Diff of the two buildlogs:
--
--- b1/build.log 2021-07-26 14:28:24.576506766 +0000
+++ b2/build.log 2021-07-26 14:34:12.063310866 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Sun Aug 28 08:43:35 -12 2022
-I: pbuilder-time-stamp: 1661719415
+I: Current time: Tue Jul 27 04:28:29 +14 2021
+I: pbuilder-time-stamp: 1627309709
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
@@ -16,8 +16,8 @@
I: copying [./diamond-aligner_2.0.7-1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
-gpgv: keyblock resource '/tmp/dpkg-verify-sig.G3Tko8d5/trustedkeys.kbx': General error
-gpgv: Signature made Sun Feb 14 20:34:32 2021 -12
+gpgv: keyblock resource '/tmp/dpkg-verify-sig.gTproSvq/trustedkeys.kbx': General error
+gpgv: Signature made Mon Feb 15 22:34:32 2021 +14
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./diamond-aligner_2.0.7-1.dsc
@@ -26,135 +26,169 @@
dpkg-source: info: unpacking diamond-aligner_2.0.7-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/26190/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/23362/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink12-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/23362/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/23362/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='arm64'
- DEBIAN_FRONTEND='noninteractive'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
+ BASH_VERSION='5.1.4(1)-release'
+ BUILDDIR=/build
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=arm64
+ DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8'
- DISTRIBUTION=''
- HOME='/var/lib/jenkins'
- HOST_ARCH='arm64'
+ DIRSTACK=()
+ DISTRIBUTION=
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/var/lib/jenkins
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=aarch64
+ HOST_ARCH=arm64
IFS='
'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='26190'
- PS1='# '
- PS2='> '
+ LANG=C
+ LANGUAGE=nl_BE:nl
+ LC_ALL=C
+ MACHTYPE=aarch64-unknown-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=23362
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Luou9RKT2p/pbuilderrc_XG61 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Luou9RKT2p/b1 --logfile b1/build.log diamond-aligner_2.0.7-1.dsc'
- SUDO_GID='117'
- SUDO_UID='110'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- USERNAME='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://192.168.101.16:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Luou9RKT2p/pbuilderrc_5q6y --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Luou9RKT2p/b2 --logfile b2/build.log --extrapackages usrmerge diamond-aligner_2.0.7-1.dsc'
+ SUDO_GID=117
+ SUDO_UID=110
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ USERNAME=root
+ _='I: set'
+ http_proxy=http://192.168.101.16:3128
I: uname -a
- Linux codethink9-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux
+ Linux i-capture-the-hostname 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux
I: ls -l /bin
total 5252
- -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash
- -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2
- -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
- -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
- -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
- -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
- -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2
- -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
- -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
- -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat
- -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp
- -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod
- -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown
- -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp
- -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash
- -rwxr-xr-x 1 root root 101384 Sep 22 2020 date
- -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd
- -rwxr-xr-x 1 root root 89824 Sep 22 2020 df
- -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir
- -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg
- lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
- lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
- -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo
- -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
- -rwxr-xr-x 1 root root 31512 Sep 22 2020 false
- -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
- -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt
- -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount
- -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep
- -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip
- -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe
- -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip
- -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname
- -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln
- -rwxr-xr-x 1 root root 52720 Feb 7 2020 login
- -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls
- -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk
- -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir
- -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod
- -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp
- -rwxr-xr-x 1 root root 51368 Feb 7 2021 more
- -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount
- -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint
- -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv
- lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
- lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5
- -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd
- lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash
- -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink
- -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm
- -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir
- -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts
- -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed
- lrwxrwxrwx 1 root root 4 Aug 28 03:47 sh -> dash
- -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep
- -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty
- -rwsr-xr-x 1 root root 67776 Feb 7 2021 su
- -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync
- -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar
- -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile
- -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch
- -rwxr-xr-x 1 root root 31512 Sep 22 2020 true
- -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server
- -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount
- -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname
- -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress
- -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir
- -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl
- lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
- -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat
- -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp
- -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff
- -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep
- -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep
- -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce
- -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep
- -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless
- -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore
- -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew
-I: user script /srv/workspace/pbuilder/26190/tmp/hooks/D02_print_environment finished
+ -rwxr-xr-x 1 root root 1282512 Jun 22 16:26 bash
+ -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2
+ -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff
+ -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep
+ -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep
+ -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep
+ -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2
+ -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore
+ -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore
+ -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat
+ -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp
+ -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod
+ -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown
+ -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp
+ -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash
+ -rwxr-xr-x 1 root root 101384 Sep 23 2020 date
+ -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd
+ -rwxr-xr-x 1 root root 89824 Sep 23 2020 df
+ -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir
+ -rwxr-xr-x 1 root root 76152 Feb 8 04:38 dmesg
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname
+ -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo
+ -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep
+ -rwxr-xr-x 1 root root 31512 Sep 23 2020 false
+ -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep
+ -rwxr-xr-x 1 root root 64856 Feb 8 04:38 findmnt
+ -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount
+ -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep
+ -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip
+ -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe
+ -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip
+ -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname
+ -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln
+ -rwxr-xr-x 1 root root 52720 Feb 8 2020 login
+ -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls
+ -rwxr-xr-x 1 root root 161960 Feb 8 04:38 lsblk
+ -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir
+ -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod
+ -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp
+ -rwxr-xr-x 1 root root 51368 Feb 8 04:38 more
+ -rwsr-xr-x 1 root root 51360 Feb 8 04:38 mount
+ -rwxr-xr-x 1 root root 14496 Feb 8 04:38 mountpoint
+ -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname
+ lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5
+ -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd
+ lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash
+ -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink
+ -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm
+ -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir
+ -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts
+ -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed
+ lrwxrwxrwx 1 root root 4 Jul 27 04:28 sh -> bash
+ lrwxrwxrwx 1 root root 4 Jul 25 23:25 sh.distrib -> dash
+ -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep
+ -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty
+ -rwsr-xr-x 1 root root 67776 Feb 8 04:38 su
+ -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync
+ -rwxr-xr-x 1 root root 535768 Feb 17 23:55 tar
+ -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile
+ -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch
+ -rwxr-xr-x 1 root root 31512 Sep 23 2020 true
+ -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server
+ -rwsr-xr-x 1 root root 30880 Feb 8 04:38 umount
+ -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname
+ -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress
+ -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir
+ -rwxr-xr-x 1 root root 59584 Feb 8 04:38 wdctl
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname
+ -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat
+ -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp
+ -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff
+ -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep
+ -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep
+ -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce
+ -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep
+ -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless
+ -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore
+ -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew
+I: user script /srv/workspace/pbuilder/23362/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -245,7 +279,7 @@
Get: 49 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 50 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB]
Get: 51 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB]
-Fetched 26.2 MB in 1s (43.7 MB/s)
+Fetched 26.2 MB in 1s (30.8 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19646 files and directories currently installed.)
@@ -464,8 +498,45 @@
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following additional packages will be installed:
+ libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl
+The following NEW packages will be installed:
+ libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge
+0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded.
+Need to get 59.5 kB of archives.
+After this operation, 157 kB of additional disk space will be used.
+Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B]
+Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B]
+Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB]
+Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 59.5 kB in 0s (1091 kB/s)
+Selecting previously unselected package libnumber-compare-perl.
+(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 24683 files and directories currently installed.)
+Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ...
+Unpacking libnumber-compare-perl (0.03-1.1) ...
+Selecting previously unselected package libtext-glob-perl.
+Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ...
+Unpacking libtext-glob-perl (0.11-1) ...
+Selecting previously unselected package libfile-find-rule-perl.
+Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ...
+Unpacking libfile-find-rule-perl (0.34-1) ...
+Selecting previously unselected package usrmerge.
+Preparing to unpack .../archives/usrmerge_25_all.deb ...
+Unpacking usrmerge (25) ...
+Setting up libtext-glob-perl (0.11-1) ...
+Setting up libnumber-compare-perl (0.03-1.1) ...
+Setting up libfile-find-rule-perl (0.34-1) ...
+Setting up usrmerge (25) ...
+The system has been successfully converted.
+Processing triggers for man-db (2.9.4-2) ...
+Not building database; man-db/auto-update is not 'true'.
I: Building the package
-I: Running cd /build/diamond-aligner-2.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../diamond-aligner_2.0.7-1_source.changes
+hostname: Temporary failure in name resolution
+I: Running cd /build/diamond-aligner-2.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../diamond-aligner_2.0.7-1_source.changes
dpkg-buildpackage: info: source package diamond-aligner
dpkg-buildpackage: info: source version 2.0.7-1
dpkg-buildpackage: info: source distribution unstable
@@ -480,7 +551,7 @@
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
-make[1]: Entering directory '/build/diamond-aligner-2.0.7'
+make[1]: Map '/build/diamond-aligner-2.0.7' wordt binnengegaan
dh_auto_configure -- -DX86=OFF
cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DX86=OFF ..
-- The C compiler identification is GNU 10.2.1
@@ -518,69 +589,69 @@
-- Build files have been written to: /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu
-make[1]: Leaving directory '/build/diamond-aligner-2.0.7'
+make[1]: Map '/build/diamond-aligner-2.0.7' wordt verlaten
dh_auto_build
cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1
-make[1]: Entering directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[1]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt binnengegaan
/usr/bin/cmake -S/build/diamond-aligner-2.0.7 -B/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
-make[2]: Entering directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[2]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt binnengegaan
make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/depend
-make[3]: Entering directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[3]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt binnengegaan
cd /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/diamond-aligner-2.0.7 /build/diamond-aligner-2.0.7 /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles/arch_generic.dir/DependInfo.cmake --color=
Dependee "/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles/arch_generic.dir/DependInfo.cmake" is newer than depender "/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles/arch_generic.dir/depend.internal".
Dependee "/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles/arch_generic.dir/depend.internal".
Scanning dependencies of target arch_generic
-make[3]: Leaving directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[3]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt verlaten
make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/build
-make[3]: Entering directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
-[ 0%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o
+make[3]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt binnengegaan
[ 1%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/banded_swipe.cpp.o
-/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /build/diamond-aligner-2.0.7/src/dp/swipe/banded_3frame_swipe.cpp
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_swipe.cpp.o -c /build/diamond-aligner-2.0.7/src/dp/swipe/banded_swipe.cpp
+[ 1%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o
+/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /build/diamond-aligner-2.0.7/src/dp/swipe/banded_3frame_swipe.cpp
[ 1%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage1.cpp.o
-/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/search/stage1.cpp.o -c /build/diamond-aligner-2.0.7/src/search/stage1.cpp
[ 2%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/swipe.cpp.o
+/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/search/stage1.cpp.o -c /build/diamond-aligner-2.0.7/src/search/stage1.cpp
+[ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o
+[ 4%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage2.cpp.o
+[ 4%] Building CXX object CMakeFiles/arch_generic.dir/src/util/tantan.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe.cpp.o -c /build/diamond-aligner-2.0.7/src/dp/swipe/swipe.cpp
-[ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o
-/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/diamond-aligner-2.0.7/src/dp/swipe/swipe_wrapper.cpp
-[ 4%] Building CXX object CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o
-[ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage2.cpp.o
+[ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/search/stage2.cpp.o -c /build/diamond-aligner-2.0.7/src/search/stage2.cpp
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o -c /build/diamond-aligner-2.0.7/src/tools/benchmark.cpp
-[ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/util/tantan.cpp.o
+/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/diamond-aligner-2.0.7/src/dp/swipe/swipe_wrapper.cpp
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/util/tantan.cpp.o -c /build/diamond-aligner-2.0.7/src/util/tantan.cpp
[ 6%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -c /build/diamond-aligner-2.0.7/src/dp/scan_diags.cpp
[ 7%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /build/diamond-aligner-2.0.7/src/dp/ungapped_simd.cpp
-make[3]: Leaving directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[3]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt verlaten
[ 7%] Built target arch_generic
make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend
-make[3]: Entering directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[3]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt binnengegaan
cd /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/diamond-aligner-2.0.7 /build/diamond-aligner-2.0.7 /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake --color=
Dependee "/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake" is newer than depender "/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles/diamond.dir/depend.internal".
Dependee "/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles/diamond.dir/depend.internal".
Scanning dependencies of target diamond
-make[3]: Leaving directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[3]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt verlaten
make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build
-make[3]: Entering directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
-[ 7%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o
+make[3]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt binnengegaan
+[ 8%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o
[ 8%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o
-[ 9%] Building CXX object CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o
-[ 9%] Building CXX object CMakeFiles/diamond.dir/src/data/reference.cpp.o
-[ 10%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/run/main.cpp.o -c /build/diamond-aligner-2.0.7/src/run/main.cpp
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/basic/config.cpp.o -c /build/diamond-aligner-2.0.7/src/basic/config.cpp
-[ 11%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o
-[ 12%] Building CXX object CMakeFiles/diamond.dir/src/output/daa_record.cpp.o
-/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o -c /build/diamond-aligner-2.0.7/src/stats/score_matrix.cpp
-[ 12%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o
+[ 9%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o
+[ 10%] Building CXX object CMakeFiles/diamond.dir/src/output/daa_record.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/data/queries.cpp.o -c /build/diamond-aligner-2.0.7/src/data/queries.cpp
+/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/output/daa_record.cpp.o -c /build/diamond-aligner-2.0.7/src/output/daa_record.cpp
+[ 10%] Building CXX object CMakeFiles/diamond.dir/src/data/reference.cpp.o
+[ 11%] Building CXX object CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o
+[ 12%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o
+[ 12%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o
+/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o -c /build/diamond-aligner-2.0.7/src/stats/score_matrix.cpp
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/data/reference.cpp.o -c /build/diamond-aligner-2.0.7/src/data/reference.cpp
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -c /build/diamond-aligner-2.0.7/src/data/seed_histogram.cpp
-/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/output/daa_record.cpp.o -c /build/diamond-aligner-2.0.7/src/output/daa_record.cpp
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o -c /build/diamond-aligner-2.0.7/src/util/command_line_parser.cpp
[ 13%] Building CXX object CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o -c /build/diamond-aligner-2.0.7/src/util/seq_file_format.cpp
@@ -610,10 +681,10 @@
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/align/legacy/query_mapper.cpp.o -c /build/diamond-aligner-2.0.7/src/align/legacy/query_mapper.cpp
[ 22%] Building CXX object CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o -c /build/diamond-aligner-2.0.7/src/output/blast_tab_format.cpp
-[ 23%] Building CXX object CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o
-/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o -c /build/diamond-aligner-2.0.7/src/output/blast_pairwise_format.cpp
-[ 24%] Building CXX object CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o
+[ 23%] Building CXX object CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o -c /build/diamond-aligner-2.0.7/src/dp/needleman_wunsch.cpp
+[ 24%] Building CXX object CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o
+/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o -c /build/diamond-aligner-2.0.7/src/output/blast_pairwise_format.cpp
[ 25%] Building CXX object CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o -c /build/diamond-aligner-2.0.7/src/run/double_indexed.cpp
[ 25%] Building CXX object CMakeFiles/diamond.dir/src/output/sam_format.cpp.o
@@ -664,10 +735,10 @@
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o -c /build/diamond-aligner-2.0.7/src/util/io/serializer.cpp
[ 42%] Building CXX object CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o -c /build/diamond-aligner-2.0.7/src/util/io/temp_file.cpp
+[ 42%] Building CXX object CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o
+/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o -c /build/diamond-aligner-2.0.7/src/util/io/text_input_file.cpp
[ 43%] Building CXX object CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o -c /build/diamond-aligner-2.0.7/src/data/taxon_list.cpp
-[ 43%] Building CXX object CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o
-/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o -c /build/diamond-aligner-2.0.7/src/util/io/text_input_file.cpp
[ 44%] Building CXX object CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o -c /build/diamond-aligner-2.0.7/src/data/taxonomy_nodes.cpp
[ 45%] Building CXX object CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o
@@ -744,10 +815,10 @@
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/align/gapped_filter.cpp.o -c /build/diamond-aligner-2.0.7/src/align/gapped_filter.cpp
[ 70%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/filestack.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/util/parallel/filestack.cpp.o -c /build/diamond-aligner-2.0.7/src/util/parallel/filestack.cpp
-[ 71%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/parallelizer.cpp.o
-/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/util/parallel/parallelizer.cpp.o -c /build/diamond-aligner-2.0.7/src/util/parallel/parallelizer.cpp
-[ 72%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o
+[ 71%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o -c /build/diamond-aligner-2.0.7/src/util/parallel/multiprocessing.cpp
+[ 72%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/parallelizer.cpp.o
+/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/util/parallel/parallelizer.cpp.o -c /build/diamond-aligner-2.0.7/src/util/parallel/parallelizer.cpp
[ 72%] Building CXX object CMakeFiles/diamond.dir/src/tools/benchmark_io.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/tools/benchmark_io.cpp.o -c /build/diamond-aligner-2.0.7/src/tools/benchmark_io.cpp
[ 73%] Building CXX object CMakeFiles/diamond.dir/src/align/memory.cpp.o
@@ -764,10 +835,10 @@
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -c /build/diamond-aligner-2.0.7/src/lib/alp/njn_localmaxstat.cpp
[ 77%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -c /build/diamond-aligner-2.0.7/src/lib/alp/njn_localmaxstatmatrix.cpp
-[ 78%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o
-/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o -c /build/diamond-aligner-2.0.7/src/lib/alp/njn_localmaxstatutil.cpp
-[ 79%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o
+[ 78%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -c /build/diamond-aligner-2.0.7/src/lib/alp/njn_random.cpp
+[ 79%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o
+/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o -c /build/diamond-aligner-2.0.7/src/lib/alp/njn_localmaxstatutil.cpp
[ 80%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o
/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-2.0.7/src/lib -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -std=gnu++11 -o CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -c /build/diamond-aligner-2.0.7/src/lib/alp/sls_alignment_evaluer.cpp
[ 80%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o
@@ -827,53 +898,53 @@
[100%] Linking CXX executable diamond
/usr/bin/cmake -E cmake_link_script CMakeFiles/diamond.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/diamond.dir/src/run/main.cpp.o CMakeFiles/diamond.dir/src/basic/config.cpp.o CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o CMakeFiles/diamond.dir/src/data/queries.cpp.o CMakeFiles/diamond.dir/src/data/reference.cpp.o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o CMakeFiles/diamond.dir/src/output/daa_record.cpp.o CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o CMakeFiles/diamond.dir/src/util/util.cpp.o CMakeFiles/diamond.dir/src/basic/basic.cpp.o CMakeFiles/diamond.dir/src/basic/hssp.cpp.o CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o CMakeFiles/diamond.dir/src/run/tools.cpp.o CMakeFiles/diamond.dir/src/chaining/greedy_align.cpp.o CMakeFiles/diamond.dir/src/output/output_format.cpp.o CMakeFiles/diamond.dir/src/output/clustering_variables.cpp.o CMakeFiles/diamond.dir/src/output/clustering_format.cpp.o CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o CMakeFiles/diamond.dir/src/align/legacy/query_mapper.cpp.o CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o CMakeFiles/diamond.dir/src/output/sam_format.cpp.o CMakeFiles/diamond.dir/src/align/align.cpp.o CMakeFiles/diamond.dir/src/search/setup.cpp.o CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o CMakeFiles/diamond.dir/src/basic/masking.cpp.o CMakeFiles/diamond.dir/src/dp/banded_sw.cpp.o CMakeFiles/diamond.dir/src/data/seed_set.cpp.o CMakeFiles/diamond.dir/src/util/simd.cpp.o CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o CMakeFiles/diamond.dir/src/output/view.cpp.o CMakeFiles/diamond.dir/src/output/output_sink.cpp.o CMakeFiles/diamond.dir/src/output/target_culling.cpp.o CMakeFiles/diamond.dir/src/align/legacy/banded_swipe_pipeline.cpp.o CMakeFiles/diamond.dir/src/data/ref_dictionary.cpp.o CMakeFiles/diamond.dir/src/util/io/compressed_stream.cpp.o CMakeFiles/diamond.dir/src/util/io/deserializer.cpp.o CMakeFiles/diamond.dir/src/util/io/file_sink.cpp.o CMakeFiles/diamond.dir/src/util/io/file_source.cpp.o CMakeFiles/diamond.dir/src/util/io/input_file.cpp.o CMakeFiles/diamond.dir/src/util/io/input_stream_buffer.cpp.o CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o CMakeFiles/diamond.dir/src/search/stage0.cpp.o CMakeFiles/diamond.dir/src/data/seed_array.cpp.o CMakeFiles/diamond.dir/src/output/paf_format.cpp.o CMakeFiles/diamond.dir/src/util/system/system.cpp.o CMakeFiles/diamond.dir/src/util/algo/greedy_vortex_cover.cpp.o CMakeFiles/diamond.dir/src/util/sequence/sequence.cpp.o CMakeFiles/diamond.dir/src/tools/tsv_record.cpp.o CMakeFiles/diamond.dir/src/tools/tools.cpp.o CMakeFiles/diamond.dir/src/util/system/getRSS.cpp.o CMakeFiles/diamond.dir/src/util/math/sparse_matrix.cpp.o CMakeFiles/diamond.dir/src/lib/tantan/LambdaCalculator.cc.o CMakeFiles/diamond.dir/src/data/taxonomy_filter.cpp.o CMakeFiles/diamond.dir/src/util/algo/upgma.cpp.o CMakeFiles/diamond.dir/src/util/algo/upgma_mc.cpp.o CMakeFiles/diamond.dir/src/util/algo/edge_vec.cpp.o CMakeFiles/diamond.dir/src/util/string/string.cpp.o CMakeFiles/diamond.dir/src/align/extend.cpp.o CMakeFiles/diamond.dir/src/test/simulate.cpp.o CMakeFiles/diamond.dir/src/test/test.cpp.o CMakeFiles/diamond.dir/src/align/ungapped.cpp.o CMakeFiles/diamond.dir/src/align/gapped.cpp.o CMakeFiles/diamond.dir/src/align/culling.cpp.o CMakeFiles/diamond.dir/src/cluster/medoid.cpp.o CMakeFiles/diamond.dir/src/cluster/cluster_registry.cpp.o CMakeFiles/diamond.dir/src/cluster/multi_step_cluster.cpp.o CMakeFiles/diamond.dir/src/cluster/mcl.cpp.o CMakeFiles/diamond.dir/src/align/output.cpp.o CMakeFiles/diamond.dir/src/tools/roc.cpp.o CMakeFiles/diamond.dir/src/test/data.cpp.o CMakeFiles/diamond.dir/src/test/test_cases.cpp.o CMakeFiles/diamond.dir/src/chaining/smith_waterman.cpp.o CMakeFiles/diamond.dir/src/basic/value.cpp.o CMakeFiles/diamond.dir/src/tools/merge_tsv.cpp.o CMakeFiles/diamond.dir/src/output/xml_format.cpp.o CMakeFiles/diamond.dir/src/align/gapped_filter.cpp.o CMakeFiles/diamond.dir/src/util/parallel/filestack.cpp.o CMakeFiles/diamond.dir/src/util/parallel/parallelizer.cpp.o CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o CMakeFiles/diamond.dir/src/tools/benchmark_io.cpp.o CMakeFiles/diamond.dir/src/align/memory.cpp.o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprob.cpp.o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o CMakeFiles/diamond.dir/src/align/load_hits.cpp.o CMakeFiles/diamond.dir/src/tools/rocid.cpp.o CMakeFiles/diamond.dir/src/lib/blast/blast_seg.cpp.o CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o CMakeFiles/diamond.dir/src/lib/blast/nlm_linear_algebra.cpp.o CMakeFiles/diamond.dir/src/stats/matrices/blosum45.cpp.o CMakeFiles/diamond.dir/src/stats/matrices/blosum50.cpp.o CMakeFiles/diamond.dir/src/stats/matrices/blosum62.cpp.o CMakeFiles/diamond.dir/src/stats/matrices/blosum80.cpp.o CMakeFiles/diamond.dir/src/stats/matrices/blosum90.cpp.o CMakeFiles/diamond.dir/src/stats/matrices/pam250.cpp.o CMakeFiles/diamond.dir/src/stats/matrices/pam30.cpp.o CMakeFiles/diamond.dir/src/stats/matrices/pam70.cpp.o CMakeFiles/diamond.dir/src/stats/stats.cpp.o CMakeFiles/diamond.dir/src/stats/cbs.cpp.o CMakeFiles/diamond.dir/src/stats/comp_based_stats.cpp.o CMakeFiles/diamond.dir/src/stats/hauser_correction.cpp.o CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_swipe.cpp.o CMakeFiles/arch_generic.dir/src/search/stage1.cpp.o CMakeFiles/arch_generic.dir/src/search/stage2.cpp.o CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o CMakeFiles/arch_generic.dir/src/util/tantan.cpp.o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -o diamond -lz -lpthread
-make[3]: Leaving directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[3]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt verlaten
[100%] Built target diamond
-make[2]: Leaving directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[2]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt verlaten
/usr/bin/cmake -E cmake_progress_start /build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu/CMakeFiles 0
-make[1]: Leaving directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[1]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt verlaten
debian/rules override_dh_auto_test
-make[1]: Entering directory '/build/diamond-aligner-2.0.7'
-cd debian/tests && PATH=/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls
-+ mktemp -d
-+ TESTDIR=/tmp/tmp.AImng0ttQ8
-+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.AImng0ttQ8/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.AImng0ttQ8/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.AImng0ttQ8/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.AImng0ttQ8/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.AImng0ttQ8/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.AImng0ttQ8/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.AImng0ttQ8/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.AImng0ttQ8/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.AImng0ttQ8/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.AImng0ttQ8/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.AImng0ttQ8/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.AImng0ttQ8/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.AImng0ttQ8/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.AImng0ttQ8/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.AImng0ttQ8/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.AImng0ttQ8/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.AImng0ttQ8/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.AImng0ttQ8/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.AImng0ttQ8/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.AImng0ttQ8/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
-+ rm -rf /tmp/tmp.AImng0ttQ8
-make[1]: Leaving directory '/build/diamond-aligner-2.0.7'
+make[1]: Map '/build/diamond-aligner-2.0.7' wordt binnengegaan
+cd debian/tests && PATH=/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path sh diamond-calls
+++ mktemp -d
++ TESTDIR=/tmp/tmp.i4Y8sI2C2H
++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.i4Y8sI2C2H/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.i4Y8sI2C2H/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.i4Y8sI2C2H/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.i4Y8sI2C2H/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.i4Y8sI2C2H/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.i4Y8sI2C2H/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.i4Y8sI2C2H/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.i4Y8sI2C2H/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.i4Y8sI2C2H/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.i4Y8sI2C2H/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.i4Y8sI2C2H/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.i4Y8sI2C2H/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.i4Y8sI2C2H/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.i4Y8sI2C2H/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.i4Y8sI2C2H/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.i4Y8sI2C2H/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.i4Y8sI2C2H/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.i4Y8sI2C2H/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.i4Y8sI2C2H/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.i4Y8sI2C2H/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
++ rm -rf /tmp/tmp.i4Y8sI2C2H
+make[1]: Map '/build/diamond-aligner-2.0.7' wordt verlaten
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install
cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/diamond-aligner-2.0.7/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
-make[1]: Entering directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[1]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt binnengegaan
/usr/bin/cmake -S/build/diamond-aligner-2.0.7 -B/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
-make[2]: Entering directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
-make[2]: Nothing to be done for 'preinstall'.
-make[2]: Leaving directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[2]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt binnengegaan
+make[2]: Er hoeft niets gedaan te worden voor 'preinstall'.
+make[2]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt verlaten
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/diamond-aligner-2.0.7/debian/diamond-aligner/usr/bin/diamond
-make[1]: Leaving directory '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu'
+make[1]: Map '/build/diamond-aligner-2.0.7/obj-aarch64-linux-gnu' wordt verlaten
dh_installdocs
dh_installchangelogs
dh_installman
@@ -881,9 +952,9 @@
dh_link
dh_strip_nondeterminism
debian/rules override_dh_compress
-make[1]: Entering directory '/build/diamond-aligner-2.0.7'
+make[1]: Map '/build/diamond-aligner-2.0.7' wordt binnengegaan
dh_compress --exclude=.pdf
-make[1]: Leaving directory '/build/diamond-aligner-2.0.7'
+make[1]: Map '/build/diamond-aligner-2.0.7' wordt verlaten
dh_fixperms
dh_missing
dh_dwz -a
@@ -894,8 +965,8 @@
dh_gencontrol
dh_md5sums
dh_builddeb
-dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.0.7-1_arm64.deb'.
-dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.0.7-1_arm64.deb'.
+dpkg-deb: pakket 'diamond-aligner-dbgsym' wordt gebouwd in '../diamond-aligner-dbgsym_2.0.7-1_arm64.deb'.
+dpkg-deb: pakket 'diamond-aligner' wordt gebouwd in '../diamond-aligner_2.0.7-1_arm64.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../diamond-aligner_2.0.7-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -903,12 +974,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/23362/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/23362/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/26190 and its subdirectories
-I: Current time: Sun Aug 28 08:51:23 -12 2022
-I: pbuilder-time-stamp: 1661719883
+I: removing directory /srv/workspace/pbuilder/23362 and its subdirectories
+I: Current time: Tue Jul 27 04:34:10 +14 2021
+I: pbuilder-time-stamp: 1627310050