Diff of the two buildlogs: -- --- b1/build.log 2021-07-22 18:22:12.452819916 +0000 +++ b2/build.log 2021-07-22 18:50:06.982367019 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Aug 24 12:15:29 -12 2022 -I: pbuilder-time-stamp: 1661386529 +I: Current time: Fri Jul 23 08:22:16 +14 2021 +I: pbuilder-time-stamp: 1626978136 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./lambda-align_1.0.3-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.MspxgZGB/trustedkeys.kbx': General error -gpgv: Signature made Sat Feb 8 03:33:49 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.DzvxoIlR/trustedkeys.kbx': General error +gpgv: Signature made Sun Feb 9 05:33:49 2020 +14 gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lambda-align_1.0.3-6.dsc @@ -29,135 +29,169 @@ dpkg-source: info: applying force-link-rt-pthread.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/21544/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/25130/tmp/hooks/D01_modify_environment starting +debug: Running on codethink12-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/25130/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/25130/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='21544' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=25130 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.sZ2HTkx8Yx/pbuilderrc_5zie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.sZ2HTkx8Yx/b1 --logfile b1/build.log lambda-align_1.0.3-6.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.sZ2HTkx8Yx/pbuilderrc_Mr7v --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.sZ2HTkx8Yx/b2 --logfile b2/build.log --extrapackages usrmerge lambda-align_1.0.3-6.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink13-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Feb 7 2021 more - -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount - -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 23 03:48 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Feb 7 2021 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/21544/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Feb 8 04:38 more + -rwsr-xr-x 1 root root 51360 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 14496 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 23 08:22 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 21 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Feb 8 04:38 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/25130/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -257,7 +291,7 @@ Get: 52 http://deb.debian.org/debian bullseye/main arm64 libseqan2-dev all 2.4.0+dfsg-14 [1220 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1k-1 [829 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] -Fetched 28.3 MB in 1s (35.2 MB/s) +Fetched 28.3 MB in 1s (45.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -492,9 +526,42 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1434 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25627 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-6_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-6_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-6 dpkg-buildpackage: info: source distribution unstable @@ -573,12 +640,12 @@ make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= -Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/depend.internal". -Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/depend.internal". Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/depend.internal". Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/depend.internal". -Scanning dependencies of target lambda +Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/depend.internal". +Dependee "/build/lambda-align-1.0.3/build/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/depend.internal". Scanning dependencies of target lambda_indexer +Scanning dependencies of target lambda make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Leaving directory '/build/lambda-align-1.0.3/build' @@ -589,16 +656,16 @@ cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/lambda-align-1.0.3/src/lambda.cpp [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/lambda-align-1.0.3/src/lambda_indexer.cpp -In file included from /build/lambda-align-1.0.3/src/lambda.cpp:32: -/build/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 323 | setDate(parser, __DATE__); - | ^~~~~~~~ In file included from /build/lambda-align-1.0.3/src/misc.hpp:34, from /build/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ +In file included from /build/lambda-align-1.0.3/src/lambda.cpp:32: +/build/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 323 | setDate(parser, __DATE__); + | ^~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]' @@ -1592,169 +1659,169 @@ cd build/tests && ctest 8 Test project /build/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa - 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.57 sec + 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.48 sec Start 2: test_mkindex_blastn_fm - 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.65 sec + 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.63 sec Start 3: test_mkindex_blastp_sa - 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.20 sec + 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.23 sec Start 4: test_mkindex_blastp_fm - 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.26 sec + 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.20 sec Start 5: test_mkindex_blastx_sa - 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.22 sec + 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.20 sec Start 6: test_mkindex_blastx_fm - 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.29 sec + 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.23 sec Start 7: test_mkindex_tblastn_sa - 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.96 sec + 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.90 sec Start 8: test_mkindex_tblastn_fm - 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.32 sec + 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.02 sec Start 9: test_mkindex_tblastx_sa - 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.11 sec + 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.79 sec Start 10: test_mkindex_tblastx_fm -10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.46 sec +10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.06 sec Start 11: test_search_blastn_sa_m0 -11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 4.79 sec +11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 4.45 sec Start 12: test_search_blastn_sa_m8 -12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 4.06 sec +12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 3.50 sec Start 13: test_search_blastn_sa_m9 -13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 4.08 sec +13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 4.19 sec Start 14: test_search_blastn_sa_sam -14/80 Test #14: test_search_blastn_sa_sam ........ Passed 4.40 sec +14/80 Test #14: test_search_blastn_sa_sam ........ Passed 3.70 sec Start 15: test_search_blastn_sa_bam -15/80 Test #15: test_search_blastn_sa_bam ........ Passed 4.93 sec +15/80 Test #15: test_search_blastn_sa_bam ........ Passed 3.68 sec Start 16: test_search_blastn_sa_m9.gz -16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 4.21 sec +16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 3.79 sec Start 17: test_search_blastn_sa_sam.bz2 -17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 6.03 sec +17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 5.98 sec Start 18: test_search_blastn_fm_m0 -18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 4.65 sec +18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 4.43 sec Start 19: test_search_blastn_fm_m8 -19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 3.84 sec +19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 3.51 sec Start 20: test_search_blastn_fm_m9 -20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 4.13 sec +20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 3.96 sec Start 21: test_search_blastn_fm_sam -21/80 Test #21: test_search_blastn_fm_sam ........ Passed 4.07 sec +21/80 Test #21: test_search_blastn_fm_sam ........ Passed 3.93 sec Start 22: test_search_blastn_fm_bam -22/80 Test #22: test_search_blastn_fm_bam ........ Passed 4.09 sec +22/80 Test #22: test_search_blastn_fm_bam ........ Passed 4.25 sec Start 23: test_search_blastn_fm_m9.gz -23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 4.28 sec +23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 4.08 sec Start 24: test_search_blastn_fm_sam.bz2 -24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 6.22 sec +24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 6.11 sec Start 25: test_search_blastp_sa_m0 -25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.70 sec +25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.58 sec Start 26: test_search_blastp_sa_m8 -26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.74 sec +26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.66 sec Start 27: test_search_blastp_sa_m9 -27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.64 sec +27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.65 sec Start 28: test_search_blastp_sa_sam -28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.58 sec +28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.63 sec Start 29: test_search_blastp_sa_bam -29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.77 sec +29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.56 sec Start 30: test_search_blastp_sa_m9.gz -30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.76 sec +30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.57 sec Start 31: test_search_blastp_sa_sam.bz2 -31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.76 sec +31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.72 sec Start 32: test_search_blastp_fm_m0 -32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.75 sec +32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.60 sec Start 33: test_search_blastp_fm_m8 -33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.66 sec +33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.59 sec Start 34: test_search_blastp_fm_m9 -34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.62 sec +34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.66 sec Start 35: test_search_blastp_fm_sam -35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.68 sec +35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.66 sec Start 36: test_search_blastp_fm_bam -36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.72 sec +36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.65 sec Start 37: test_search_blastp_fm_m9.gz -37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.79 sec +37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.74 sec Start 38: test_search_blastp_fm_sam.bz2 -38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.85 sec +38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.74 sec Start 39: test_search_blastx_sa_m0 -39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 2.42 sec +39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 2.08 sec Start 40: test_search_blastx_sa_m8 -40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 2.21 sec +40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 1.86 sec Start 41: test_search_blastx_sa_m9 -41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 2.23 sec +41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 1.83 sec Start 42: test_search_blastx_sa_sam -42/80 Test #42: test_search_blastx_sa_sam ........ Passed 2.24 sec +42/80 Test #42: test_search_blastx_sa_sam ........ Passed 2.21 sec Start 43: test_search_blastx_sa_bam -43/80 Test #43: test_search_blastx_sa_bam ........ Passed 2.53 sec +43/80 Test #43: test_search_blastx_sa_bam ........ Passed 2.07 sec Start 44: test_search_blastx_sa_m9.gz -44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 2.33 sec +44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 2.26 sec Start 45: test_search_blastx_sa_sam.bz2 -45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 3.68 sec +45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 3.44 sec Start 46: test_search_blastx_fm_m0 -46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.23 sec +46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.24 sec Start 47: test_search_blastx_fm_m8 -47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.07 sec +47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.04 sec Start 48: test_search_blastx_fm_m9 -48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 1.98 sec +48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.02 sec Start 49: test_search_blastx_fm_sam -49/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.16 sec +49/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.09 sec Start 50: test_search_blastx_fm_bam -50/80 Test #50: test_search_blastx_fm_bam ........ Passed 2.41 sec +50/80 Test #50: test_search_blastx_fm_bam ........ Passed 2.07 sec Start 51: test_search_blastx_fm_m9.gz -51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.20 sec +51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.00 sec Start 52: test_search_blastx_fm_sam.bz2 -52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 3.46 sec +52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 3.41 sec Start 53: test_search_tblastn_sa_m0 -53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 2.52 sec +53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 2.26 sec Start 54: test_search_tblastn_sa_m8 -54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 2.28 sec +54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 2.18 sec Start 55: test_search_tblastn_sa_m9 -55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 2.25 sec +55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 2.02 sec Start 56: test_search_tblastn_sa_sam -56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.22 sec +56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.23 sec Start 57: test_search_tblastn_sa_bam -57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.46 sec +57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.10 sec Start 58: test_search_tblastn_sa_m9.gz -58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.39 sec +58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.33 sec Start 59: test_search_tblastn_sa_sam.bz2 -59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.36 sec +59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 2.88 sec Start 60: test_search_tblastn_fm_m0 -60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.55 sec +60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.28 sec Start 61: test_search_tblastn_fm_m8 61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.26 sec Start 62: test_search_tblastn_fm_m9 62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 2.26 sec Start 63: test_search_tblastn_fm_sam -63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.50 sec +63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.11 sec Start 64: test_search_tblastn_fm_bam -64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.54 sec +64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.25 sec Start 65: test_search_tblastn_fm_m9.gz -65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.64 sec +65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.13 sec Start 66: test_search_tblastn_fm_sam.bz2 -66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 3.60 sec +66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 3.03 sec Start 67: test_search_tblastx_sa_m0 -67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 9.37 sec +67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 8.70 sec Start 68: test_search_tblastx_sa_m8 -68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 8.09 sec +68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 7.56 sec Start 69: test_search_tblastx_sa_m9 -69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 8.19 sec +69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 7.83 sec Start 70: test_search_tblastx_sa_sam -70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 8.82 sec +70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 8.02 sec Start 71: test_search_tblastx_sa_bam -71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 10.73 sec +71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 8.21 sec Start 72: test_search_tblastx_sa_m9.gz -72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 8.72 sec +72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 7.78 sec Start 73: test_search_tblastx_sa_sam.bz2 -73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 15.92 sec +73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 14.27 sec Start 74: test_search_tblastx_fm_m0 -74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 8.60 sec +74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 8.36 sec Start 75: test_search_tblastx_fm_m8 -75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 7.38 sec +75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 6.95 sec Start 76: test_search_tblastx_fm_m9 -76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 7.48 sec +76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 7.29 sec Start 77: test_search_tblastx_fm_sam -77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 8.01 sec +77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 7.75 sec Start 78: test_search_tblastx_fm_bam -78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 7.90 sec +78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 8.70 sec Start 79: test_search_tblastx_fm_m9.gz -79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 8.03 sec +79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 7.77 sec Start 80: test_search_tblastx_fm_sam.bz2 -80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 15.13 sec +80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 14.77 sec 100% tests passed, 0 tests failed out of 80 -Total Test time (real) = 283.25 sec +Total Test time (real) = 262.33 sec make[1]: Leaving directory '/build/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary @@ -1775,17 +1842,17 @@ make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/lambda-align-1.0.3/build' +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build +make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' -make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. -make[3]: Leaving directory '/build/lambda-align-1.0.3/build' +make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build -[ 50%] Built target lambda make[3]: Entering directory '/build/lambda-align-1.0.3/build' -make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. +make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/lambda-align-1.0.3/build' -[100%] Built target lambda_indexer +[ 50%] Built target lambda_indexer +[100%] Built target lambda make[2]: Leaving directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall @@ -1852,12 +1919,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/25130/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/25130/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/21544 and its subdirectories -I: Current time: Wed Aug 24 12:45:11 -12 2022 -I: pbuilder-time-stamp: 1661388311 +I: removing directory /srv/workspace/pbuilder/25130 and its subdirectories +I: Current time: Fri Jul 23 08:50:05 +14 2021 +I: pbuilder-time-stamp: 1626979805