|| 41%, 0 mins elapsed, rate=5515.3k bps/s || +|| 50%, 0 mins elapsed, rate=5917.6k bps/s || +|| 58%, 0 mins elapsed, rate=6177.1k bps/s || +|| 66%, 0 mins elapsed, rate=6387.2k bps/s || +|| 75%, 0 mins elapsed, rate=6676.9k bps/s || +|| 83%, 0 mins elapsed, rate=6815.6k bps/s || +|| 91%, 0 mins elapsed, rate=6986.0k bps/s || +|| 100%, 0 mins elapsed, rate=7084.4k bps/s || || 1.3 GB of memory is needed for index building. || || Build the index... || -|| 8%, 0 mins elapsed, rate=99.9k bps/s || -|| 16%, 0 mins elapsed, rate=191.0k bps/s || -|| 25%, 0 mins elapsed, rate=274.3k bps/s || -|| 33%, 0 mins elapsed, rate=350.8k bps/s || -|| 41%, 0 mins elapsed, rate=420.8k bps/s || -|| 50%, 0 mins elapsed, rate=485.5k bps/s || -|| 58%, 0 mins elapsed, rate=545.9k bps/s || -|| 66%, 0 mins elapsed, rate=601.5k bps/s || -|| 75%, 0 mins elapsed, rate=653.8k bps/s || -|| 83%, 0 mins elapsed, rate=702.7k bps/s || -|| 91%, 0 mins elapsed, rate=747.9k bps/s || +|| 8%, 0 mins elapsed, rate=181.8k bps/s || +|| 16%, 0 mins elapsed, rate=346.4k bps/s || +|| 25%, 0 mins elapsed, rate=497.0k bps/s || +|| 33%, 0 mins elapsed, rate=633.9k bps/s || +|| 41%, 0 mins elapsed, rate=760.7k bps/s || +|| 50%, 0 mins elapsed, rate=876.3k bps/s || +|| 58%, 0 mins elapsed, rate=984.6k bps/s || +|| 66%, 0 mins elapsed, rate=1085.2k bps/s || +|| 75%, 0 mins elapsed, rate=1180.7k bps/s || +|| 83%, 0 mins elapsed, rate=1266.3k bps/s || +|| 91%, 0 mins elapsed, rate=1352.1k bps/s || || Save current index block... || || [ 0.0% finished ] || || [ 10.0% finished ] || @@ -790,7 +825,7 @@ || || \\============================================================================// -//=============== Running (04-Aug-2024 12:00:18, pid=1195842) ================\\ +//================ Running (07-Sep-2025 20:27:48, pid=726216) ================\\ || || || Check the input reads. || || The input file contains base space reads. || @@ -804,10 +839,10 @@ || Load the 1-th index block... || || The index block has been loaded. || || Start read mapping in chunk. || -|| 33% completed, 0.2 mins elapsed, rate=44.4k reads per second || -|| 74% completed, 0.2 mins elapsed, rate=1.0k reads per second || -|| 83% completed, 0.2 mins elapsed, rate=1.1k reads per second || -|| 91% completed, 0.3 mins elapsed, rate=1.2k reads per second || +|| 33% completed, 0.3 mins elapsed, rate=62.9k reads per second || +|| 74% completed, 0.3 mins elapsed, rate=0.8k reads per second || +|| 83% completed, 0.3 mins elapsed, rate=0.9k reads per second || +|| 91% completed, 0.3 mins elapsed, rate=1.0k reads per second || || || || Completed successfully. || || || @@ -856,7 +891,7 @@ || || \\============================================================================// -//=============== Running (04-Aug-2024 12:00:33, pid=1199656) ================\\ +//================ Running (07-Sep-2025 20:28:07, pid=727632) ================\\ || || || Check the input reads. || || The input file contains base space reads. || @@ -870,10 +905,10 @@ || Load the 1-th index block... || || The index block has been loaded. || || Start read mapping in chunk. || -|| 33% completed, 0.2 mins elapsed, rate=42.7k reads per second || -|| 74% completed, 0.2 mins elapsed, rate=1.0k reads per second || -|| 83% completed, 0.2 mins elapsed, rate=1.1k reads per second || -|| 91% completed, 0.2 mins elapsed, rate=1.2k reads per second || +|| 33% completed, 0.3 mins elapsed, rate=62.3k reads per second || +|| 74% completed, 0.3 mins elapsed, rate=0.8k reads per second || +|| 83% completed, 0.3 mins elapsed, rate=0.9k reads per second || +|| 91% completed, 0.3 mins elapsed, rate=1.0k reads per second || || || || Completed successfully. || || || @@ -927,7 +962,7 @@ || || \\============================================================================// -//=============== Running (04-Aug-2024 12:00:49, pid=1201606) ================\\ +//================ Running (07-Sep-2025 20:28:26, pid=730050) ================\\ || || || Check the input reads. || || The input file contains base space reads. || @@ -941,11 +976,11 @@ || Load the 1-th index block... || || The index block has been loaded. || || Start read mapping in chunk. || -|| 33% completed, 0.2 mins elapsed, rate=21.4k fragments per second || +|| 33% completed, 0.3 mins elapsed, rate=28.6k fragments per second || || Estimated fragment length : 495 bp || -|| 74% completed, 0.3 mins elapsed, rate=1.0k fragments per second || -|| 83% completed, 0.3 mins elapsed, rate=1.1k fragments per second || -|| 91% completed, 0.3 mins elapsed, rate=1.2k fragments per second || +|| 74% completed, 0.3 mins elapsed, rate=0.8k fragments per second || +|| 83% completed, 0.3 mins elapsed, rate=0.9k fragments per second || +|| 91% completed, 0.3 mins elapsed, rate=1.0k fragments per second || || || || Completed successfully. || || || @@ -1007,7 +1042,7 @@ || || \\============================================================================// -//=============== Running (04-Aug-2024 12:01:05, pid=1204045) ================\\ +//================ Running (07-Sep-2025 20:28:45, pid=732455) ================\\ || || || Check the input reads. || || The input file contains base space reads. || @@ -1021,11 +1056,11 @@ || Load the 1-th index block... || || The index block has been loaded. || || Start read mapping in chunk. || -|| 33% completed, 0.2 mins elapsed, rate=21.9k fragments per second || +|| 33% completed, 0.3 mins elapsed, rate=29.0k fragments per second || || Estimated fragment length : 495 bp || -|| 74% completed, 0.2 mins elapsed, rate=1.0k fragments per second || -|| 83% completed, 0.3 mins elapsed, rate=1.1k fragments per second || -|| 91% completed, 0.3 mins elapsed, rate=1.2k fragments per second || +|| 74% completed, 0.3 mins elapsed, rate=0.8k fragments per second || +|| 83% completed, 0.3 mins elapsed, rate=0.9k fragments per second || +|| 91% completed, 0.3 mins elapsed, rate=1.0k fragments per second || || || || Completed successfully. || || || @@ -1087,7 +1122,7 @@ || || \\============================================================================// -//=============== Running (04-Aug-2024 12:01:21, pid=1206264) ================\\ +//================ Running (07-Sep-2025 20:29:05, pid=733385) ================\\ || || || Check the input reads. || || The input file contains base space reads. || @@ -1101,11 +1136,11 @@ || Load the 1-th index block... || || The index block has been loaded. || || Start read mapping in chunk. || -|| 33% completed, 0.2 mins elapsed, rate=22.8k fragments per second || +|| 33% completed, 0.3 mins elapsed, rate=32.1k fragments per second || || Estimated fragment length : 497 bp || -|| 74% completed, 0.2 mins elapsed, rate=1.0k fragments per second || -|| 83% completed, 0.2 mins elapsed, rate=1.1k fragments per second || -|| 91% completed, 0.3 mins elapsed, rate=1.2k fragments per second || +|| 74% completed, 0.3 mins elapsed, rate=0.8k fragments per second || +|| 83% completed, 0.3 mins elapsed, rate=0.9k fragments per second || +|| 91% completed, 0.3 mins elapsed, rate=0.9k fragments per second || || || || Completed successfully. || || || @@ -1168,7 +1203,7 @@ || || \\============================================================================// -//=============== Running (04-Aug-2024 12:01:37, pid=1209192) ================\\ +//================ Running (07-Sep-2025 20:29:24, pid=734864) ================\\ || || ERROR: unable to open file 'data/test-err-mut-r1.fq.gz'. File name might be incorrect, or you do not have the permission to read the file. ERROR: unable to open file 'data/test-err-mut-r2.fq.gz'. File name might be incorrect, or you do not have the permission to read the file. @@ -1238,7 +1273,7 @@ || Repeat threshold : 100 repeats || || Gapped index : yes || || || -|| Free / total memory : 70.6GB / 78.5GB || +|| Free / total memory : 68.3GB / 78.5GB || || || || Input files : 1 file in total || || o chr901.fa || @@ -1254,31 +1289,31 @@ || 2 uninformative subreads were found. || || These subreads were excluded from index building. || || Estimate the index size... || -|| 8%, 0 mins elapsed, rate=6986.0k bps/s || -|| 16%, 0 mins elapsed, rate=8824.4k bps/s || -|| 25%, 0 mins elapsed, rate=9672.9k bps/s || -|| 33%, 0 mins elapsed, rate=10161.5k bps/s || -|| 41%, 0 mins elapsed, rate=10479.0k bps/s || -|| 50%, 0 mins elapsed, rate=10701.9k bps/s || -|| 58%, 0 mins elapsed, rate=10867.1k bps/s || -|| 66%, 0 mins elapsed, rate=10994.3k bps/s || -|| 75%, 0 mins elapsed, rate=11095.4k bps/s || -|| 83%, 0 mins elapsed, rate=11328.6k bps/s || -|| 91%, 0 mins elapsed, rate=11384.6k bps/s || -|| 100%, 0 mins elapsed, rate=11303.2k bps/s || +|| 8%, 0 mins elapsed, rate=11976.1k bps/s || +|| 16%, 0 mins elapsed, rate=16766.4k bps/s || +|| 25%, 0 mins elapsed, rate=17963.8k bps/s || +|| 33%, 0 mins elapsed, rate=19724.9k bps/s || +|| 41%, 0 mins elapsed, rate=20958.0k bps/s || +|| 50%, 0 mins elapsed, rate=21869.2k bps/s || +|| 58%, 0 mins elapsed, rate=21734.1k bps/s || +|| 66%, 0 mins elapsed, rate=21634.0k bps/s || +|| 75%, 0 mins elapsed, rate=22190.7k bps/s || +|| 83%, 0 mins elapsed, rate=22061.0k bps/s || +|| 91%, 0 mins elapsed, rate=21956.0k bps/s || +|| 100%, 0 mins elapsed, rate=21869.2k bps/s || || 0.6 GB of memory is needed for index building. || || Build the index... || -|| 8%, 0 mins elapsed, rate=762.1k bps/s || -|| 16%, 0 mins elapsed, rate=1341.3k bps/s || -|| 25%, 0 mins elapsed, rate=1809.3k bps/s || -|| 33%, 0 mins elapsed, rate=2177.5k bps/s || -|| 41%, 0 mins elapsed, rate=2495.0k bps/s || -|| 50%, 0 mins elapsed, rate=2763.7k bps/s || -|| 58%, 0 mins elapsed, rate=2978.8k bps/s || -|| 66%, 0 mins elapsed, rate=3178.5k bps/s || -|| 75%, 0 mins elapsed, rate=3368.3k bps/s || -|| 83%, 0 mins elapsed, rate=3537.2k bps/s || -|| 91%, 0 mins elapsed, rate=3688.6k bps/s || +|| 8%, 0 mins elapsed, rate=1270.2k bps/s || +|| 16%, 0 mins elapsed, rate=2265.7k bps/s || +|| 25%, 0 mins elapsed, rate=3067.0k bps/s || +|| 33%, 0 mins elapsed, rate=3725.9k bps/s || +|| 41%, 0 mins elapsed, rate=4277.1k bps/s || +|| 50%, 0 mins elapsed, rate=4745.2k bps/s || +|| 58%, 0 mins elapsed, rate=5193.1k bps/s || +|| 66%, 0 mins elapsed, rate=5542.6k bps/s || +|| 75%, 0 mins elapsed, rate=5894.4k bps/s || +|| 83%, 0 mins elapsed, rate=6164.1k bps/s || +|| 91%, 0 mins elapsed, rate=6448.6k bps/s || || Save current index block... || || [ 0.0% finished ] || || [ 10.0% finished ] || @@ -1330,7 +1365,7 @@ || || \\============================================================================// -//=============== Running (04-Aug-2024 12:01:39, pid=1209348) ================\\ +//================ Running (07-Sep-2025 20:29:27, pid=734891) ================\\ || || || Check the input reads. || || The input file contains base space reads. || @@ -1344,11 +1379,11 @@ || Load the 1-th index block... || || The index block has been loaded. || || Start read mapping in chunk. || -|| 41% completed, 0.0 mins elapsed, rate=11.5k fragments per second || +|| 41% completed, 0.0 mins elapsed, rate=16.7k fragments per second || || Estimated fragment length : 173 bp || -|| 77% completed, 0.1 mins elapsed, rate=3.4k fragments per second || -|| 87% completed, 0.1 mins elapsed, rate=3.7k fragments per second || -|| 97% completed, 0.1 mins elapsed, rate=3.9k fragments per second || +|| 77% completed, 0.1 mins elapsed, rate=3.7k fragments per second || +|| 87% completed, 0.1 mins elapsed, rate=4.1k fragments per second || +|| 97% completed, 0.1 mins elapsed, rate=4.2k fragments per second || || || || Completed successfully. || || || @@ -1411,7 +1446,7 @@ || || \\============================================================================// -//=============== Running (04-Aug-2024 12:01:43, pid=1210550) ================\\ +//================ Running (07-Sep-2025 20:29:31, pid=734905) ================\\ || || || Check the input reads. || || The input file contains base space reads. || @@ -1425,11 +1460,11 @@ || Load the 1-th index block... || || The index block has been loaded. || || Start read mapping in chunk. || -|| 41% completed, 0.1 mins elapsed, rate=5.9k fragments per second || +|| 41% completed, 0.1 mins elapsed, rate=9.4k fragments per second || || Estimated fragment length : 174 bp || -|| 77% completed, 0.1 mins elapsed, rate=2.9k fragments per second || -|| 87% completed, 0.1 mins elapsed, rate=3.0k fragments per second || -|| 97% completed, 0.1 mins elapsed, rate=3.1k fragments per second || +|| 77% completed, 0.1 mins elapsed, rate=3.3k fragments per second || +|| 87% completed, 0.1 mins elapsed, rate=3.6k fragments per second || +|| 97% completed, 0.1 mins elapsed, rate=3.8k fragments per second || || || || Completed successfully. || || || @@ -1624,9 +1659,9 @@ || || \\============================================================================// -//====================== Running (04-Aug-2024 12:01:50) ======================\\ +//====================== Running (07-Sep-2025 20:29:36) ======================\\ || || -|| Split BAM file into result/temp-snps-1211716-6F9B447D3E20-* ... || +|| Split BAM file into result/temp-snps-735543-050E72C4AEA2-* ... || || processed block chr901@999950 by thread 1/1 [block number=1/1] || || || || Completed successfully. || @@ -1721,8 +1756,8 @@ install -d debian/subread-data/usr/share/doc/subread-data install -p -m0644 debian/copyright debian/subread-data/usr/share/doc/subread-data/copyright dh_installchangelogs - install -p -m0644 debian/changelog debian/subread/usr/share/doc/subread/changelog.Debian install -p -m0644 debian/changelog debian/subread-data/usr/share/doc/subread-data/changelog.Debian + install -p -m0644 debian/changelog debian/subread/usr/share/doc/subread/changelog.Debian rm -f debian/subread-data.debhelper.log debian/subread.debhelper.log debian/rules override_dh_installexamples-indep make[1]: Entering directory '/build/reproducible-path/subread-2.0.1+dfsg' @@ -1734,47 +1769,47 @@ make[1]: Leaving directory '/build/reproducible-path/subread-2.0.1+dfsg' dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/exactSNP.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/featureCounts.1 man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/flattenGTF.1 man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/genRandomReads.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/featureCounts.1 man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/propmapped.1 man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/qualityScores.1 man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/removeDup.1 man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/repair.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/subjunc.1 man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/subindel.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/subread-align.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/subjunc.1 man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/sublong.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/subread-align.1 man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/subread-buildindex.1 man-recode --to-code UTF-8 --suffix .dh-new debian/subread/usr/share/man/man1/subread-fullscan.1 + mv debian/subread/usr/share/man/man1/featureCounts.1.dh-new debian/subread/usr/share/man/man1/featureCounts.1 + chmod 0644 -- debian/subread/usr/share/man/man1/featureCounts.1 + mv debian/subread/usr/share/man/man1/exactSNP.1.dh-new debian/subread/usr/share/man/man1/exactSNP.1 + chmod 0644 -- debian/subread/usr/share/man/man1/exactSNP.1 + mv debian/subread/usr/share/man/man1/flattenGTF.1.dh-new debian/subread/usr/share/man/man1/flattenGTF.1 + chmod 0644 -- debian/subread/usr/share/man/man1/flattenGTF.1 + mv debian/subread/usr/share/man/man1/genRandomReads.1.dh-new debian/subread/usr/share/man/man1/genRandomReads.1 + chmod 0644 -- debian/subread/usr/share/man/man1/genRandomReads.1 mv debian/subread/usr/share/man/man1/qualityScores.1.dh-new debian/subread/usr/share/man/man1/qualityScores.1 chmod 0644 -- debian/subread/usr/share/man/man1/qualityScores.1 mv debian/subread/usr/share/man/man1/propmapped.1.dh-new debian/subread/usr/share/man/man1/propmapped.1 chmod 0644 -- debian/subread/usr/share/man/man1/propmapped.1 - mv debian/subread/usr/share/man/man1/subjunc.1.dh-new debian/subread/usr/share/man/man1/subjunc.1 - chmod 0644 -- debian/subread/usr/share/man/man1/subjunc.1 - mv debian/subread/usr/share/man/man1/genRandomReads.1.dh-new debian/subread/usr/share/man/man1/genRandomReads.1 - chmod 0644 -- debian/subread/usr/share/man/man1/genRandomReads.1 - mv debian/subread/usr/share/man/man1/featureCounts.1.dh-new debian/subread/usr/share/man/man1/featureCounts.1 - chmod 0644 -- debian/subread/usr/share/man/man1/featureCounts.1 mv debian/subread/usr/share/man/man1/removeDup.1.dh-new debian/subread/usr/share/man/man1/removeDup.1 chmod 0644 -- debian/subread/usr/share/man/man1/removeDup.1 - mv debian/subread/usr/share/man/man1/subread-align.1.dh-new debian/subread/usr/share/man/man1/subread-align.1 - chmod 0644 -- debian/subread/usr/share/man/man1/subread-align.1 - mv debian/subread/usr/share/man/man1/subread-buildindex.1.dh-new debian/subread/usr/share/man/man1/subread-buildindex.1 - chmod 0644 -- debian/subread/usr/share/man/man1/subread-buildindex.1 - mv debian/subread/usr/share/man/man1/exactSNP.1.dh-new debian/subread/usr/share/man/man1/exactSNP.1 - chmod 0644 -- debian/subread/usr/share/man/man1/exactSNP.1 mv debian/subread/usr/share/man/man1/repair.1.dh-new debian/subread/usr/share/man/man1/repair.1 chmod 0644 -- debian/subread/usr/share/man/man1/repair.1 - mv debian/subread/usr/share/man/man1/subread-fullscan.1.dh-new debian/subread/usr/share/man/man1/subread-fullscan.1 - chmod 0644 -- debian/subread/usr/share/man/man1/subread-fullscan.1 mv debian/subread/usr/share/man/man1/subindel.1.dh-new debian/subread/usr/share/man/man1/subindel.1 chmod 0644 -- debian/subread/usr/share/man/man1/subindel.1 - mv debian/subread/usr/share/man/man1/flattenGTF.1.dh-new debian/subread/usr/share/man/man1/flattenGTF.1 - chmod 0644 -- debian/subread/usr/share/man/man1/flattenGTF.1 + mv debian/subread/usr/share/man/man1/subjunc.1.dh-new debian/subread/usr/share/man/man1/subjunc.1 + chmod 0644 -- debian/subread/usr/share/man/man1/subjunc.1 mv debian/subread/usr/share/man/man1/sublong.1.dh-new debian/subread/usr/share/man/man1/sublong.1 chmod 0644 -- debian/subread/usr/share/man/man1/sublong.1 + mv debian/subread/usr/share/man/man1/subread-buildindex.1.dh-new debian/subread/usr/share/man/man1/subread-buildindex.1 + chmod 0644 -- debian/subread/usr/share/man/man1/subread-buildindex.1 + mv debian/subread/usr/share/man/man1/subread-align.1.dh-new debian/subread/usr/share/man/man1/subread-align.1 + chmod 0644 -- debian/subread/usr/share/man/man1/subread-align.1 + mv debian/subread/usr/share/man/man1/subread-fullscan.1.dh-new debian/subread/usr/share/man/man1/subread-fullscan.1 + chmod 0644 -- debian/subread/usr/share/man/man1/subread-fullscan.1 dh_perl dh_link dh_strip_nondeterminism @@ -1782,20 +1817,20 @@ cd debian/subread cd debian/subread-data chmod a-x usr/share/doc/subread/README.txt usr/share/doc/subread/changelog.Debian usr/share/man/man1/exactSNP.1 usr/share/man/man1/featureCounts.1 usr/share/man/man1/flattenGTF.1 usr/share/man/man1/genRandomReads.1 usr/share/man/man1/propmapped.1 usr/share/man/man1/qualityScores.1 usr/share/man/man1/removeDup.1 usr/share/man/man1/repair.1 usr/share/man/man1/subindel.1 usr/share/man/man1/subjunc.1 usr/share/man/man1/sublong.1 usr/share/man/man1/subread-align.1 usr/share/man/man1/subread-buildindex.1 usr/share/man/man1/subread-fullscan.1 - gzip -9nf usr/share/doc/subread/README.txt usr/share/doc/subread/changelog.Debian usr/share/man/man1/exactSNP.1 usr/share/man/man1/featureCounts.1 usr/share/man/man1/flattenGTF.1 usr/share/man/man1/genRandomReads.1 usr/share/man/man1/propmapped.1 usr/share/man/man1/qualityScores.1 usr/share/man/man1/removeDup.1 usr/share/man/man1/repair.1 usr/share/man/man1/subindel.1 usr/share/man/man1/subjunc.1 usr/share/man/man1/sublong.1 usr/share/man/man1/subread-align.1 usr/share/man/man1/subread-buildindex.1 usr/share/man/man1/subread-fullscan.1 chmod a-x usr/share/doc/subread-data/changelog.Debian usr/share/doc/subread/examples/annotation/hg19_RefSeq_exon.txt usr/share/doc/subread/examples/annotation/hg38_RefSeq_exon.txt usr/share/doc/subread/examples/annotation/mm10_RefSeq_exon.txt usr/share/doc/subread/examples/annotation/mm9_RefSeq_exon.txt + gzip -9nf usr/share/doc/subread/README.txt usr/share/doc/subread/changelog.Debian usr/share/man/man1/exactSNP.1 usr/share/man/man1/featureCounts.1 usr/share/man/man1/flattenGTF.1 usr/share/man/man1/genRandomReads.1 usr/share/man/man1/propmapped.1 usr/share/man/man1/qualityScores.1 usr/share/man/man1/removeDup.1 usr/share/man/man1/repair.1 usr/share/man/man1/subindel.1 usr/share/man/man1/subjunc.1 usr/share/man/man1/sublong.1 usr/share/man/man1/subread-align.1 usr/share/man/man1/subread-buildindex.1 usr/share/man/man1/subread-fullscan.1 gzip -9nf usr/share/doc/subread-data/changelog.Debian usr/share/doc/subread/examples/annotation/hg19_RefSeq_exon.txt usr/share/doc/subread/examples/annotation/hg38_RefSeq_exon.txt usr/share/doc/subread/examples/annotation/mm10_RefSeq_exon.txt usr/share/doc/subread/examples/annotation/mm9_RefSeq_exon.txt cd '/build/reproducible-path/subread-2.0.1+dfsg' cd '/build/reproducible-path/subread-2.0.1+dfsg' dh_fixperms - find debian/subread-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/subread ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/subread-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/subread/usr/share/doc -type f -a -true -a ! -regex 'debian/subread/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/subread-data/usr/share/doc -type f -a -true -a ! -regex 'debian/subread-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/subread/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/subread-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/subread-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/subread/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/subread-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/subread -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/subread/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/subread/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w @@ -1805,56 +1840,21 @@ dwz -mdebian/subread/usr/lib/debug/.dwz/x86_64-linux-gnu/subread.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/subread.debug -- debian/subread/usr/bin/exactSNP debian/subread/usr/bin/featureCounts debian/subread/usr/bin/subindel debian/subread/usr/bin/subjunc debian/subread/usr/bin/sublong debian/subread/usr/bin/subread-align debian/subread/usr/bin/subread-buildindex debian/subread/usr/lib/subread/flattenGTF debian/subread/usr/lib/subread/genRandomReads debian/subread/usr/lib/subread/propmapped debian/subread/usr/lib/subread/qualityScores debian/subread/usr/lib/subread/removeDup debian/subread/usr/lib/subread/repair debian/subread/usr/lib/subread/subread-fullscan debian/subread/usr/lib/subread/txUnique objcopy --compress-debug-sections debian/subread/usr/lib/debug/.dwz/x86_64-linux-gnu/subread.debug dh_strip - install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/75 - objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/subindel debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/75/09a2c2be0f9b1133b7d4ed765673d11cf1efb7.debug - chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/75/09a2c2be0f9b1133b7d4ed765673d11cf1efb7.debug - strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/subindel - objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/75/09a2c2be0f9b1133b7d4ed765673d11cf1efb7.debug debian/subread/usr/bin/subindel - install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/51 - objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/exactSNP debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/51/7f1f53948438e89c002df4306dc193c581058a.debug - chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/51/7f1f53948438e89c002df4306dc193c581058a.debug - strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/exactSNP - objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/51/7f1f53948438e89c002df4306dc193c581058a.debug debian/subread/usr/bin/exactSNP - install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/37 - objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/subread-buildindex debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/37/44fb65573fa9eda8a351033c8428b60317632b.debug - chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/37/44fb65573fa9eda8a351033c8428b60317632b.debug - strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/subread-buildindex - objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/37/44fb65573fa9eda8a351033c8428b60317632b.debug debian/subread/usr/bin/subread-buildindex - install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/71 - objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/subjunc debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/71/e7fb4dbb2ac9b9dba013d8b9d15eca5cd82767.debug - chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/71/e7fb4dbb2ac9b9dba013d8b9d15eca5cd82767.debug - strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/subjunc - objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/71/e7fb4dbb2ac9b9dba013d8b9d15eca5cd82767.debug debian/subread/usr/bin/subjunc - install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/49 - objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/subread-align debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/49/541d77a4355568d7b7da97eb5f2b78c240dffa.debug - chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/49/541d77a4355568d7b7da97eb5f2b78c240dffa.debug - strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/subread-align - objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/49/541d77a4355568d7b7da97eb5f2b78c240dffa.debug debian/subread/usr/bin/subread-align - install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/9e - objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/sublong debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/9e/35d7ceeb0aa672d20a0627dc8d5e43e08083fb.debug - chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/9e/35d7ceeb0aa672d20a0627dc8d5e43e08083fb.debug - strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/sublong - objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/9e/35d7ceeb0aa672d20a0627dc8d5e43e08083fb.debug debian/subread/usr/bin/sublong - install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/fe - objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/featureCounts debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/fe/81fc6de8529a1d19130006201202dc2236d270.debug - chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/fe/81fc6de8529a1d19130006201202dc2236d270.debug - strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/featureCounts - objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/fe/81fc6de8529a1d19130006201202dc2236d270.debug debian/subread/usr/bin/featureCounts - install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/43 - objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/lib/subread/propmapped debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/43/9566eb45fa1c152a011cef4a2d2e5db182a742.debug - chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/43/9566eb45fa1c152a011cef4a2d2e5db182a742.debug - strip --remove-section=.comment --remove-section=.note debian/subread/usr/lib/subread/propmapped - objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/43/9566eb45fa1c152a011cef4a2d2e5db182a742.debug debian/subread/usr/lib/subread/propmapped - install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/ac - objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/lib/subread/qualityScores debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/ac/b8968bf1eabf4a514e680fa1f136cdda133972.debug - chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/ac/b8968bf1eabf4a514e680fa1f136cdda133972.debug - strip --remove-section=.comment --remove-section=.note debian/subread/usr/lib/subread/qualityScores - objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/ac/b8968bf1eabf4a514e680fa1f136cdda133972.debug debian/subread/usr/lib/subread/qualityScores install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/07 objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/lib/subread/subread-fullscan debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/07/3b2cf961f79efd03c6055e6d58a33329a86ce5.debug chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/07/3b2cf961f79efd03c6055e6d58a33329a86ce5.debug strip --remove-section=.comment --remove-section=.note debian/subread/usr/lib/subread/subread-fullscan objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/07/3b2cf961f79efd03c6055e6d58a33329a86ce5.debug debian/subread/usr/lib/subread/subread-fullscan + install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/ac + objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/lib/subread/qualityScores debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/ac/b8968bf1eabf4a514e680fa1f136cdda133972.debug + chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/ac/b8968bf1eabf4a514e680fa1f136cdda133972.debug + strip --remove-section=.comment --remove-section=.note debian/subread/usr/lib/subread/qualityScores + objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/ac/b8968bf1eabf4a514e680fa1f136cdda133972.debug debian/subread/usr/lib/subread/qualityScores + install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/43 + objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/lib/subread/propmapped debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/43/9566eb45fa1c152a011cef4a2d2e5db182a742.debug + chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/43/9566eb45fa1c152a011cef4a2d2e5db182a742.debug + strip --remove-section=.comment --remove-section=.note debian/subread/usr/lib/subread/propmapped + objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/43/9566eb45fa1c152a011cef4a2d2e5db182a742.debug debian/subread/usr/lib/subread/propmapped install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/06 objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/lib/subread/flattenGTF debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/06/a27851a3b9733d3061e6fa8838bbec586c497e.debug chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/06/a27851a3b9733d3061e6fa8838bbec586c497e.debug @@ -1870,16 +1870,51 @@ chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/aa/31a960e91cb049c9f7d194fc389f5916797eff.debug strip --remove-section=.comment --remove-section=.note debian/subread/usr/lib/subread/txUnique objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/aa/31a960e91cb049c9f7d194fc389f5916797eff.debug debian/subread/usr/lib/subread/txUnique - install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/84 - objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/lib/subread/removeDup debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/84/35076b46dd29c40fce8d05d4c8814c92f17f89.debug - chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/84/35076b46dd29c40fce8d05d4c8814c92f17f89.debug - strip --remove-section=.comment --remove-section=.note debian/subread/usr/lib/subread/removeDup - objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/84/35076b46dd29c40fce8d05d4c8814c92f17f89.debug debian/subread/usr/lib/subread/removeDup install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/lib/subread/genRandomReads debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/91/6d15732d12868435deb48077a6ab3cee3081f5.debug chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/91/6d15732d12868435deb48077a6ab3cee3081f5.debug strip --remove-section=.comment --remove-section=.note debian/subread/usr/lib/subread/genRandomReads objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/91/6d15732d12868435deb48077a6ab3cee3081f5.debug debian/subread/usr/lib/subread/genRandomReads + install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/84 + objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/lib/subread/removeDup debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/84/35076b46dd29c40fce8d05d4c8814c92f17f89.debug + chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/84/35076b46dd29c40fce8d05d4c8814c92f17f89.debug + strip --remove-section=.comment --remove-section=.note debian/subread/usr/lib/subread/removeDup + objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/84/35076b46dd29c40fce8d05d4c8814c92f17f89.debug debian/subread/usr/lib/subread/removeDup + install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/37 + objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/subread-buildindex debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/37/44fb65573fa9eda8a351033c8428b60317632b.debug + chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/37/44fb65573fa9eda8a351033c8428b60317632b.debug + strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/subread-buildindex + objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/37/44fb65573fa9eda8a351033c8428b60317632b.debug debian/subread/usr/bin/subread-buildindex + install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/49 + objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/subread-align debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/49/541d77a4355568d7b7da97eb5f2b78c240dffa.debug + chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/49/541d77a4355568d7b7da97eb5f2b78c240dffa.debug + strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/subread-align + objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/49/541d77a4355568d7b7da97eb5f2b78c240dffa.debug debian/subread/usr/bin/subread-align + install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/fe + objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/featureCounts debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/fe/81fc6de8529a1d19130006201202dc2236d270.debug + chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/fe/81fc6de8529a1d19130006201202dc2236d270.debug + strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/featureCounts + objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/fe/81fc6de8529a1d19130006201202dc2236d270.debug debian/subread/usr/bin/featureCounts + install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/75 + objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/subindel debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/75/09a2c2be0f9b1133b7d4ed765673d11cf1efb7.debug + chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/75/09a2c2be0f9b1133b7d4ed765673d11cf1efb7.debug + strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/subindel + objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/75/09a2c2be0f9b1133b7d4ed765673d11cf1efb7.debug debian/subread/usr/bin/subindel + install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/71 + objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/subjunc debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/71/e7fb4dbb2ac9b9dba013d8b9d15eca5cd82767.debug + chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/71/e7fb4dbb2ac9b9dba013d8b9d15eca5cd82767.debug + strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/subjunc + objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/71/e7fb4dbb2ac9b9dba013d8b9d15eca5cd82767.debug debian/subread/usr/bin/subjunc + install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/51 + objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/exactSNP debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/51/7f1f53948438e89c002df4306dc193c581058a.debug + chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/51/7f1f53948438e89c002df4306dc193c581058a.debug + strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/exactSNP + objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/51/7f1f53948438e89c002df4306dc193c581058a.debug debian/subread/usr/bin/exactSNP + install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/9e + objcopy --only-keep-debug --compress-debug-sections debian/subread/usr/bin/sublong debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/9e/35d7ceeb0aa672d20a0627dc8d5e43e08083fb.debug + chmod 0644 -- debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/9e/35d7ceeb0aa672d20a0627dc8d5e43e08083fb.debug + strip --remove-section=.comment --remove-section=.note debian/subread/usr/bin/sublong + objcopy --add-gnu-debuglink debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.build-id/9e/35d7ceeb0aa672d20a0627dc8d5e43e08083fb.debug debian/subread/usr/bin/sublong install -d debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/subread/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/subread/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/subread/usr/lib/debug/.dwz @@ -1891,7 +1926,7 @@ rm -f debian/subread-data/DEBIAN/shlibs dh_shlibdeps install -d debian/subread/DEBIAN - dpkg-shlibdeps -Tdebian/subread.substvars debian/subread/usr/bin/subindel debian/subread/usr/bin/exactSNP debian/subread/usr/bin/subread-buildindex debian/subread/usr/bin/subjunc debian/subread/usr/bin/subread-align debian/subread/usr/bin/sublong debian/subread/usr/bin/featureCounts debian/subread/usr/lib/subread/propmapped debian/subread/usr/lib/subread/qualityScores debian/subread/usr/lib/subread/subread-fullscan debian/subread/usr/lib/subread/flattenGTF debian/subread/usr/lib/subread/repair debian/subread/usr/lib/subread/txUnique debian/subread/usr/lib/subread/removeDup debian/subread/usr/lib/subread/genRandomReads + dpkg-shlibdeps -Tdebian/subread.substvars debian/subread/usr/lib/subread/subread-fullscan debian/subread/usr/lib/subread/qualityScores debian/subread/usr/lib/subread/propmapped debian/subread/usr/lib/subread/flattenGTF debian/subread/usr/lib/subread/repair debian/subread/usr/lib/subread/txUnique debian/subread/usr/lib/subread/genRandomReads debian/subread/usr/lib/subread/removeDup debian/subread/usr/bin/subread-buildindex debian/subread/usr/bin/subread-align debian/subread/usr/bin/featureCounts debian/subread/usr/bin/subindel debian/subread/usr/bin/subjunc debian/subread/usr/bin/exactSNP debian/subread/usr/bin/sublong dh_installdeb install -d debian/subread-data/DEBIAN dh_gencontrol @@ -1908,8 +1943,8 @@ dpkg-gencontrol -psubread -ldebian/changelog -Tdebian/subread.substvars -Pdebian/subread chmod 0644 -- debian/subread/DEBIAN/control dh_md5sums - cd debian/subread-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/subread >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/subread-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/subread/DEBIAN/md5sums cd debian/.debhelper/subread/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/subread-data/DEBIAN/md5sums @@ -1917,8 +1952,8 @@ dh_builddeb dpkg-deb --root-owner-group --build debian/subread .. dpkg-deb --root-owner-group --build debian/.debhelper/subread/dbgsym-root .. -dpkg-deb: building package 'subread' in '../subread_2.0.1+dfsg-1_amd64.deb'. dpkg-deb --root-owner-group --build debian/subread-data .. +dpkg-deb: building package 'subread' in '../subread_2.0.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'subread-dbgsym' in '../subread-dbgsym_2.0.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'subread-data' in '../subread-data_2.0.1+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary @@ -1928,12 +1963,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/713087/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/713087/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1172967 and its subdirectories -I: Current time: Sun Aug 4 12:03:22 -12 2024 -I: pbuilder-time-stamp: 1722816202 +I: removing directory /srv/workspace/pbuilder/713087 and its subdirectories +I: Current time: Sun Sep 7 20:30:21 +14 2025 +I: pbuilder-time-stamp: 1757226621