Diff of the two buildlogs: -- --- b1/build.log 2021-08-15 12:46:36.126678446 +0000 +++ b2/build.log 2021-08-15 13:21:28.235890194 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Aug 15 00:27:56 -12 2021 -I: pbuilder-time-stamp: 1629030476 +I: Current time: Sun Sep 18 09:09:43 +14 2022 +I: pbuilder-time-stamp: 1663441783 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./libbpp-phyl_2.4.1-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.Zd4nHJx2/trustedkeys.kbx': General error -gpgv: Signature made Wed Jul 22 22:05:46 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.qYasGJUR/trustedkeys.kbx': General error +gpgv: Signature made Fri Jul 24 00:05:46 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,169 @@ dpkg-source: info: applying remove_test_likelihood_nh.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13163/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32367/tmp/hooks/D01_modify_environment starting +debug: Running on codethink13-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32367/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32367/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13163' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32367 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NWIjdKsZkR/pbuilderrc_TTFW --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NWIjdKsZkR/b1 --logfile b1/build.log libbpp-phyl_2.4.1-4.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NWIjdKsZkR/pbuilderrc_pbWW --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NWIjdKsZkR/b2 --logfile b2/build.log --extrapackages usrmerge libbpp-phyl_2.4.1-4.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink10-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more - -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 14 21:25 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/13163/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Aug 5 2021 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Jul 29 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Jul 29 2021 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Jul 29 2021 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Jul 29 2021 more + -rwsr-xr-x 1 root root 51360 Jul 29 2021 mount + -rwxr-xr-x 1 root root 14496 Jul 29 2021 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 18 09:09 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 18 05:48 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Jul 29 2021 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Jul 29 2021 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Jul 29 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/32367/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -255,7 +289,7 @@ Get: 53 http://deb.debian.org/debian bullseye/main arm64 libbpp-core-dev arm64 2.4.1-5 [902 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libbpp-seq12 arm64 2.4.1-5 [442 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libbpp-seq-dev arm64 2.4.1-5 [721 kB] -Fetched 28.6 MB in 1s (51.2 MB/s) +Fetched 28.6 MB in 2s (16.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -490,8 +524,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1298 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25001 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/libbpp-phyl-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-phyl_2.4.1-4_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/libbpp-phyl-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbpp-phyl_2.4.1-4_source.changes dpkg-buildpackage: info: source package libbpp-phyl dpkg-buildpackage: info: source version 2.4.1-4 dpkg-buildpackage: info: source distribution unstable @@ -541,45 +612,41 @@ make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/depend make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/depend make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/src /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-static.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/src /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-shared.dir/DependInfo.cmake --color= -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-static.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-static.dir/depend.internal". +make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/src /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-static.dir/DependInfo.cmake --color= Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-shared.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-shared.dir/depend.internal". Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-shared.dir/depend.internal". +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-static.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-static.dir/depend.internal". Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-phyl-static.dir/depend.internal". Scanning dependencies of target bpp-phyl-static make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/build -Scanning dependencies of target bpp-phyl-shared -make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/build make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +Scanning dependencies of target bpp-phyl-shared [ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o +make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp +make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/build [ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o -make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/BipartitionList.cpp -[ 1%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o +[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o +[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o +[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o +[ 1%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/BipartitionTools.cpp -[ 1%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp -[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/BioNJ.cpp cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/DistanceEstimation.cpp -[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp +make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp [ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/NeighborJoining.cpp [ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/PGMA.cpp -[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/BipartitionTools.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o @@ -590,438 +657,449 @@ cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp -[ 5%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp -[ 5%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o +[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 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object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp -[ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o +[ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat 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src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp -[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o +[ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o 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CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /build/libbpp-phyl-2.4.1/src/Bpp/Phyl/Likelihood/RASTools.cpp -[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o +[ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o 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/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood_clock.dir/DependInfo.cmake --color= -make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/depend -make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_models.dir/DependInfo.cmake --color= +make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/depend +make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_detailed_simulations.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_detailed_simulations.dir/depend.internal". -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_parsimony.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_parsimony.dir/depend.internal". Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_detailed_simulations.dir/depend.internal". -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_parsimony.dir/depend.internal". -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_bowker.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_bowker.dir/depend.internal". -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_bowker.dir/depend.internal". -Scanning dependencies of target test_parsimony +make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood_clock.dir/DependInfo.cmake --color= +make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build Scanning dependencies of target test_detailed_simulations -make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/build -make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -Scanning dependencies of target test_bowker -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_models.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_models.dir/depend.internal". Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping.dir/depend.internal". -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_models.dir/depend.internal". Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping.dir/depend.internal". +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood.dir/depend.internal". +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood.dir/depend.internal". make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -Scanning dependencies of target test_models -make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build +make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/build -make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/build make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/depend make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake --color= +make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/depend make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood.dir/depend.internal". -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood.dir/depend.internal". +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_models.dir/DependInfo.cmake --color= +Scanning dependencies of target test_likelihood +make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/build make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping_codon.dir/depend.internal". -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping_codon.dir/depend.internal". -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood_clock.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood_clock.dir/depend.internal". -Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood_clock.dir/depend.internal". +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_parsimony.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_parsimony.dir/depend.internal". +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_parsimony.dir/depend.internal". Scanning dependencies of target test_mapping make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood_clock.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood_clock.dir/depend.internal". +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_likelihood_clock.dir/depend.internal". make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/build -[ 92%] Building CXX object test/CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -[ 92%] Building CXX object test/CMakeFiles/test_models.dir/test_models.cpp.o +Scanning dependencies of target test_parsimony +make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +[ 93%] Building CXX object test/CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o +[ 94%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o +[ 94%] Building CXX object test/CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_likelihood.cpp +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping_codon.dir/depend.internal". +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_mapping_codon.dir/depend.internal". +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_bowker.cpp +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_detailed_simulations.cpp +make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/build make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_models.dir/test_models.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_models.cpp -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_parsimony.cpp Scanning dependencies of target test_likelihood_clock -Scanning dependencies of target test_likelihood make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/build -make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/build make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_models.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_models.dir/depend.internal". +Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_models.dir/depend.internal". +make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +Scanning dependencies of target test_models +make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/build make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' Scanning dependencies of target test_mapping_codon make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/build -make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -[ 93%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_bowker.cpp -[ 93%] Building CXX object test/CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -[ 93%] Building CXX object test/CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_detailed_simulations.cpp +[ 94%] Building CXX object test/CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_likelihood_clock.cpp -[ 93%] Building CXX object test/CMakeFiles/test_mapping.dir/test_mapping.cpp.o +make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +[ 94%] Building CXX object test/CMakeFiles/test_models.dir/test_models.cpp.o +[ 94%] Building CXX object test/CMakeFiles/test_mapping.dir/test_mapping.cpp.o +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_models.dir/test_models.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_models.cpp cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_mapping.dir/test_mapping.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_mapping.cpp -[ 93%] Building CXX object test/CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o +[ 94%] Building CXX object test/CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o +[ 94%] Building CXX object test/CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_parsimony.cpp cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_mapping_codon.cpp -[ 94%] Building CXX object test/CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_likelihood.cpp [ 94%] Linking CXX executable test_models cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_models.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_models.dir/test_models.cpp.o -o test_models -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 @@ -1357,43 +1428,43 @@ make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' [ 95%] Building CXX object test/CMakeFiles/test_simulations.dir/test_simulations.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_simulations.dir/test_simulations.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_simulations.cpp -[ 96%] Linking CXX executable test_nhx -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_nhx.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_nhx.dir/test_nhx.cpp.o -o test_nhx -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -[ 96%] Linking CXX executable test_likelihood +[ 95%] Linking CXX executable test_likelihood cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -o test_likelihood -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -[ 97%] Linking CXX executable test_likelihood_clock +[ 96%] Linking CXX executable test_likelihood_clock cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood_clock.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -o test_likelihood_clock -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -[ 97%] Built target test_nhx +[ 96%] Built target test_likelihood make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/depend make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_tree.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_tree.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_tree.dir/depend.internal". Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_tree.dir/depend.internal". Scanning dependencies of target test_tree make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/build -[ 97%] Built target test_likelihood make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +[ 96%] Building CXX object test/CMakeFiles/test_tree.dir/test_tree.cpp.o +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_tree.dir/test_tree.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_tree.cpp +make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +[ 96%] Built target test_likelihood_clock make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/depend make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_tree_getpath.dir/DependInfo.cmake --color= -[ 97%] Building CXX object test/CMakeFiles/test_tree.dir/test_tree.cpp.o -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_tree.dir/test_tree.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_tree.cpp Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_tree_getpath.dir/DependInfo.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_tree_getpath.dir/depend.internal". Dependee "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_tree_getpath.dir/depend.internal". Scanning dependencies of target test_tree_getpath make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/build make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -[ 98%] Building CXX object test/CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o +[ 97%] Building CXX object test/CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_tree_getpath.cpp +[ 98%] Linking CXX executable test_nhx +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_nhx.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_nhx.dir/test_nhx.cpp.o -o test_nhx -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -[ 98%] Built target test_likelihood_clock +[ 98%] Built target test_nhx make -f test/CMakeFiles/test_tree_rootat.dir/build.make test/CMakeFiles/test_tree_rootat.dir/depend make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-phyl-2.4.1 /build/libbpp-phyl-2.4.1/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_tree_rootat.dir/DependInfo.cmake --color= @@ -1405,26 +1476,26 @@ make[3]: Entering directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' [ 98%] Building CXX object test/CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-phyl-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o -c /build/libbpp-phyl-2.4.1/test/test_tree_rootat.cpp -[ 98%] Linking CXX executable test_bowker -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -[ 98%] Built target test_bowker [ 99%] Linking CXX executable test_mapping_codon cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping_codon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -o test_mapping_codon -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' [ 99%] Built target test_mapping_codon +[ 99%] Linking CXX executable test_detailed_simulations +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_detailed_simulations.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -o test_detailed_simulations -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' +[ 99%] Built target test_detailed_simulations [ 99%] Linking CXX executable test_tree_getpath cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree_getpath.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -o test_tree_getpath -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' [ 99%] Built target test_tree_getpath -[ 99%] Linking CXX executable test_detailed_simulations -cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_detailed_simulations.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -o test_detailed_simulations -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +[ 99%] Linking CXX executable test_bowker +cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -[ 99%] Built target test_detailed_simulations +[ 99%] Built target test_bowker [ 99%] Linking CXX executable test_mapping cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_mapping.dir/test_mapping.cpp.o -o test_mapping -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 @@ -1434,9 +1505,9 @@ cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree_rootat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o -o test_tree_rootat -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' -[100%] Built target test_tree_rootat [100%] Linking CXX executable test_tree cd /build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree.dir/link.txt --verbose=1 +[100%] Built target test_tree_rootat /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-phyl-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree.dir/test_tree.cpp.o -o test_tree -Wl,-rpath,/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' [100%] Built target test_tree @@ -1462,28 +1533,28 @@ Start 6: test_mapping_codon Start 7: test_models Start 8: test_nhx - 1/13 Test #8: test_nhx ......................... Passed 0.04 sec + 1/13 Test #8: test_nhx ......................... Passed 0.10 sec Start 9: test_parsimony - 2/13 Test #4: test_likelihood_clock ............ Passed 0.10 sec + 2/13 Test #9: test_parsimony ................... Passed 0.08 sec Start 10: test_simulations - 3/13 Test #9: test_parsimony ................... Passed 0.06 sec + 3/13 Test #4: test_likelihood_clock ............ Passed 0.26 sec Start 11: test_tree - 4/13 Test #3: test_likelihood .................. Passed 0.19 sec + 4/13 Test #7: test_models ...................... Passed 0.48 sec Start 12: test_tree_getpath - 5/13 Test #7: test_models ...................... Passed 0.21 sec + 5/13 Test #3: test_likelihood .................. Passed 0.54 sec Start 13: test_tree_rootat - 6/13 Test #12: test_tree_getpath ................ Passed 0.06 sec - 7/13 Test #13: test_tree_rootat ................. Passed 0.27 sec - 8/13 Test #2: test_detailed_simulations ........ Passed 1.88 sec - 9/13 Test #5: test_mapping ..................... Passed 4.10 sec -10/13 Test #11: test_tree ........................ Passed 7.66 sec -11/13 Test #6: test_mapping_codon ............... Passed 31.31 sec -12/13 Test #10: test_simulations ................. Passed 63.87 sec -13/13 Test #1: test_bowker ...................... Passed 99.31 sec + 6/13 Test #12: test_tree_getpath ................ Passed 0.08 sec + 7/13 Test #13: test_tree_rootat ................. Passed 0.61 sec + 8/13 Test #2: test_detailed_simulations ........ Passed 4.00 sec + 9/13 Test #5: test_mapping ..................... Passed 8.14 sec +10/13 Test #11: test_tree ........................ Passed 14.16 sec +11/13 Test #6: test_mapping_codon ............... Passed 43.59 sec +12/13 Test #10: test_simulations ................. Passed 45.26 sec +13/13 Test #1: test_bowker ...................... Passed 109.52 sec 100% tests passed, 0 tests failed out of 13 -Total Test time (real) = 99.31 sec +Total Test time (real) = 109.53 sec make[1]: Leaving directory '/build/libbpp-phyl-2.4.1/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep @@ -1783,9 +1854,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libbpp-phyl12' in '../libbpp-phyl12_2.4.1-4_arm64.deb'. dpkg-deb: building package 'libbpp-phyl-dev' in '../libbpp-phyl-dev_2.4.1-4_arm64.deb'. dpkg-deb: building package 'libbpp-phyl12-dbgsym' in '../libbpp-phyl12-dbgsym_2.4.1-4_arm64.deb'. +dpkg-deb: building package 'libbpp-phyl12' in '../libbpp-phyl12_2.4.1-4_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbpp-phyl_2.4.1-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1793,12 +1864,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/32367/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/32367/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13163 and its subdirectories -I: Current time: Sun Aug 15 00:46:35 -12 2021 -I: pbuilder-time-stamp: 1629031595 +I: removing directory /srv/workspace/pbuilder/32367 and its subdirectories +I: Current time: Sun Sep 18 09:44:26 +14 2022 +I: pbuilder-time-stamp: 1663443866