Diff of the two buildlogs: -- --- b1/build.log 2024-01-06 19:30:17.954447521 +0000 +++ b2/build.log 2024-01-06 19:53:42.068452716 +0000 @@ -1,7 +1,7 @@ W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 7 13:16:34 -12 2025 -I: pbuilder-time-stamp: 1738977394 +I: Current time: Sun Jan 7 09:30:21 +14 2024 +I: pbuilder-time-stamp: 1704569421 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: copying [./apbs_3.0.0+dfsg1-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.QAuAKtxe/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.8TQA4mq4/trustedkeys.kbx': General error gpgv: Signature made Thu Jul 23 10:20:29 2020 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key @@ -36,48 +36,79 @@ dpkg-source: info: applying link_libapbs_routines.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1058048/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4131060/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 6 19:30 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4131060/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4131060/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1058048' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4131060 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Pgo0yWXT/pbuilderrc_9wpu --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Pgo0yWXT/b1 --logfile b1/build.log apbs_3.0.0+dfsg1-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://192.168.101.104:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Pgo0yWXT/pbuilderrc_LvxA --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Pgo0yWXT/b2 --logfile b2/build.log apbs_3.0.0+dfsg1-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.104:3128 I: uname -a - Linux codethink03-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Mar 27 2022 bash @@ -137,7 +168,7 @@ -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 8 15:47 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 6 19:30 sh -> /bin/bash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jan 20 2022 su @@ -163,7 +194,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/1058048/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/4131060/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -347,7 +378,7 @@ Get: 128 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Get: 129 http://deb.debian.org/debian bullseye/main arm64 swig4.0 arm64 4.0.2-1 [1295 kB] Get: 130 http://deb.debian.org/debian bullseye/main arm64 swig all 4.0.2-1 [330 kB] -Fetched 62.4 MB in 1s (111 MB/s) +Fetched 62.4 MB in 1s (109 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17734 files and directories currently installed.) @@ -767,8 +798,8 @@ Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Feb 8 01:16:58 UTC 2025. -Universal Time is now: Sat Feb 8 01:16:58 UTC 2025. +Local time is now: Sat Jan 6 19:30:48 UTC 2024. +Universal Time is now: Sat Jan 6 19:30:48 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1+nmu1) ... @@ -899,7 +930,11 @@ fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/apbs-3.0.0+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../apbs_3.0.0+dfsg1-3_source.changes +I: user script /srv/workspace/pbuilder/4131060/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/4131060/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/apbs-3.0.0+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../apbs_3.0.0+dfsg1-3_source.changes dpkg-buildpackage: info: source package apbs dpkg-buildpackage: info: source version 3.0.0+dfsg1-3 dpkg-buildpackage: info: source distribution unstable @@ -1050,110 +1085,110 @@ make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend -make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend -make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/python /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= +make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". +make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/python /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". -Scanning dependencies of target apbslib_swig_compilation +Scanning dependencies of target apbs_pmgc make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build +make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". +[ 1%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildAd.c +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Scanning dependencies of target apbs_generic +[ 2%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildBd.c make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build -Scanning dependencies of target apbs_pmgc -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build +Scanning dependencies of target apbslib_swig_compilation make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 1%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o -[ 2%] Swig compile apbslib.i for python -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python && /usr/bin/cmake -E make_directory /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/femparm.c [ 3%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o -[ 4%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/mgparm.c -[ 5%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o +[ 4%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o +[ 5%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/nosh.c [ 6%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o -[ 8%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildBd.c -[ 9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o -[ 10%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildGd.c -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python && /usr/bin/cmake -E touch /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp -[ 11%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/pbamparm.c +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/mgparm.c +[ 9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o +[ 9%] Swig compile apbslib.i for python +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python && /usr/bin/cmake -E make_directory /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildPd.c -[ 12%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o -[ 13%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildAd.c +[ 10%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/cgd.c -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig4.0 -python -outdir /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python -interface _apbslib -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -I/usr/include/python3.9 -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/python -o /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/python/apbslib.i +[ 11%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/femparm.c cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/gsd.c +[ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python && /usr/bin/cmake -E touch /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/pbamparm.c +[ 13%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/matvecd.c -[ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/pbsamparm.c -[ 16%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig4.0 -python -outdir /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python -interface _apbslib -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -I/usr/include/python3.9 -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/python -o /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/python/apbslib.i +[ 15%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgcsd.c -[ 17%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o +[ 16%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgdrvd.c -[ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o +[ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/pbsamparm.c +[ 18%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgsubd.c +[ 19%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/pbeparm.c -[ 19%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 19%] Built target apbslib_swig_compilation +[ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/bemparm.c -[ 20%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgsubd.c [ 22%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/geoflowparm.c -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 22%] Built target apbslib_swig_compilation -[ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/apolparm.c -[ 24%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o +[ 23%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/mikpckd.c -[ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vacc.c -[ 26%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o +[ 24%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/apolparm.c +[ 25%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/mlinpckd.c -[ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o +[ 26%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o +[ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vacc.c cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/valist.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/valist.c [ 29%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/mypdec.c -[ 30%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vatom.c -[ 31%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vpbe.c -[ 32%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o +[ 30%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/newtond.c -[ 33%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vcap.c -[ 34%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o +[ 31%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vatom.c +[ 32%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/newdrvd.c -[ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o +[ 33%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vpbe.c +[ 34%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/powerd.c -[ 37%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vclist.c -[ 38%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o +[ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o +[ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/smoothd.c -[ 39%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgfasd.c +[ 38%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vcap.c +[ 39%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vclist.c +[ 40%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vstring.c -[ 40%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o +[ 41%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vparam.c -[ 41%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o +[ 43%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/generic/vgreen.c -[ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgfasd.c [ 44%] Linking C shared library ../../lib/libapbs_generic.so cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/generic && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_generic.so.3 -o ../../lib/libapbs_generic.so.3 CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbamparm.c.o CMakeFiles/apbs_generic.dir/pbsamparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/bemparm.c.o CMakeFiles/apbs_generic.dir/geoflowparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp @@ -1177,13 +1212,13 @@ make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' [ 46%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o [ 47%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o -[ 48%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o -[ 50%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o -[ 51%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c +[ 48%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/mg/vmgrid.c cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/mg/vopot.c +[ 50%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/mg/vpmg.c +[ 51%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/mg/vpmgp.c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c:853:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] @@ -1196,168 +1231,131 @@ make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' [ 52%] Built target apbs_mg make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend -make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend -make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend -make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend -make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= -make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend -make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend +make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs_routines.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs_routines.dir/depend.internal". make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= -make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend +make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". +make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend +make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= -make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend -make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= -make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= -make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend +Scanning dependencies of target apbs_routines Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs_routines.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs_routines.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". +Scanning dependencies of target uhbd_asc2bin make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +Scanning dependencies of target mgmesh +make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 53%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o Scanning dependencies of target smooth -Scanning dependencies of target del2dx -Scanning dependencies of target mgmesh +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dapbs_routines_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_routines.dir/routines.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/routines.c make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". Scanning dependencies of target tensor2dx +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +Scanning dependencies of target del2dx Scanning dependencies of target mergedx -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". -make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -Scanning dependencies of target uhbd_asc2bin -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build +[ 54%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/mgmesh.c make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". -Scanning dependencies of target mergedx2 -Scanning dependencies of target apbs_routines +make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build +[ 55%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend +[ 58%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o +[ 58%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mergedx.dir/mergedx.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/mergedx.c +[ 59%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/del2dx.dir/del2dx.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". +make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build -make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -Scanning dependencies of target benchmark +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/value.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/value.dir/depend.internal". +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= +[ 60%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/smooth.dir/smooth.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/smooth.c +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". Scanning dependencies of target dxmath -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 53%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o +Scanning dependencies of target mergedx2 make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +Scanning dependencies of target benchmark +make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/smooth.dir/smooth.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/smooth.c -Scanning dependencies of target value -[ 54%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/value.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/value.dir/depend.internal". Scanning dependencies of target dx2mol -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build -[ 56%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o -[ 56%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o -[ 58%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mergedx.dir/mergedx.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/mergedx.c -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/mergedx2.c -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/del2dx.dir/del2dx.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c -[ 59%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o -make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/mgmesh.c -[ 60%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o +make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build +[ 61%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 61%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o +Scanning dependencies of target value +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dapbs_routines_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_routines.dir/routines.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/routines.c +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dxmath.dir/dxmath.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/dxmath.c make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build -[ 62%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c +[ 62%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dxmath.dir/dxmath.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/dxmath.c -[ 63%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/value.dir/value.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/value.c -[ 65%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/dx2mol.c -[ 66%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/benchmark.dir/benchmark.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/benchmark.c -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c: In function 'main': -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:97:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:98:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 98 | fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:137:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:138:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 138 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:139:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 139 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:140:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 140 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:155:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 155 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:156:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 156 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:157:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 157 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:158:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 158 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/mergedx2.c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 30 | scanf("%s", flnm); @@ -1446,6 +1444,43 @@ /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fscanf(inFile, "%lf", RAT3(grid, i, j, k)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 63%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/benchmark.dir/benchmark.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/benchmark.c +[ 65%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c: In function 'main': +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:97:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:98:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 98 | fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:137:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:138:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 138 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:139:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 139 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:140:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 140 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:155:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 155 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:156:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 156 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:157:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 157 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:158:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 158 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 66%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/dx2mol.c +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/value.dir/value.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/value.c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c: In function 'main': /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c:76:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(&igrid, 1, sizeof(int), pfile); @@ -1466,132 +1501,127 @@ cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mgmesh.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mgmesh.dir/mgmesh.c.o -o ../bin/mgmesh ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp [ 68%] Linking C executable ../bin/tensor2dx -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../bin/tensor2dx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp [ 69%] Linking C executable ../bin/uhbd_asc2bin +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/uhbd_asc2bin.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../bin/tensor2dx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../bin/uhbd_asc2bin ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp [ 70%] Linking C executable ../bin/del2dx cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/del2dx.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/del2dx.dir/del2dx.c.o -o ../bin/del2dx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -[ 72%] Linking C executable ../bin/dxmath -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dxmath.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dxmath.dir/dxmath.c.o -o ../bin/dxmath ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -[ 73%] Linking C executable ../bin/value +[ 72%] Linking C executable ../bin/value cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/value.dir/link.txt --verbose=1 -[ 74%] Linking C executable ../bin/dx2mol +[ 73%] Linking C executable ../bin/dx2mol cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2mol.dir/link.txt --verbose=1 -[ 75%] Linking C executable ../bin/smooth -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/value.dir/value.c.o -o ../bin/value ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../bin/dx2mol ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/smooth.dir/smooth.c.o -o ../bin/smooth ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 75%] Built target tensor2dx -[ 76%] Linking C executable ../bin/benchmark +[ 74%] Linking C executable ../bin/benchmark cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/benchmark.dir/benchmark.c.o -o ../bin/benchmark ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +[ 74%] Built target mgmesh make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= -[ 76%] Built target mgmesh -make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/benchmark.dir/benchmark.c.o -o ../bin/benchmark ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 77%] Linking C executable ../bin/mergedx -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 +[ 75%] Linking C executable ../bin/smooth +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=1 Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 77%] Built target value +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/smooth.dir/smooth.c.o -o ../bin/smooth ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp Scanning dependencies of target multivalue make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend +make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 76%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/multivalue.dir/multivalue.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/multivalue.c make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 76%] Built target tensor2dx +make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= +[ 76%] Built target del2dx +make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/depend.internal". -make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build -[ 77%] Built target uhbd_asc2bin -Scanning dependencies of target similarity make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 77%] Built target dxmath -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx.dir/mergedx.c.o -o ../bin/mergedx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -[ 79%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/multivalue.dir/multivalue.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/multivalue.c Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/depend.internal". Scanning dependencies of target analysis -make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build +Scanning dependencies of target similarity make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 79%] Built target smooth +make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 79%] Built target del2dx -[ 80%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/similarity.dir/similarity.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/similarity.c +[ 76%] Built target value make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 77%] Linking C executable ../bin/dxmath +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dxmath.dir/link.txt --verbose=1 make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend -make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend +[ 79%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= +[ 79%] Built target uhbd_asc2bin +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/similarity.dir/similarity.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/similarity.c +make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend +[ 80%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dxmath.dir/dxmath.c.o -o ../bin/dxmath ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/analysis.dir/analysis.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/analysis.c make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/manip /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= +[ 80%] Built target dx2mol make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/born.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/born.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/born.dir/depend.internal". make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/manip /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= -[ 80%] Built target dx2mol Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/born.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/born.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/born.dir/depend.internal". -[ 81%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/depend.internal". Scanning dependencies of target born -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/analysis.dir/analysis.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/analysis.c Scanning dependencies of target dx2uhbd make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build -Scanning dependencies of target coulomb make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build -[ 82%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/depend.internal". +[ 81%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o +[ 81%] Built target benchmark cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/mesh/dx2uhbd.c +Scanning dependencies of target coulomb +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 83%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o +[ 82%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/born.dir/born.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/manip/born.c +[ 83%] Linking C executable ../bin/mergedx [ 84%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/coulomb.dir/coulomb.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/manip/coulomb.c -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/born.dir/born.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/manip/born.c -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 86%] Linking C executable ../bin/mergedx2 -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 -[ 87%] Linking C executable ../bin/multivalue -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 84%] Built target smooth +[ 86%] Linking C executable ../bin/multivalue cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/multivalue.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../bin/mergedx2 ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -[ 87%] Built target benchmark +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx.dir/mergedx.c.o -o ../bin/mergedx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/multivalue.dir/multivalue.c.o -o ../bin/multivalue ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -[ 87%] Built target mergedx -[ 88%] Linking C executable ../bin/dx2uhbd +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 86%] Built target dxmath +[ 87%] Linking C executable ../bin/dx2uhbd cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2uhbd.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../bin/dx2uhbd ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -[ 89%] Linking C executable ../bin/analysis -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 -[ 90%] Linking C executable ../bin/coulomb make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../bin/dx2uhbd ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +[ 88%] Linking C executable ../bin/mergedx2 +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../bin/mergedx2 ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +[ 88%] Built target mergedx /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/routines.c: In function 'writematMG': /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); @@ -1607,27 +1637,24 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 89%] Linking C executable ../bin/analysis +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 +[ 90%] Linking C executable ../bin/coulomb +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/analysis.dir/analysis.c.o -o ../bin/analysis ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/coulomb.dir/coulomb.c.o -o ../bin/coulomb ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -[ 90%] Built target mergedx2 -[ 90%] Built target multivalue [ 91%] Linking C executable ../bin/born cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/coulomb.dir/coulomb.c.o -o ../bin/coulomb ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/born.dir/born.c.o -o ../bin/born ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +[ 91%] Built target multivalue +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 91%] Built target mergedx2 +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' [ 93%] Linking C executable ../bin/similarity cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' [ 93%] Built target dx2uhbd -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 93%] Built target analysis -[ 93%] Built target coulomb -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 93%] Built target born -make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 93%] Built target similarity +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/routines.c: In function 'writedataMG': /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2694 | sprintf(outpath, "%s.%s", writestem, "mcsf"); @@ -1727,6 +1754,14 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 93%] Built target born +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 93%] Built target analysis +[ 93%] Built target coulomb +make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +[ 93%] Built target similarity [ 94%] Linking C shared library ../lib/libapbs_routines.so cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_routines.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_routines.so.3 -o ../lib/libapbs_routines.so.3 CMakeFiles/apbs_routines.dir/routines.c.o -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp ../lib/libapbs_mg.so.3 ../lib/libapbs_generic.so.3 ../lib/libapbs_pmgc.so.3 -lm -lstdc++ /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp @@ -1734,27 +1769,27 @@ make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' [ 94%] Built target apbs_routines make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend -make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= +make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/depend make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/apbs-3.0.0+dfsg1/apbs /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/python /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs.dir/depend.internal". Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src/CMakeFiles/apbs.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/depend.internal". -Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/depend.internal". Scanning dependencies of target apbs make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build -Scanning dependencies of target _apbslib +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/depend.internal". +Dependee "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/depend.internal". make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +Scanning dependencies of target _apbslib +[ 95%] Building C object src/CMakeFiles/apbs.dir/main.c.o make[4]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/apbs.dir/main.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/main.c +[ 96%] Building C object src/CMakeFiles/apbs.dir/routines.c.o make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/build -make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' -[ 95%] Building C object src/CMakeFiles/apbs.dir/routines.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/apbs.dir/routines.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/routines.c -[ 96%] Building C object src/CMakeFiles/apbs.dir/main.c.o -cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/apbs.dir/main.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/main.c +make[4]: Entering directory '/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu' [ 97%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o cd /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python && /usr/bin/cc -D_apbslib_EXPORTS -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/src -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/include -I/usr/include/python3.9 -I/build/reproducible-path/apbs-3.0.0+dfsg1/apbs/tools/python -g -O2 -fdebug-prefix-map=/build/reproducible-path/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -c /build/reproducible-path/apbs-3.0.0+dfsg1/obj-aarch64-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/reproducible-path/apbs-3.0.0+dfsg1/apbs/src/main.c: In function 'main': @@ -1904,7 +1939,7 @@ -------------------------------------------------------------------------------- Testing forces from apbs-forces.in -Checking forces for input file apbs-forces.inChecking Polar ForcesChecking Apolar ForcesElapsed time: 0.002255 seconds +Checking forces for input file apbs-forces.inChecking Polar ForcesChecking Apolar ForcesElapsed time: 0.001235 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-auto.in @@ -2186,7 +2221,7 @@ *** PASSED *** Testing computed result -2.297735526282E+02 against expected result -2.297735E+02 *** PASSED *** -Elapsed time: 4.729238 seconds +Elapsed time: 3.594922 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-auto.in @@ -2466,7 +2501,7 @@ *** PASSED *** Testing computed result -2.290124252387E+02 against expected result -2.290124E+02 *** PASSED *** -Elapsed time: 3.929296 seconds +Elapsed time: 9.366635 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-parallel.in @@ -3614,7 +3649,7 @@ *** PASSED *** Testing computed result -2.304918486746E+02 against expected result -2.304918E+02 *** PASSED *** -Elapsed time: 20.936495 seconds +Elapsed time: 41.327989 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-parallel.in @@ -4762,9 +4797,9 @@ *** PASSED *** Testing computed result -2.293871439560E+02 against expected result -2.293871E+02 *** PASSED *** -Elapsed time: 23.913215 seconds +Elapsed time: 43.776381 seconds -------------------------------------------------------------------------------- -Total elapsed time: 53.510499 seconds +Total elapsed time: 98.067162 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for actin-dimer-auto section @@ -5061,7 +5096,7 @@ *** PASSED *** Testing computed result 1.048683058621E+02 against expected result 1.048683E+02 *** PASSED *** -Elapsed time: 153.732351 seconds +Elapsed time: 157.918494 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-auto.in @@ -5356,9 +5391,9 @@ *** PASSED *** Testing computed result 1.095841077688E+02 against expected result 1.095841E+02 *** PASSED *** -Elapsed time: 105.869379 seconds +Elapsed time: 80.425593 seconds -------------------------------------------------------------------------------- -Total elapsed time: 259.601730 seconds +Total elapsed time: 238.344087 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for actin-dimer-parallel section @@ -7844,7 +7879,7 @@ *** PASSED *** Testing computed result 9.817574414204E+01 against expected result 9.817456E+01 *** PASSED (with rounding error - see log) *** -Elapsed time: 352.900874 seconds +Elapsed time: 237.313488 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-parallel.in @@ -10328,9 +10363,9 @@ *** PASSED *** Testing computed result 1.155431984335E+02 against expected result 1.155421E+02 *** PASSED (with rounding error - see log) *** -Elapsed time: 266.964683 seconds +Elapsed time: 192.513619 seconds -------------------------------------------------------------------------------- -Total elapsed time: 619.865557 seconds +Total elapsed time: 429.827107 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for alkanes section @@ -11245,9 +11280,9 @@ *** PASSED *** Testing computed result 1.192358496286E+01 against expected result 1.192358E+01 *** PASSED *** -Elapsed time: 9.009629 seconds +Elapsed time: 8.975092 seconds -------------------------------------------------------------------------------- -Total elapsed time: 9.009629 seconds +Total elapsed time: 8.975092 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for FKBP section @@ -11753,7 +11788,7 @@ *** PASSED *** Testing computed result 1.500810086373E+01 against expected result 1.500810E+01 *** PASSED *** -Elapsed time: 16.850045 seconds +Elapsed time: 13.057560 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7h-dmso-smol.in @@ -12257,7 +12292,7 @@ *** PASSED *** Testing computed result 1.624454192074E+01 against expected result 1.624454E+01 *** PASSED *** -Elapsed time: 12.652224 seconds +Elapsed time: 10.465530 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7i-dss-mol.in @@ -12761,7 +12796,7 @@ *** PASSED *** Testing computed result 1.442499933664E+01 against expected result 1.442501E+01 *** PASSED *** -Elapsed time: 16.975524 seconds +Elapsed time: 12.730904 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7i-dss-smol.in @@ -13265,9 +13300,9 @@ *** PASSED *** Testing computed result 1.545150742843E+01 against expected result 1.545150E+01 *** PASSED *** -Elapsed time: 19.755398 seconds +Elapsed time: 9.104988 seconds -------------------------------------------------------------------------------- -Total elapsed time: 66.233191 seconds +Total elapsed time: 45.358982 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for hca-bind section @@ -13671,7 +13706,7 @@ *** PASSED *** Testing computed result -5.246475812684E+01 against expected result -5.246476E+01 *** PASSED *** -Elapsed time: 25.479118 seconds +Elapsed time: 8.540935 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -14073,9 +14108,9 @@ *** PASSED *** Testing computed result -5.405979017059E+01 against expected result -5.405978E+01 *** PASSED *** -Elapsed time: 16.852098 seconds +Elapsed time: 7.727165 seconds -------------------------------------------------------------------------------- -Total elapsed time: 42.331216 seconds +Total elapsed time: 16.268100 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for ionize section @@ -14589,7 +14624,7 @@ *** PASSED *** Testing computed result -4.745272838398E+02 against expected result -4.745273E+02 *** PASSED *** -Elapsed time: 18.649867 seconds +Elapsed time: 3.928353 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -15101,9 +15136,9 @@ *** PASSED *** Testing computed result -4.721246714828E+02 against expected result -4.721247E+02 *** PASSED *** -Elapsed time: 15.786108 seconds +Elapsed time: 3.088527 seconds -------------------------------------------------------------------------------- -Total elapsed time: 34.435975 seconds +Total elapsed time: 7.016880 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for ion-pmf section @@ -15388,9 +15423,9 @@ *** PASSED *** Testing computed result -1.125191605614E+03 against expected result -1.125192E+03 *** PASSED *** -Elapsed time: 7.552163 seconds +Elapsed time: 5.434931 seconds -------------------------------------------------------------------------------- -Total elapsed time: 7.552163 seconds +Total elapsed time: 5.434931 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for pka-lig section @@ -15697,7 +15732,7 @@ *** PASSED *** Testing computed result 8.083515648803E+00 against expected result 8.083516E+00 *** PASSED *** -Elapsed time: 28.886976 seconds +Elapsed time: 13.769198 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-vdw.in @@ -16002,7 +16037,7 @@ *** PASSED *** Testing computed result 2.096300255720E+01 against expected result 2.096296E+01 *** PASSED *** -Elapsed time: 19.631509 seconds +Elapsed time: 10.760865 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-surf.in @@ -16307,7 +16342,7 @@ *** PASSED *** Testing computed result 1.192607686582E+02 against expected result 1.192608E+02 *** PASSED *** -Elapsed time: 21.501861 seconds +Elapsed time: 10.982970 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-surf.in @@ -16612,9 +16647,9 @@ *** PASSED *** Testing computed result 1.088773280806E+02 against expected result 1.088773E+02 *** PASSED *** -Elapsed time: 17.059471 seconds +Elapsed time: 9.887171 seconds -------------------------------------------------------------------------------- -Total elapsed time: 87.079817 seconds +Total elapsed time: 45.400204 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for point-pmf section @@ -16852,7 +16887,7 @@ *** PASSED *** Testing computed result 1.830820799027E+01 against expected result 1.830821E+01 *** PASSED *** -Elapsed time: 3.181073 seconds +Elapsed time: 0.724415 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_2.in @@ -17088,7 +17123,7 @@ *** PASSED *** Testing computed result 8.906694086751E+00 against expected result 8.906694E+00 *** PASSED *** -Elapsed time: 3.196287 seconds +Elapsed time: 0.714037 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_3.in @@ -17324,7 +17359,7 @@ *** PASSED *** Testing computed result 5.909599816984E+00 against expected result 5.909600E+00 *** PASSED *** -Elapsed time: 3.777782 seconds +Elapsed time: 0.718038 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_4.in @@ -17560,9 +17595,9 @@ *** PASSED *** Testing computed result 4.430144947418E+00 against expected result 4.430145E+00 *** PASSED *** -Elapsed time: 3.562005 seconds +Elapsed time: 0.680675 seconds -------------------------------------------------------------------------------- -Total elapsed time: 13.717147 seconds +Total elapsed time: 2.837165 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for solv section @@ -17809,7 +17844,7 @@ *** PASSED *** Testing computed result -3.541635359318E+02 against expected result -3.541635E+02 *** PASSED *** -Elapsed time: 5.617162 seconds +Elapsed time: 1.049783 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -18090,9 +18125,9 @@ *** PASSED *** Testing computed result -3.536629226599E+02 against expected result -3.536629E+02 *** PASSED *** -Elapsed time: 4.948395 seconds +Elapsed time: 1.073440 seconds -------------------------------------------------------------------------------- -Total elapsed time: 10.565557 seconds +Total elapsed time: 2.123223 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for protein-rna section @@ -18401,7 +18436,7 @@ *** PASSED *** Testing computed result 8.674116429346E+01 against expected result 8.674116E+01 *** PASSED *** -Elapsed time: 46.745074 seconds +Elapsed time: 11.420543 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.050.in @@ -18708,7 +18743,7 @@ *** PASSED *** Testing computed result 9.606836713875E+01 against expected result 9.606837E+01 *** PASSED *** -Elapsed time: 51.494928 seconds +Elapsed time: 11.068490 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.075.in @@ -19015,7 +19050,7 @@ *** PASSED *** Testing computed result 1.011537214883E+02 against expected result 1.011537E+02 *** PASSED *** -Elapsed time: 48.519845 seconds +Elapsed time: 10.762713 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.100.in @@ -19322,7 +19357,7 @@ *** PASSED *** Testing computed result 1.046142116108E+02 against expected result 1.046142E+02 *** PASSED *** -Elapsed time: 48.034124 seconds +Elapsed time: 11.397186 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.125.in @@ -19629,7 +19664,7 @@ *** PASSED *** Testing computed result 1.072226817610E+02 against expected result 1.072227E+02 *** PASSED *** -Elapsed time: 49.309992 seconds +Elapsed time: 11.679754 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.150.in @@ -19936,7 +19971,7 @@ *** PASSED *** Testing computed result 1.093084123762E+02 against expected result 1.093084E+02 *** PASSED *** -Elapsed time: 46.524439 seconds +Elapsed time: 11.671237 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.175.in @@ -20243,7 +20278,7 @@ *** PASSED *** Testing computed result 1.110412443878E+02 against expected result 1.110412E+02 *** PASSED *** -Elapsed time: 43.434527 seconds +Elapsed time: 11.402276 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.200.in @@ -20550,7 +20585,7 @@ *** PASSED *** Testing computed result 1.125199716537E+02 against expected result 1.125200E+02 *** PASSED *** -Elapsed time: 33.271246 seconds +Elapsed time: 15.156342 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.225.in @@ -20857,7 +20892,7 @@ *** PASSED *** Testing computed result 1.138070465620E+02 against expected result 1.138070E+02 *** PASSED *** -Elapsed time: 36.515210 seconds +Elapsed time: 18.603832 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.250.in @@ -21164,7 +21199,7 @@ *** PASSED *** Testing computed result 1.149444369079E+02 against expected result 1.149444E+02 *** PASSED *** -Elapsed time: 44.198626 seconds +Elapsed time: 18.392692 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.275.in @@ -21471,7 +21506,7 @@ *** PASSED *** Testing computed result 1.159616972339E+02 against expected result 1.159617E+02 *** PASSED *** -Elapsed time: 45.104118 seconds +Elapsed time: 18.144738 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.300.in @@ -21778,7 +21813,7 @@ *** PASSED *** Testing computed result 1.168804254686E+02 against expected result 1.168804E+02 *** PASSED *** -Elapsed time: 49.128707 seconds +Elapsed time: 20.613214 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.325.in @@ -22085,7 +22120,7 @@ *** PASSED *** Testing computed result 1.177168854907E+02 against expected result 1.177169E+02 *** PASSED *** -Elapsed time: 47.945788 seconds +Elapsed time: 19.584746 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.400.in @@ -22392,7 +22427,7 @@ *** PASSED *** Testing computed result 1.198456038803E+02 against expected result 1.198456E+02 *** PASSED *** -Elapsed time: 46.741714 seconds +Elapsed time: 20.997644 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.500.in @@ -22699,7 +22734,7 @@ *** PASSED *** Testing computed result 1.220607673699E+02 against expected result 1.220608E+02 *** PASSED *** -Elapsed time: 36.282305 seconds +Elapsed time: 17.519934 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.600.in @@ -23006,7 +23041,7 @@ *** PASSED *** Testing computed result 1.238080564885E+02 against expected result 1.238081E+02 *** PASSED *** -Elapsed time: 23.543987 seconds +Elapsed time: 14.931017 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.700.in @@ -23313,7 +23348,7 @@ *** PASSED *** Testing computed result 1.252364090878E+02 against expected result 1.252364E+02 *** PASSED *** -Elapsed time: 22.754634 seconds +Elapsed time: 17.741684 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-0.800.in @@ -23620,9 +23655,9 @@ *** PASSED *** Testing computed result 1.264340604647E+02 against expected result 1.264341E+02 *** PASSED *** -Elapsed time: 21.505173 seconds +Elapsed time: 17.184921 seconds -------------------------------------------------------------------------------- -Total elapsed time: 741.054437 seconds +Total elapsed time: 278.272963 seconds Test results have been logged -------------------------------------------------------------------------------- make[1]: Leaving directory '/build/reproducible-path/apbs-3.0.0+dfsg1' @@ -24340,16 +24375,16 @@ -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/born -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/coulomb -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/analysis +-- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mergedx2 -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dx2uhbd -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/multivalue --- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mergedx2 -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mergedx +-- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dxmath +-- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/smooth -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/benchmark -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dx2mol --- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/smooth -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/value -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/del2dx --- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dxmath -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/uhbd_asc2bin -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/tensor2dx -- Installing: /build/reproducible-path/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mgmesh @@ -24449,12 +24484,12 @@ dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libapbs3/usr/lib/aarch64-linux-gnu/libapbs_generic.so.3 was not linked against libpthread.so.0 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb were not linked against libmpi.so.40 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb were not linked against libapbs_pmgc.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb were not linked against libpthread.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb were not linked against libgomp.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh were not linked against libapbs_pmgc.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh were not linked against libpthread.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh were not linked against libstdc++.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh were not linked against libmpi.so.40 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/bin/apbs was not linked against libapbs_routines.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb were not linked against libstdc++.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh were not linked against libgomp.so.1 (they use none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libapbs-dev: substitution variable ${shlibs:Depends} used, but is not defined @@ -24464,14 +24499,14 @@ dpkg-gencontrol: warning: package python3-apbslib: substitution variable ${python3:Versions} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'apbs' in '../apbs_3.0.0+dfsg1-3_arm64.deb'. dpkg-deb: building package 'apbs-dbgsym' in '../apbs-dbgsym_3.0.0+dfsg1-3_arm64.deb'. +dpkg-deb: building package 'apbs' in '../apbs_3.0.0+dfsg1-3_arm64.deb'. +dpkg-deb: building package 'python3-apbslib' in '../python3-apbslib_3.0.0+dfsg1-3_arm64.deb'. dpkg-deb: building package 'python3-apbslib-dbgsym' in '../python3-apbslib-dbgsym_3.0.0+dfsg1-3_arm64.deb'. -dpkg-deb: building package 'libapbs3' in '../libapbs3_3.0.0+dfsg1-3_arm64.deb'. dpkg-deb: building package 'libapbs-dev' in '../libapbs-dev_3.0.0+dfsg1-3_arm64.deb'. -dpkg-deb: building package 'apbs-data' in '../apbs-data_3.0.0+dfsg1-3_all.deb'. +dpkg-deb: building package 'libapbs3' in '../libapbs3_3.0.0+dfsg1-3_arm64.deb'. dpkg-deb: building package 'libapbs3-dbgsym' in '../libapbs3-dbgsym_3.0.0+dfsg1-3_arm64.deb'. -dpkg-deb: building package 'python3-apbslib' in '../python3-apbslib_3.0.0+dfsg1-3_arm64.deb'. +dpkg-deb: building package 'apbs-data' in '../apbs-data_3.0.0+dfsg1-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../apbs_3.0.0+dfsg1-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -24479,12 +24514,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4131060/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4131060/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1058048 and its subdirectories -I: Current time: Fri Feb 7 13:53:12 -12 2025 -I: pbuilder-time-stamp: 1738979592 +I: removing directory /srv/workspace/pbuilder/4131060 and its subdirectories +I: Current time: Sun Jan 7 09:53:34 +14 2024 +I: pbuilder-time-stamp: 1704570814