Diff of the two buildlogs: -- --- b1/build.log 2021-08-26 05:36:09.100510625 +0000 +++ b2/build.log 2021-08-26 13:41:35.943761856 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Aug 25 09:30:01 -12 2021 -I: pbuilder-time-stamp: 1629927001 +I: Current time: Thu Sep 29 01:59:26 +14 2022 +I: pbuilder-time-stamp: 1664366366 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./gudhi_3.4.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.rasttKdk/trustedkeys.kbx': General error -gpgv: Signature made Thu Jan 21 22:52:38 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.AjfiMYSC/trustedkeys.kbx': General error +gpgv: Signature made Sat Jan 23 00:52:38 2021 +14 gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA gpgv: issuer "gspr@nonempty.org" gpgv: Can't check signature: No public key @@ -34,135 +34,169 @@ dpkg-source: info: applying 0007-Move-towards-reproducible-builds.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/7767/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/368/tmp/hooks/D01_modify_environment starting +debug: Running on codethink13-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/368/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/368/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='7767' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=368 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.150QRsvQBJ/pbuilderrc_fk7v --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.150QRsvQBJ/b1 --logfile b1/build.log gudhi_3.4.1+dfsg-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.150QRsvQBJ/pbuilderrc_nWpc --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.150QRsvQBJ/b2 --logfile b2/build.log gudhi_3.4.1+dfsg-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink12-arm64 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more - -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 20 21:24 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/7767/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Aug 5 2021 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Jul 29 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Jul 29 2021 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Jul 29 2021 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Jul 29 2021 more + -rwsr-xr-x 1 root root 51360 Jul 29 2021 mount + -rwxr-xr-x 1 root root 14496 Jul 29 2021 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 29 01:59 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 24 05:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Jul 29 2021 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Jul 29 2021 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Jul 29 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/368/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -589,7 +623,7 @@ Get: 327 http://deb.debian.org/debian bullseye/main arm64 python3-threadpoolctl all 2.1.0-1 [15.3 kB] Get: 328 http://deb.debian.org/debian bullseye/main arm64 python3-sklearn all 0.23.2-5 [1818 kB] Get: 329 http://deb.debian.org/debian bullseye/main arm64 python3-tk arm64 3.9.2-1 [100 kB] -Fetched 175 MB in 9s (19.5 MB/s) +Fetched 175 MB in 7s (26.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -1930,7 +1964,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/gudhi-3.4.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gudhi_3.4.1+dfsg-1_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/gudhi-3.4.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gudhi_3.4.1+dfsg-1_source.changes dpkg-buildpackage: info: source package gudhi dpkg-buildpackage: info: source version 3.4.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -12891,7 +12926,7 @@ /build/gudhi-3.4.1+dfsg/build/userversion/src/GudhUI/GudhUI_autogen/OTUN7GXZT4/moc_Viewer_instructor.cpp:112: warning: documented symbol 'void * Viewer_instructor::qt_metacast' was not declared or defined. /build/gudhi-3.4.1+dfsg/build/userversion/src/GudhUI/GudhUI_autogen/OTUN7GXZT4/moc_Viewer_instructor.cpp:120: warning: documented symbol 'int Viewer_instructor::qt_metacall' was not declared or defined. error: bib file biblio/how_to_cite_cgal.bib not found! -error opening bib4492.bbl: No such file or directory +error opening bib12669.bbl: No such file or directory bibtex command failed: No such file or directory error: Problems running bibtex. Verify that the command 'perl --version' works from the command line. Exit code: 2 /build/gudhi-3.4.1+dfsg/build/userversion/include/gudhi/GIC.h:546: warning: \cite command to 'Carriere17c' does not have an associated number @@ -13778,15 +13813,15 @@ Start 1: Common_example_vector_double_off_reader 1/178 Test #1: Common_example_vector_double_off_reader ..................................................... Passed 0.01 sec Start 2: Common_example_vector_double_off_reader_diff_files - 2/178 Test #2: Common_example_vector_double_off_reader_diff_files .......................................... Passed 0.00 sec + 2/178 Test #2: Common_example_vector_double_off_reader_diff_files .......................................... Passed 0.01 sec Start 3: Common_example_vector_cgal_3D_off_reader - 3/178 Test #3: Common_example_vector_cgal_3D_off_reader .................................................... Passed 0.01 sec + 3/178 Test #3: Common_example_vector_cgal_3D_off_reader .................................................... Passed 0.02 sec Start 4: Common_example_vector_cgal_off_reader 4/178 Test #4: Common_example_vector_cgal_off_reader ....................................................... Passed 0.01 sec Start 5: Common_test_points_off_reader - 5/178 Test #5: Common_test_points_off_reader ............................................................... Passed 0.01 sec + 5/178 Test #5: Common_test_points_off_reader ............................................................... Passed 0.04 sec Start 6: Common_test_distance_matrix_reader - 6/178 Test #6: Common_test_distance_matrix_reader .......................................................... Passed 0.01 sec + 6/178 Test #6: Common_test_distance_matrix_reader .......................................................... Passed 0.03 sec Start 7: Common_test_persistence_intervals_reader 7/178 Test #7: Common_test_persistence_intervals_reader .................................................... Passed 0.02 sec Start 8: off_file_from_shape_generator_on_sphere_1000_3_15.2 @@ -13794,7 +13829,7 @@ Start 9: off_file_from_shape_generator_in_sphere_100_2 9/178 Test #9: off_file_from_shape_generator_in_sphere_100_2 ............................................... Passed 0.01 sec Start 10: off_file_from_shape_generator_in_cube_10000_3_5.8 - 10/178 Test #10: off_file_from_shape_generator_in_cube_10000_3_5.8 ........................................... Passed 0.08 sec + 10/178 Test #10: off_file_from_shape_generator_in_cube_10000_3_5.8 ........................................... Passed 0.12 sec Start 11: Alpha_complex_example_from_points 11/178 Test #11: Alpha_complex_example_from_points ........................................................... Passed 0.01 sec Start 12: Alpha_complex_example_from_off_60 @@ -13814,61 +13849,61 @@ Start 19: Alpha_complex_example_fast_from_off_32_diff_files 19/178 Test #19: Alpha_complex_example_fast_from_off_32_diff_files ........................................... Passed 0.00 sec Start 20: Alpha_complex_example_weighted_3d_from_points - 20/178 Test #20: Alpha_complex_example_weighted_3d_from_points ............................................... Passed 0.01 sec + 20/178 Test #20: Alpha_complex_example_weighted_3d_from_points ............................................... Passed 0.02 sec Start 21: Alpha_complex_example_3d_from_points 21/178 Test #21: Alpha_complex_example_3d_from_points ........................................................ Passed 0.01 sec Start 22: Weighted_alpha_complex_example_from_points 22/178 Test #22: Weighted_alpha_complex_example_from_points .................................................. Passed 0.01 sec Start 23: Alpha_complex_test_unit - 23/178 Test #23: Alpha_complex_test_unit ..................................................................... Passed 0.02 sec + 23/178 Test #23: Alpha_complex_test_unit ..................................................................... Passed 0.04 sec Start 24: Delaunay_complex_test_unit - 24/178 Test #24: Delaunay_complex_test_unit .................................................................. Passed 0.06 sec + 24/178 Test #24: Delaunay_complex_test_unit .................................................................. Passed 0.07 sec Start 25: Alpha_complex_3d_test_unit 25/178 Test #25: Alpha_complex_3d_test_unit .................................................................. Passed 0.02 sec Start 26: Weighted_alpha_complex_3d_test_unit 26/178 Test #26: Weighted_alpha_complex_3d_test_unit ......................................................... Passed 0.02 sec Start 27: Periodic_alpha_complex_3d_test_unit - 27/178 Test #27: Periodic_alpha_complex_3d_test_unit ......................................................... Passed 5.83 sec + 27/178 Test #27: Periodic_alpha_complex_3d_test_unit ......................................................... Passed 6.02 sec Start 28: Weighted_periodic_alpha_complex_3d_test_unit - 28/178 Test #28: Weighted_periodic_alpha_complex_3d_test_unit ................................................ Passed 82.95 sec + 28/178 Test #28: Weighted_periodic_alpha_complex_3d_test_unit ................................................ Passed 82.28 sec Start 29: Alpha_kernel_d_test_unit 29/178 Test #29: Alpha_kernel_d_test_unit .................................................................... Passed 0.02 sec Start 30: Weighted_alpha_complex_test_unit - 30/178 Test #30: Weighted_alpha_complex_test_unit ............................................................ Passed 0.08 sec + 30/178 Test #30: Weighted_alpha_complex_test_unit ............................................................ Passed 0.07 sec Start 31: Weighted_alpha_complex_non_visible_points_test_unit 31/178 Test #31: Weighted_alpha_complex_non_visible_points_test_unit ......................................... Passed 0.02 sec Start 32: Zero_weighted_alpha_complex_test_unit - 32/178 Test #32: Zero_weighted_alpha_complex_test_unit ....................................................... Passed 0.51 sec + 32/178 Test #32: Zero_weighted_alpha_complex_test_unit ....................................................... Passed 0.59 sec Start 33: Alpha_complex_utilities_safe_alpha_complex_persistence - 33/178 Test #33: Alpha_complex_utilities_safe_alpha_complex_persistence ...................................... Passed 0.15 sec + 33/178 Test #33: Alpha_complex_utilities_safe_alpha_complex_persistence ...................................... Passed 0.20 sec Start 34: Alpha_complex_utilities_fast_alpha_complex_persistence - 34/178 Test #34: Alpha_complex_utilities_fast_alpha_complex_persistence ...................................... Passed 0.14 sec + 34/178 Test #34: Alpha_complex_utilities_fast_alpha_complex_persistence ...................................... Passed 0.16 sec Start 35: Alpha_complex_utilities_exact_alpha_complex_persistence - 35/178 Test #35: Alpha_complex_utilities_exact_alpha_complex_persistence ..................................... Passed 0.58 sec + 35/178 Test #35: Alpha_complex_utilities_exact_alpha_complex_persistence ..................................... Passed 0.54 sec Start 36: Alpha_complex_utilities_diff_exact_alpha_complex 36/178 Test #36: Alpha_complex_utilities_diff_exact_alpha_complex ............................................ Passed 0.00 sec Start 37: Alpha_complex_utilities_diff_fast_alpha_complex 37/178 Test #37: Alpha_complex_utilities_diff_fast_alpha_complex ............................................. Passed 0.00 sec Start 38: Alpha_complex_utilities_alpha_complex_3d - 38/178 Test #38: Alpha_complex_utilities_alpha_complex_3d .................................................... Passed 0.17 sec + 38/178 Test #38: Alpha_complex_utilities_alpha_complex_3d .................................................... Passed 0.20 sec Start 39: Alpha_complex_utilities_exact_alpha_complex_3d - 39/178 Test #39: Alpha_complex_utilities_exact_alpha_complex_3d .............................................. Passed 0.43 sec + 39/178 Test #39: Alpha_complex_utilities_exact_alpha_complex_3d .............................................. Passed 0.44 sec Start 40: Alpha_complex_utilities_fast_alpha_complex_3d - 40/178 Test #40: Alpha_complex_utilities_fast_alpha_complex_3d ............................................... Passed 0.11 sec + 40/178 Test #40: Alpha_complex_utilities_fast_alpha_complex_3d ............................................... Passed 0.15 sec Start 41: Alpha_complex_utilities_diff_exact_alpha_complex_3d 41/178 Test #41: Alpha_complex_utilities_diff_exact_alpha_complex_3d ......................................... Passed 0.00 sec Start 42: Alpha_complex_utilities_diff_fast_alpha_complex_3d 42/178 Test #42: Alpha_complex_utilities_diff_fast_alpha_complex_3d .......................................... Passed 0.00 sec Start 43: Alpha_complex_utilities_periodic_alpha_complex_3d_persistence - 43/178 Test #43: Alpha_complex_utilities_periodic_alpha_complex_3d_persistence ............................... Passed 5.03 sec + 43/178 Test #43: Alpha_complex_utilities_periodic_alpha_complex_3d_persistence ............................... Passed 5.04 sec Start 44: Alpha_complex_utilities_weighted_alpha_complex_3d - 44/178 Test #44: Alpha_complex_utilities_weighted_alpha_complex_3d ........................................... Passed 2.32 sec + 44/178 Test #44: Alpha_complex_utilities_weighted_alpha_complex_3d ........................................... Passed 2.31 sec Start 45: Alpha_complex_utilities_weighted_periodic_alpha_complex_3d - 45/178 Test #45: Alpha_complex_utilities_weighted_periodic_alpha_complex_3d .................................. Passed 9.99 sec + 45/178 Test #45: Alpha_complex_utilities_weighted_periodic_alpha_complex_3d .................................. Passed 10.04 sec Start 46: Bitmap_cubical_complex_example_random - 46/178 Test #46: Bitmap_cubical_complex_example_random ....................................................... Passed 0.16 sec + 46/178 Test #46: Bitmap_cubical_complex_example_random ....................................................... Passed 0.21 sec Start 47: Bitmap_cubical_complex_test_unit - 47/178 Test #47: Bitmap_cubical_complex_test_unit ............................................................ Passed 7.13 sec + 47/178 Test #47: Bitmap_cubical_complex_test_unit ............................................................ Passed 7.22 sec Start 48: Bitmap_cubical_complex_utility_persistence_one_sphere 48/178 Test #48: Bitmap_cubical_complex_utility_persistence_one_sphere ....................................... Passed 0.01 sec Start 49: Bitmap_cubical_complex_utility_persistence_two_sphere @@ -13880,9 +13915,9 @@ Start 52: Bottleneck_distance_example_basic 52/178 Test #52: Bottleneck_distance_example_basic ........................................................... Passed 0.01 sec Start 53: Bottleneck_distance_example_alpha_rips_persistence_bottleneck - 53/178 Test #53: Bottleneck_distance_example_alpha_rips_persistence_bottleneck ............................... Passed 0.61 sec + 53/178 Test #53: Bottleneck_distance_example_alpha_rips_persistence_bottleneck ............................... Passed 0.72 sec Start 54: Bottleneck_distance_test_unit - 54/178 Test #54: Bottleneck_distance_test_unit ............................................................... Passed 0.12 sec + 54/178 Test #54: Bottleneck_distance_test_unit ............................................................... Passed 0.11 sec Start 55: Bottleneck_distance_utilities_Bottleneck_read_file 55/178 Test #55: Bottleneck_distance_utilities_Bottleneck_read_file .......................................... Passed 0.01 sec Start 56: Edge_collapse_example_basic @@ -13890,25 +13925,25 @@ Start 57: Edge_collapse_conserve_persistence_1 57/178 Test #57: Edge_collapse_conserve_persistence_1 ........................................................ Passed 0.01 sec Start 58: Edge_collapse_conserve_persistence_2 - 58/178 Test #58: Edge_collapse_conserve_persistence_2 ........................................................ Passed 1.43 sec + 58/178 Test #58: Edge_collapse_conserve_persistence_2 ........................................................ Passed 1.70 sec Start 59: Collapse_test_unit 59/178 Test #59: Collapse_test_unit .......................................................................... Passed 0.02 sec Start 60: Edge_collapse_utilities_point_cloud_rips_persistence - 60/178 Test #60: Edge_collapse_utilities_point_cloud_rips_persistence ........................................ Passed 0.23 sec + 60/178 Test #60: Edge_collapse_utilities_point_cloud_rips_persistence ........................................ Passed 0.24 sec Start 61: Edge_collapse_utilities_distance_matrix_rips_persistence 61/178 Test #61: Edge_collapse_utilities_distance_matrix_rips_persistence .................................... Passed 0.88 sec Start 62: Edge_collapse_utilities_diff_persistence 62/178 Test #62: Edge_collapse_utilities_diff_persistence .................................................... Passed 0.00 sec Start 63: Contraction_example_tore3D_0.2 - 63/178 Test #63: Contraction_example_tore3D_0.2 .............................................................. Passed 2.73 sec + 63/178 Test #63: Contraction_example_tore3D_0.2 .............................................................. Passed 2.87 sec Start 64: Cech_complex_utility_from_rips_on_tore_3D - 64/178 Test #64: Cech_complex_utility_from_rips_on_tore_3D ................................................... Passed 0.09 sec + 64/178 Test #64: Cech_complex_utility_from_rips_on_tore_3D ................................................... Passed 0.10 sec Start 65: Cech_complex_example_from_points 65/178 Test #65: Cech_complex_example_from_points ............................................................ Passed 0.01 sec Start 66: Cech_complex_test_unit - 66/178 Test #66: Cech_complex_test_unit ...................................................................... Passed 0.01 sec + 66/178 Test #66: Cech_complex_test_unit ...................................................................... Passed 0.02 sec Start 67: Cech_complex_utility_from_rips_on_tore_3D - 67/178 Test #67: Cech_complex_utility_from_rips_on_tore_3D ................................................... Passed 0.06 sec + 67/178 Test #67: Cech_complex_utility_from_rips_on_tore_3D ................................................... Passed 0.05 sec Start 68: Persistence_representations_example_landscape_on_grid 68/178 Test #68: Persistence_representations_example_landscape_on_grid ....................................... Passed 0.01 sec Start 69: Persistence_representations_example_landscape @@ -13922,21 +13957,21 @@ Start 73: Sliced_Wasserstein 73/178 Test #73: Sliced_Wasserstein .......................................................................... Passed 0.01 sec Start 74: Persistence_intervals_test_unit - 74/178 Test #74: Persistence_intervals_test_unit ............................................................. Passed 0.02 sec + 74/178 Test #74: Persistence_intervals_test_unit ............................................................. Passed 0.03 sec Start 75: Vector_representation_test_unit 75/178 Test #75: Vector_representation_test_unit ............................................................. Passed 0.07 sec Start 76: Persistence_lanscapes_test_unit - 76/178 Test #76: Persistence_lanscapes_test_unit ............................................................. Passed 3.21 sec + 76/178 Test #76: Persistence_lanscapes_test_unit ............................................................. Passed 3.81 sec Start 77: Persistence_lanscapes_on_grid_test_unit - 77/178 Test #77: Persistence_lanscapes_on_grid_test_unit ..................................................... Passed 1.39 sec + 77/178 Test #77: Persistence_lanscapes_on_grid_test_unit ..................................................... Passed 1.46 sec Start 78: Persistence_heat_maps_test_unit - 78/178 Test #78: Persistence_heat_maps_test_unit ............................................................. Passed 6.49 sec + 78/178 Test #78: Persistence_heat_maps_test_unit ............................................................. Passed 6.99 sec Start 79: Read_persistence_from_file_test_unit - 79/178 Test #79: Read_persistence_from_file_test_unit ........................................................ Passed 0.02 sec + 79/178 Test #79: Read_persistence_from_file_test_unit ........................................................ Passed 0.01 sec Start 80: kernels_unit - 80/178 Test #80: kernels_unit ................................................................................ Passed 0.01 sec + 80/178 Test #80: kernels_unit ................................................................................ Passed 0.02 sec Start 81: Persistence_intervals_with_distances_test_unit - 81/178 Test #81: Persistence_intervals_with_distances_test_unit .............................................. Passed 0.14 sec + 81/178 Test #81: Persistence_intervals_with_distances_test_unit .............................................. Passed 0.16 sec Start 82: Persistence_representation_utilities_create_pssk 82/178 Test #82: Persistence_representation_utilities_create_pssk ............................................ Passed 0.01 sec Start 83: Persistence_representation_utilities_create_p_h_m_weighted_by_arctan_of_their_persistence @@ -14002,17 +14037,17 @@ Start 113: Persistent_cohomology_example_from_simple_simplex_tree 113/178 Test #113: Persistent_cohomology_example_from_simple_simplex_tree ...................................... Passed 0.01 sec Start 114: Persistent_cohomology_example_from_rips_step_by_step_on_tore_3D -114/178 Test #114: Persistent_cohomology_example_from_rips_step_by_step_on_tore_3D ............................. Passed 0.45 sec +114/178 Test #114: Persistent_cohomology_example_from_rips_step_by_step_on_tore_3D ............................. Passed 0.50 sec Start 115: Persistent_cohomology_example_via_boundary_matrix -115/178 Test #115: Persistent_cohomology_example_via_boundary_matrix ........................................... Passed 4.43 sec +115/178 Test #115: Persistent_cohomology_example_via_boundary_matrix ........................................... Passed 4.09 sec Start 116: Persistent_cohomology_example_multifield_2_71 -116/178 Test #116: Persistent_cohomology_example_multifield_2_71 ............................................... Passed 0.87 sec +116/178 Test #116: Persistent_cohomology_example_multifield_2_71 ............................................... Passed 0.91 sec Start 117: Persistent_cohomology_example_custom_persistence_sort -117/178 Test #117: Persistent_cohomology_example_custom_persistence_sort ....................................... Passed 0.84 sec +117/178 Test #117: Persistent_cohomology_example_custom_persistence_sort ....................................... Passed 0.94 sec Start 118: Persistent_cohomology_test_unit -118/178 Test #118: Persistent_cohomology_test_unit ............................................................. Passed 0.02 sec +118/178 Test #118: Persistent_cohomology_test_unit ............................................................. Passed 0.03 sec Start 119: Persistent_cohomology_test_betti_numbers -119/178 Test #119: Persistent_cohomology_test_betti_numbers .................................................... Passed 0.02 sec +119/178 Test #119: Persistent_cohomology_test_betti_numbers .................................................... Passed 0.01 sec Start 120: Persistent_cohomology_test_unit_multi_field 120/178 Test #120: Persistent_cohomology_test_unit_multi_field ................................................. Passed 0.02 sec Start 121: Rips_complex_example_one_skeleton_from_points @@ -14044,11 +14079,11 @@ Start 134: Rips_complex_utility_from_rips_distance_matrix 134/178 Test #134: Rips_complex_utility_from_rips_distance_matrix .............................................. Passed 0.01 sec Start 135: Rips_complex_utility_from_rips_on_tore_3D -135/178 Test #135: Rips_complex_utility_from_rips_on_tore_3D ................................................... Passed 0.39 sec +135/178 Test #135: Rips_complex_utility_from_rips_on_tore_3D ................................................... Passed 0.62 sec Start 136: Rips_complex_utility_from_rips_correlation_matrix 136/178 Test #136: Rips_complex_utility_from_rips_correlation_matrix ........................................... Passed 0.01 sec Start 137: Sparse_rips_complex_utility_on_tore_3D -137/178 Test #137: Sparse_rips_complex_utility_on_tore_3D ...................................................... Passed 3.70 sec +137/178 Test #137: Sparse_rips_complex_utility_on_tore_3D ...................................................... Passed 4.58 sec Start 138: Simplex_tree_example_from_cliques_of_graph_2 138/178 Test #138: Simplex_tree_example_from_cliques_of_graph_2 ................................................ Passed 0.02 sec Start 139: Simplex_tree_example_from_cliques_of_graph_3 @@ -14056,13 +14091,13 @@ Start 140: Simplex_tree_example_simple_simplex_tree 140/178 Test #140: Simplex_tree_example_simple_simplex_tree .................................................... Passed 0.01 sec Start 141: Simplex_tree_example_mini_simplex_tree -141/178 Test #141: Simplex_tree_example_mini_simplex_tree ...................................................... Passed 0.00 sec +141/178 Test #141: Simplex_tree_example_mini_simplex_tree ...................................................... Passed 0.01 sec Start 142: Simplex_tree_example_cech_complex_cgal_mini_sphere_3d -142/178 Test #142: Simplex_tree_example_cech_complex_cgal_mini_sphere_3d ....................................... Passed 0.13 sec +142/178 Test #142: Simplex_tree_example_cech_complex_cgal_mini_sphere_3d ....................................... Passed 0.16 sec Start 143: Simplex_tree_example_graph_expansion_with_blocker 143/178 Test #143: Simplex_tree_example_graph_expansion_with_blocker ........................................... Passed 0.01 sec Start 144: Simplex_tree_test_unit -144/178 Test #144: Simplex_tree_test_unit ...................................................................... Passed 1.88 sec +144/178 Test #144: Simplex_tree_test_unit ...................................................................... Passed 2.36 sec Start 145: Simplex_tree_remove_test_unit 145/178 Test #145: Simplex_tree_remove_test_unit ............................................................... Passed 0.02 sec Start 146: Simplex_tree_iostream_operator_test_unit @@ -14080,11 +14115,11 @@ Start 152: Skeleton_blocker_test_unit 152/178 Test #152: Skeleton_blocker_test_unit .................................................................. Passed 0.04 sec Start 153: Skeleton_blocker_test_geometric_complex -153/178 Test #153: Skeleton_blocker_test_geometric_complex ..................................................... Passed 0.01 sec +153/178 Test #153: Skeleton_blocker_test_geometric_complex ..................................................... Passed 0.02 sec Start 154: Skeleton_blocker_test_simplifiable -154/178 Test #154: Skeleton_blocker_test_simplifiable .......................................................... Passed 0.02 sec +154/178 Test #154: Skeleton_blocker_test_simplifiable .......................................................... Passed 0.03 sec Start 155: Spatial_searching_example_spatial_searching -155/178 Test #155: Spatial_searching_example_spatial_searching ................................................. Passed 0.02 sec +155/178 Test #155: Spatial_searching_example_spatial_searching ................................................. Passed 0.01 sec Start 156: Spatial_searching_test_Kd_tree_search 156/178 Test #156: Spatial_searching_test_Kd_tree_search ....................................................... Passed 0.02 sec Start 157: Subsampling_example_pick_n_random_points @@ -14098,27 +14133,27 @@ Start 161: Subsampling_test_choose_n_farthest_points 161/178 Test #161: Subsampling_test_choose_n_farthest_points ................................................... Passed 0.03 sec Start 162: Subsampling_test_sparsify_point_set -162/178 Test #162: Subsampling_test_sparsify_point_set ......................................................... Passed 0.01 sec +162/178 Test #162: Subsampling_test_sparsify_point_set ......................................................... Passed 0.02 sec Start 163: Tangential_complex_example_basic -163/178 Test #163: Tangential_complex_example_basic ............................................................ Passed 0.18 sec +163/178 Test #163: Tangential_complex_example_basic ............................................................ Passed 0.16 sec Start 164: Tangential_complex_example_with_perturb -164/178 Test #164: Tangential_complex_example_with_perturb ..................................................... Passed 0.12 sec +164/178 Test #164: Tangential_complex_example_with_perturb ..................................................... Passed 0.11 sec Start 165: Tangential_complex_test_TC -165/178 Test #165: Tangential_complex_test_TC .................................................................. Passed 0.12 sec +165/178 Test #165: Tangential_complex_test_TC .................................................................. Passed 0.13 sec Start 166: Toplex_map_example_simple_toplex_map 166/178 Test #166: Toplex_map_example_simple_toplex_map ........................................................ Passed 0.01 sec Start 167: Toplex_map_unit_test 167/178 Test #167: Toplex_map_unit_test ........................................................................ Passed 0.02 sec Start 168: Lazy_toplex_map_unit_test -168/178 Test #168: Lazy_toplex_map_unit_test ................................................................... Passed 0.02 sec +168/178 Test #168: Lazy_toplex_map_unit_test ................................................................... Passed 0.01 sec Start 169: Witness_complex_example_nearest_landmark_table 169/178 Test #169: Witness_complex_example_nearest_landmark_table .............................................. Passed 0.01 sec Start 170: Witness_complex_example_off_test_torus -170/178 Test #170: Witness_complex_example_off_test_torus ...................................................... Passed 0.21 sec +170/178 Test #170: Witness_complex_example_off_test_torus ...................................................... Passed 0.22 sec Start 171: Witness_complex_example_test_sphere_10 -171/178 Test #171: Witness_complex_example_test_sphere_10 ...................................................... Passed 1.86 sec +171/178 Test #171: Witness_complex_example_test_sphere_10 ...................................................... Passed 1.93 sec Start 172: Witness_complex_example_strong_off_test_torus -172/178 Test #172: Witness_complex_example_strong_off_test_torus ............................................... Passed 0.12 sec +172/178 Test #172: Witness_complex_example_strong_off_test_torus ............................................... Passed 0.11 sec Start 173: Witness_complex_test_simple_witness_complex 173/178 Test #173: Witness_complex_test_simple_witness_complex ................................................. Passed 0.01 sec Start 174: Witness_complex_test_euclidean_simple_witness_complex @@ -14128,13 +14163,13 @@ Start 176: Witness_complex_weak_test_torus_persistence 176/178 Test #176: Witness_complex_weak_test_torus_persistence ................................................. Passed 0.13 sec Start 177: Nerve_GIC_example_CoordGIC -177/178 Test #177: Nerve_GIC_example_CoordGIC .................................................................. Passed 3.07 sec +177/178 Test #177: Nerve_GIC_example_CoordGIC .................................................................. Passed 5.65 sec Start 178: Nerve_GIC_test_unit 178/178 Test #178: Nerve_GIC_test_unit ......................................................................... Passed 0.02 sec 100% tests passed, 0 tests failed out of 178 -Total Test time (real) = 153.30 sec +Total Test time (real) = 159.35 sec make[2]: Leaving directory '/build/gudhi-3.4.1+dfsg/build/userversion' for py3ver in 3.9 ; do \ dh_auto_test --buildsystem=cmake --no-parallel --no-parallel --builddirectory=build-py$py3ver/userversion ; \ @@ -14145,53 +14180,53 @@ /usr/bin/ctest --force-new-ctest-process -j1 Test project /build/gudhi-3.4.1+dfsg/build-py3.9/userversion Start 1: Common_test_points_off_reader - 1/79 Test #1: Common_test_points_off_reader ........................................................ Passed 0.01 sec + 1/79 Test #1: Common_test_points_off_reader ........................................................ Passed 0.03 sec Start 2: Common_test_distance_matrix_reader - 2/79 Test #2: Common_test_distance_matrix_reader ................................................... Passed 0.01 sec + 2/79 Test #2: Common_test_distance_matrix_reader ................................................... Passed 0.03 sec Start 3: Common_test_persistence_intervals_reader - 3/79 Test #3: Common_test_persistence_intervals_reader ............................................. Passed 0.02 sec + 3/79 Test #3: Common_test_persistence_intervals_reader ............................................. Passed 0.04 sec Start 4: Alpha_complex_test_unit - 4/79 Test #4: Alpha_complex_test_unit .............................................................. Passed 0.04 sec + 4/79 Test #4: Alpha_complex_test_unit .............................................................. Passed 0.05 sec Start 5: Delaunay_complex_test_unit - 5/79 Test #5: Delaunay_complex_test_unit ........................................................... Passed 0.07 sec + 5/79 Test #5: Delaunay_complex_test_unit ........................................................... Passed 0.09 sec Start 6: Alpha_complex_3d_test_unit 6/79 Test #6: Alpha_complex_3d_test_unit ........................................................... Passed 0.03 sec Start 7: Weighted_alpha_complex_3d_test_unit - 7/79 Test #7: Weighted_alpha_complex_3d_test_unit .................................................. Passed 0.02 sec + 7/79 Test #7: Weighted_alpha_complex_3d_test_unit .................................................. Passed 0.04 sec Start 8: Periodic_alpha_complex_3d_test_unit - 8/79 Test #8: Periodic_alpha_complex_3d_test_unit .................................................. Passed 5.98 sec + 8/79 Test #8: Periodic_alpha_complex_3d_test_unit .................................................. Passed 6.21 sec Start 9: Weighted_periodic_alpha_complex_3d_test_unit - 9/79 Test #9: Weighted_periodic_alpha_complex_3d_test_unit ......................................... Passed 82.62 sec + 9/79 Test #9: Weighted_periodic_alpha_complex_3d_test_unit ......................................... Passed 83.55 sec Start 10: Alpha_kernel_d_test_unit 10/79 Test #10: Alpha_kernel_d_test_unit ............................................................. Passed 0.02 sec Start 11: Weighted_alpha_complex_test_unit -11/79 Test #11: Weighted_alpha_complex_test_unit ..................................................... Passed 0.08 sec +11/79 Test #11: Weighted_alpha_complex_test_unit ..................................................... Passed 0.07 sec Start 12: Weighted_alpha_complex_non_visible_points_test_unit 12/79 Test #12: Weighted_alpha_complex_non_visible_points_test_unit .................................. Passed 0.02 sec Start 13: Zero_weighted_alpha_complex_test_unit -13/79 Test #13: Zero_weighted_alpha_complex_test_unit ................................................ Passed 0.53 sec +13/79 Test #13: Zero_weighted_alpha_complex_test_unit ................................................ Passed 0.63 sec Start 14: Bitmap_cubical_complex_test_unit -14/79 Test #14: Bitmap_cubical_complex_test_unit ..................................................... Passed 7.13 sec +14/79 Test #14: Bitmap_cubical_complex_test_unit ..................................................... Passed 7.28 sec Start 15: Bottleneck_distance_test_unit -15/79 Test #15: Bottleneck_distance_test_unit ........................................................ Passed 0.14 sec +15/79 Test #15: Bottleneck_distance_test_unit ........................................................ Passed 0.10 sec Start 16: Collapse_test_unit 16/79 Test #16: Collapse_test_unit ................................................................... Passed 0.02 sec Start 17: Cech_complex_test_unit 17/79 Test #17: Cech_complex_test_unit ............................................................... Passed 0.02 sec Start 18: Persistence_intervals_test_unit -18/79 Test #18: Persistence_intervals_test_unit ...................................................... Passed 0.02 sec +18/79 Test #18: Persistence_intervals_test_unit ...................................................... Passed 0.03 sec Start 19: Vector_representation_test_unit -19/79 Test #19: Vector_representation_test_unit ...................................................... Passed 0.06 sec +19/79 Test #19: Vector_representation_test_unit ...................................................... Passed 0.07 sec Start 20: Persistence_lanscapes_test_unit -20/79 Test #20: Persistence_lanscapes_test_unit ...................................................... Passed 3.24 sec +20/79 Test #20: Persistence_lanscapes_test_unit ...................................................... Passed 3.90 sec Start 21: Persistence_lanscapes_on_grid_test_unit -21/79 Test #21: Persistence_lanscapes_on_grid_test_unit .............................................. Passed 1.37 sec +21/79 Test #21: Persistence_lanscapes_on_grid_test_unit .............................................. Passed 1.43 sec Start 22: Persistence_heat_maps_test_unit -22/79 Test #22: Persistence_heat_maps_test_unit ...................................................... Passed 6.65 sec +22/79 Test #22: Persistence_heat_maps_test_unit ...................................................... Passed 7.84 sec Start 23: Read_persistence_from_file_test_unit -23/79 Test #23: Read_persistence_from_file_test_unit ................................................. Passed 0.01 sec +23/79 Test #23: Read_persistence_from_file_test_unit ................................................. Passed 0.02 sec Start 24: kernels_unit -24/79 Test #24: kernels_unit ......................................................................... Passed 0.02 sec +24/79 Test #24: kernels_unit ......................................................................... Passed 0.01 sec Start 25: Persistence_intervals_with_distances_test_unit 25/79 Test #25: Persistence_intervals_with_distances_test_unit ....................................... Passed 0.14 sec Start 26: Persistent_cohomology_test_unit @@ -14203,7 +14238,7 @@ Start 29: Rips_complex_test_unit 29/79 Test #29: Rips_complex_test_unit ............................................................... Passed 0.02 sec Start 30: Simplex_tree_test_unit -30/79 Test #30: Simplex_tree_test_unit ............................................................... Passed 1.89 sec +30/79 Test #30: Simplex_tree_test_unit ............................................................... Passed 2.04 sec Start 31: Simplex_tree_remove_test_unit 31/79 Test #31: Simplex_tree_remove_test_unit ........................................................ Passed 0.02 sec Start 32: Simplex_tree_iostream_operator_test_unit @@ -14213,9 +14248,9 @@ Start 34: Simplex_tree_make_filtration_non_decreasing_test_unit 34/79 Test #34: Simplex_tree_make_filtration_non_decreasing_test_unit ................................ Passed 0.01 sec Start 35: Skeleton_blocker_test_unit -35/79 Test #35: Skeleton_blocker_test_unit ........................................................... Passed 0.04 sec +35/79 Test #35: Skeleton_blocker_test_unit ........................................................... Passed 0.05 sec Start 36: Skeleton_blocker_test_geometric_complex -36/79 Test #36: Skeleton_blocker_test_geometric_complex .............................................. Passed 0.02 sec +36/79 Test #36: Skeleton_blocker_test_geometric_complex .............................................. Passed 0.01 sec Start 37: Skeleton_blocker_test_simplifiable 37/79 Test #37: Skeleton_blocker_test_simplifiable ................................................... Passed 0.03 sec Start 38: Spatial_searching_test_Kd_tree_search @@ -14225,11 +14260,11 @@ Start 40: Subsampling_test_choose_n_farthest_points 40/79 Test #40: Subsampling_test_choose_n_farthest_points ............................................ Passed 0.03 sec Start 41: Subsampling_test_sparsify_point_set -41/79 Test #41: Subsampling_test_sparsify_point_set .................................................. Passed 0.02 sec +41/79 Test #41: Subsampling_test_sparsify_point_set .................................................. Passed 0.01 sec Start 42: Tangential_complex_test_TC 42/79 Test #42: Tangential_complex_test_TC ........................................................... Passed 0.11 sec Start 43: Toplex_map_unit_test -43/79 Test #43: Toplex_map_unit_test ................................................................. Passed 0.01 sec +43/79 Test #43: Toplex_map_unit_test ................................................................. Passed 0.02 sec Start 44: Lazy_toplex_map_unit_test 44/79 Test #44: Lazy_toplex_map_unit_test ............................................................ Passed 0.02 sec Start 45: Witness_complex_test_simple_witness_complex @@ -14237,75 +14272,75 @@ Start 46: Witness_complex_test_euclidean_simple_witness_complex 46/79 Test #46: Witness_complex_test_euclidean_simple_witness_complex ................................ Passed 0.02 sec Start 47: Nerve_GIC_test_unit -47/79 Test #47: Nerve_GIC_test_unit .................................................................. Passed 0.03 sec +47/79 Test #47: Nerve_GIC_test_unit .................................................................. Passed 0.02 sec Start 48: alpha_rips_persistence_bottleneck_distance_py_test -48/79 Test #48: alpha_rips_persistence_bottleneck_distance_py_test ................................... Passed 0.69 sec +48/79 Test #48: alpha_rips_persistence_bottleneck_distance_py_test ................................... Passed 0.75 sec Start 49: tangential_complex_plain_homology_from_off_file_example_py_test -49/79 Test #49: tangential_complex_plain_homology_from_off_file_example_py_test ...................... Passed 0.85 sec +49/79 Test #49: tangential_complex_plain_homology_from_off_file_example_py_test ...................... Passed 0.82 sec Start 50: test_tangential_complex_py_test -50/79 Test #50: test_tangential_complex_py_test ...................................................... Passed 1.23 sec +50/79 Test #50: test_tangential_complex_py_test ...................................................... Passed 1.36 sec Start 51: euclidean_strong_witness_complex_diagram_persistence_from_off_file_example_py_test -51/79 Test #51: euclidean_strong_witness_complex_diagram_persistence_from_off_file_example_py_test ... Passed 0.61 sec +51/79 Test #51: euclidean_strong_witness_complex_diagram_persistence_from_off_file_example_py_test ... Passed 0.62 sec Start 52: euclidean_witness_complex_diagram_persistence_from_off_file_example_py_test -52/79 Test #52: euclidean_witness_complex_diagram_persistence_from_off_file_example_py_test .......... Passed 0.60 sec +52/79 Test #52: euclidean_witness_complex_diagram_persistence_from_off_file_example_py_test .......... Passed 0.64 sec Start 53: test_subsampling_py_test -53/79 Test #53: test_subsampling_py_test ............................................................. Passed 1.29 sec +53/79 Test #53: test_subsampling_py_test ............................................................. Passed 1.28 sec Start 54: bottleneck_basic_example_py_test -54/79 Test #54: bottleneck_basic_example_py_test ..................................................... Passed 0.56 sec +54/79 Test #54: bottleneck_basic_example_py_test ..................................................... Passed 0.60 sec Start 55: test_bottleneck_distance_py_test -55/79 Test #55: test_bottleneck_distance_py_test ..................................................... Passed 1.19 sec +55/79 Test #55: test_bottleneck_distance_py_test ..................................................... Passed 1.24 sec Start 56: alpha_complex_from_points_example_py_test -56/79 Test #56: alpha_complex_from_points_example_py_test ............................................ Passed 0.56 sec +56/79 Test #56: alpha_complex_from_points_example_py_test ............................................ Passed 0.58 sec Start 57: alpha_complex_diagram_persistence_from_off_file_example_py_test -57/79 Test #57: alpha_complex_diagram_persistence_from_off_file_example_py_test ...................... Passed 0.68 sec +57/79 Test #57: alpha_complex_diagram_persistence_from_off_file_example_py_test ...................... Passed 0.76 sec Start 58: test_alpha_complex_py_test -58/79 Test #58: test_alpha_complex_py_test ........................................................... Passed 1.33 sec +58/79 Test #58: test_alpha_complex_py_test ........................................................... Passed 1.34 sec Start 59: test_euclidean_witness_complex_py_test -59/79 Test #59: test_euclidean_witness_complex_py_test ............................................... Passed 1.23 sec +59/79 Test #59: test_euclidean_witness_complex_py_test ............................................... Passed 1.24 sec Start 60: periodic_cubical_complex_barcode_persistence_from_perseus_file_example_py_test -60/79 Test #60: periodic_cubical_complex_barcode_persistence_from_perseus_file_example_py_test ....... Passed 0.61 sec +60/79 Test #60: periodic_cubical_complex_barcode_persistence_from_perseus_file_example_py_test ....... Passed 0.60 sec Start 61: random_cubical_complex_persistence_example_py_test -61/79 Test #61: random_cubical_complex_persistence_example_py_test ................................... Passed 0.63 sec +61/79 Test #61: random_cubical_complex_persistence_example_py_test ................................... Passed 0.74 sec Start 62: test_cubical_complex_py_test -62/79 Test #62: test_cubical_complex_py_test ......................................................... Passed 1.36 sec +62/79 Test #62: test_cubical_complex_py_test ......................................................... Passed 1.34 sec Start 63: rips_complex_diagram_persistence_from_distance_matrix_file_example_py_test -63/79 Test #63: rips_complex_diagram_persistence_from_distance_matrix_file_example_py_test ........... Passed 0.59 sec +63/79 Test #63: rips_complex_diagram_persistence_from_distance_matrix_file_example_py_test ........... Passed 0.60 sec Start 64: rips_complex_diagram_persistence_from_off_file_example_py_test -64/79 Test #64: rips_complex_diagram_persistence_from_off_file_example_py_test ....................... Passed 0.61 sec +64/79 Test #64: rips_complex_diagram_persistence_from_off_file_example_py_test ....................... Passed 0.62 sec Start 65: rips_complex_from_points_example_py_test -65/79 Test #65: rips_complex_from_points_example_py_test ............................................. Passed 0.57 sec +65/79 Test #65: rips_complex_from_points_example_py_test ............................................. Passed 0.58 sec Start 66: test_rips_complex_py_test -66/79 Test #66: test_rips_complex_py_test ............................................................ Passed 1.26 sec +66/79 Test #66: test_rips_complex_py_test ............................................................ Passed 1.31 sec Start 67: simplex_tree_example_py_test -67/79 Test #67: simplex_tree_example_py_test ......................................................... Passed 0.58 sec +67/79 Test #67: simplex_tree_example_py_test ......................................................... Passed 0.60 sec Start 68: test_simplex_tree_py_test -68/79 Test #68: test_simplex_tree_py_test ............................................................ Passed 1.54 sec +68/79 Test #68: test_simplex_tree_py_test ............................................................ Passed 1.50 sec Start 69: test_simplex_generators_py_test -69/79 Test #69: test_simplex_generators_py_test ...................................................... Passed 1.22 sec +69/79 Test #69: test_simplex_generators_py_test ...................................................... Passed 1.24 sec Start 70: witness_complex_from_nearest_landmark_table_py_test -70/79 Test #70: witness_complex_from_nearest_landmark_table_py_test .................................. Passed 0.57 sec +70/79 Test #70: witness_complex_from_nearest_landmark_table_py_test .................................. Passed 0.60 sec Start 71: test_witness_complex_py_test 71/79 Test #71: test_witness_complex_py_test ......................................................... Passed 1.22 sec Start 72: test_reader_utils_py_test -72/79 Test #72: test_reader_utils_py_test ............................................................ Passed 1.27 sec +72/79 Test #72: test_reader_utils_py_test ............................................................ Passed 1.53 sec Start 73: test_wasserstein_distance_py_test -73/79 Test #73: test_wasserstein_distance_py_test .................................................... Passed 1.88 sec +73/79 Test #73: test_wasserstein_distance_py_test .................................................... Passed 2.01 sec Start 74: test_wasserstein_barycenter_py_test -74/79 Test #74: test_wasserstein_barycenter_py_test .................................................. Passed 1.80 sec +74/79 Test #74: test_wasserstein_barycenter_py_test .................................................. Passed 1.79 sec Start 75: test_representations_py_test -75/79 Test #75: test_representations_py_test ......................................................... Passed 9.21 sec +75/79 Test #75: test_representations_py_test ......................................................... Passed 9.86 sec Start 76: test_time_delay_py_test 76/79 Test #76: test_time_delay_py_test .............................................................. Passed 1.23 sec Start 77: test_tomato_py_test -77/79 Test #77: test_tomato_py_test .................................................................. Passed 4.09 sec +77/79 Test #77: test_tomato_py_test .................................................................. Passed 4.11 sec Start 78: test_weighted_rips_complex_py_test 78/79 Test #78: test_weighted_rips_complex_py_test ................................................... Passed 1.47 sec Start 79: test_dtm_rips_complex_py_test -79/79 Test #79: test_dtm_rips_complex_py_test ........................................................ Passed 1.44 sec +79/79 Test #79: test_dtm_rips_complex_py_test ........................................................ Passed 1.40 sec 100% tests passed, 0 tests failed out of 79 -Total Test time (real) = 154.78 sec +Total Test time (real) = 159.91 sec make[2]: Leaving directory '/build/gudhi-3.4.1+dfsg/build-py3.9/userversion' make[1]: Leaving directory '/build/gudhi-3.4.1+dfsg' create-stamp debian/debhelper-build-stamp @@ -14623,11 +14658,11 @@ dpkg-gencontrol: warning: package python3-gudhi: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=cmake -O--no-parallel dh_builddeb -O--buildsystem=cmake -O--no-parallel -dpkg-deb: building package 'libgudhi-doc' in '../libgudhi-doc_3.4.1+dfsg-1_all.deb'. dpkg-deb: building package 'libgudhi-dev' in '../libgudhi-dev_3.4.1+dfsg-1_all.deb'. -dpkg-deb: building package 'python3-gudhi-dbgsym' in '../python3-gudhi-dbgsym_3.4.1+dfsg-1_arm64.deb'. -dpkg-deb: building package 'gudhi-utils-dbgsym' in '../gudhi-utils-dbgsym_3.4.1+dfsg-1_arm64.deb'. dpkg-deb: building package 'gudhui-dbgsym' in '../gudhui-dbgsym_3.4.1+dfsg-1_arm64.deb'. +dpkg-deb: building package 'gudhi-utils-dbgsym' in '../gudhi-utils-dbgsym_3.4.1+dfsg-1_arm64.deb'. +dpkg-deb: building package 'libgudhi-doc' in '../libgudhi-doc_3.4.1+dfsg-1_all.deb'. +dpkg-deb: building package 'python3-gudhi-dbgsym' in '../python3-gudhi-dbgsym_3.4.1+dfsg-1_arm64.deb'. dpkg-deb: building package 'libgudhi-examples' in '../libgudhi-examples_3.4.1+dfsg-1_all.deb'. dpkg-deb: building package 'gudhi-utils' in '../gudhi-utils_3.4.1+dfsg-1_arm64.deb'. dpkg-deb: building package 'python3-gudhi' in '../python3-gudhi_3.4.1+dfsg-1_arm64.deb'. @@ -14639,12 +14674,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/368/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/368/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/7767 and its subdirectories -I: Current time: Wed Aug 25 17:36:07 -12 2021 -I: pbuilder-time-stamp: 1629956167 +I: removing directory /srv/workspace/pbuilder/368 and its subdirectories +I: Current time: Thu Sep 29 10:04:34 +14 2022 +I: pbuilder-time-stamp: 1664395474