Diff of the two buildlogs: -- --- b1/build.log 2021-07-16 19:01:42.889963958 +0000 +++ b2/build.log 2021-07-16 19:03:12.630611481 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Aug 18 13:23:00 -12 2022 -I: pbuilder-time-stamp: 1660872180 +I: Current time: Sat Jul 17 09:02:11 +14 2021 +I: pbuilder-time-stamp: 1626462131 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./libgo-perl_0.15-9.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.OQIyt0FZ/trustedkeys.kbx': General error -gpgv: Signature made Sat Jan 9 03:39:52 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.agsQndMo/trustedkeys.kbx': General error +gpgv: Signature made Sun Jan 10 05:39:52 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -35,135 +35,169 @@ dpkg-source: info: applying spelling2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/5729/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/15969/tmp/hooks/D01_modify_environment starting +debug: Running on codethink16-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/15969/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/15969/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='5729' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=15969 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.aeJVkGmOTT/pbuilderrc_4OJD --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.aeJVkGmOTT/b1 --logfile b1/build.log libgo-perl_0.15-9.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.aeJVkGmOTT/pbuilderrc_xYtp --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.aeJVkGmOTT/b2 --logfile b2/build.log --extrapackages usrmerge libgo-perl_0.15-9.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink11-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Feb 7 2021 more - -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount - -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 18 03:47 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Feb 7 2021 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/5729/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Feb 8 04:38 more + -rwsr-xr-x 1 root root 51360 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 14496 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 17 09:02 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 16 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Feb 8 04:38 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/15969/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -287,7 +321,7 @@ Get: 72 http://deb.debian.org/debian bullseye/main arm64 libxml-writer-perl all 0.900-1 [29.9 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 rename all 1.13-1 [18.0 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 xsltproc arm64 1.1.34-4 [124 kB] -Fetched 25.0 MB in 1s (28.4 MB/s) +Fetched 25.0 MB in 1s (39.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -615,8 +649,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1225 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24063 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgo-perl_0.15-9_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libgo-perl_0.15-9_source.changes dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-9 dpkg-buildpackage: info: source distribution unstable @@ -640,122 +711,122 @@ dh_auto_build make -j8 make[1]: Entering directory '/build/libgo-perl-0.15' -cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm -cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm -cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm -cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm -cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm -cp GO/Basic.pm blib/lib/GO/Basic.pm -cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm -cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm -cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm -cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm +cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm -cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm -cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm -cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm -cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm -cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm +cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm +cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm +cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm +cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm +cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm +cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm +cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm -cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm +cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm +cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm +cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm +cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm +cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm -cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm -cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm -cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm -cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm +cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm +cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm -cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm -cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm -cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm +cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm +cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm +cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm +cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm +cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm +cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm -cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm +cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm +cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm -cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm +cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm +cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm +cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm +cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm +cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm +cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm +cp GO/Basic.pm blib/lib/GO/Basic.pm +cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm +cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm -cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm -cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm -cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm -cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm -cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm -cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm -cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm -cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm -cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm -cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm -cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm -cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm -cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm -cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm +cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm +cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm cp GO/Parser.pm blib/lib/GO/Parser.pm -cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm -cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm -cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm -cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm -cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm -cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm +cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm -cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm -cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm -cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm -cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm -cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm -cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm -cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm -cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm -cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm -cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm -cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm -cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm -cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm +cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm +cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm +cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm +cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm +cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm -cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm -cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm -cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm +cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm +cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm +cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm +cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm +cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm +cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm +cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm +cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm +cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm +cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm +cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm +cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm +cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm +cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm +cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm +cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm +cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm +cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm +cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm +cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm +cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm -cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl -cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl -cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl -cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl -cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm +cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm +cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl +cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl +cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl +cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl +cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl +cp go-perl.pod blib/lib/go-perl.pod cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl -cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl cp GO/Utils.pm blib/lib/GO/Utils.pm -cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl -cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm -cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl -cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm -cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm +cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl -cp go-perl.pod blib/lib/go-perl.pod -cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl -cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl +cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm +cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl +cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl +cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl +cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm +cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm cp scripts/go-apply-xslt blib/script/go-apply-xslt -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl cp scripts/go-export-graph.pl blib/script/go-export-graph.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl cp scripts/go2chadoxml blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml @@ -790,9 +861,9 @@ cp scripts/go2tbl blib/script/go2tbl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl cp scripts/go2text_html blib/script/go2text_html -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html cp scripts/go2xml blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim Manifying 10 pod documents @@ -806,8 +877,8 @@ t/t010build.t ............ 1..6 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:52 2022 -# Current time GMT: Fri Aug 19 01:23:52 2022 +# Current time local: Sat Jul 17 09:02:55 2021 +# Current time GMT: Fri Jul 16 19:02:55 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -819,8 +890,8 @@ t/t020paths.t ............ 1..7 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:52 2022 -# Current time GMT: Fri Aug 19 01:23:52 2022 +# Current time local: Sat Jul 17 09:02:55 2021 +# Current time GMT: Fri Jul 16 19:02:55 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -833,8 +904,8 @@ t/t030detecterror.t ...... 1..4 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:52 2022 -# Current time GMT: Fri Aug 19 01:23:52 2022 +# Current time local: Sat Jul 17 09:02:55 2021 +# Current time GMT: Fri Jul 16 19:02:55 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -876,234 +947,234 @@ t/t050oboformat.t ........ 1..6 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:52 2022 -# Current time GMT: Fri Aug 19 01:23:52 2022 +# Current time local: Sat Jul 17 09:02:55 2021 +# Current time GMT: Fri Jul 16 19:02:55 2021 # Using Test.pm version 1.31 ok 1 ok 2 -ROOT: biological_process ROOT: cellular_component +ROOT: biological_process ROOT: molecular_function ok 3 ok 4 -EDGE|GO:0003677|GO:0003676|is_a -EDGE|GO:0003676|GO:0003674|is_a -EDGE|GO:0043025|GO:0005623|part_of -EDGE|GO:0005933|GO:0005623|part_of -EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0005623|GO:0005575|is_a -EDGE|GO:0003678|GO:0004386|is_a -EDGE|GO:0003678|GO:0003677|is_a -EDGE|GO:0003834|GO:0003824|is_a -EDGE|GO:0008464|GO:0003824|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0000144|GO:0000142|part_of +EDGE|GO:0000144|GO:0030481|is_a +EDGE|GO:0000144|GO:0000142|part_of +EDGE|GO:0000142|GO:0005935|part_of +EDGE|GO:0000142|GO:0030480|is_a +EDGE|GO:0003703|GO:0003702|is_a +EDGE|GO:0000299|GO:0005624|is_a +EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0000267|GO:0005623|part_of -EDGE|GO:0003708|GO:0003706|is_a -EDGE|GO:0003708|GO:0004879|is_a -EDGE|GO:0008534|GO:0008578|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0008488|GO:0003824|is_a +EDGE|GO:0003686|GO:0003824|is_a +EDGE|GO:0008336|GO:0003824|is_a +EDGE|GO:0003833|GO:0003824|is_a +EDGE|GO:0003908|GO:0003824|is_a +EDGE|GO:0003905|GO:0003824|is_a +EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a -EDGE|GO:0000133|GO:0005935|part_of -EDGE|GO:0000142|GO:0005935|part_of -EDGE|GO:0005935|GO:0000134|is_a -EDGE|GO:0005935|GO:0005933|part_of +EDGE|GO:0003840|GO:0003824|is_a +EDGE|GO:0003832|GO:0003824|is_a +EDGE|GO:0008111|GO:0003824|is_a +EDGE|GO:0003834|GO:0003824|is_a +EDGE|GO:0008461|GO:0003824|is_a +EDGE|GO:0003837|GO:0003824|is_a +EDGE|GO:0003826|GO:0003824|is_a +EDGE|GO:0003825|GO:0003824|is_a +EDGE|GO:0003839|GO:0003824|is_a +EDGE|GO:0008416|GO:0003824|is_a +EDGE|GO:0008578|GO:0003824|is_a +EDGE|GO:0003906|GO:0003824|is_a +EDGE|GO:0008464|GO:0003824|is_a +EDGE|GO:0003824|GO:0003674|is_a +EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0003707|GO:0003706|is_a +EDGE|GO:0003707|GO:0004879|is_a +EDGE|GO:0008111|GO:0003824|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0003826|GO:0003824|is_a +EDGE|GO:0000133|GO:0005934|part_of +EDGE|GO:0000133|GO:0005935|part_of +EDGE|GO:0000133|GO:0005938|part_of +EDGE|GO:0000133|GO:0005934|part_of +EDGE|GO:0005934|GO:0005933|part_of +EDGE|GO:0005934|GO:0000134|is_a +EDGE|GO:0008159|GO:0003711|is_a 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Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:53 2022 -# Current time GMT: Fri Aug 19 01:23:53 2022 +# Current time local: Sat Jul 17 09:02:55 2021 +# Current time GMT: Fri Jul 16 19:02:55 2021 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 -ROOT: root +ROOT: Part of ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase +ROOT: root ROOT: 1-phosphatidylinositol-4-phosphate kinase -ROOT: Part of TERMS: 29 DEFXREFS:GO:curators -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0042595|GO:0042594|is_a +EDGE|GO:0042595|GO:0007631|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0042596|is_a +EDGE|GO:0001662|GO:0007610|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0042630|GO:0009414|is_a +DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0048149|GO:0030534|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008343|GO:0007631|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a +SYNS:behaviour +DEFXREFS:WB:ems|ISBN:0395448956 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a -DEFXREFS:GO:ai +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0048266|GO:0048265|is_a +DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a -EDGE|GO:0008344|GO:0030534|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0009414|is_a -EDGE|GO:0042630|GO:0007610|is_a +DEFXREFS:GO:jic +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007636|GO:0007635|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a -DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0048150|GO:0030534|is_a -DEFXREFS:GO:jic +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a +SYNS:fake synonym|class I PI3K|FAKE:0001 +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:GO:curators +EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a -DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a -SYNS:behaviour -DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0007610|GO:0008150|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0035094|is_a EDGE|GO:0035095|GO:0030534|is_a -DEFXREFS:GO:jic|ISBN:0198606907 +DEFXREFS:GO:ai EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0048265|is_a -EDGE|GO:0048266|GO:0007610|is_a -SYNS:fake synonym|FAKE:0001|class I PI3K -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0001662|GO:0042596|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1247,112 +1318,112 @@ ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 -ROOT: root -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: 1-phosphatidylinositol-4-phosphate kinase +ROOT: root ROOT: Part of +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:GO:curators EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:mah|ISBN:0877797099 +SYNS:class I PI3K|FAKE:0001|fake synonym +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0035094|is_a EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0042630|GO:0009414|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:ai EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0048265|is_a -EDGE|GO:0048266|GO:0007610|is_a -SYNS:fake synonym|FAKE:0001|class I PI3K -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0009414|is_a +EDGE|GO:0042630|GO:0007610|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a +DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0048148|GO:0030534|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a +DEFXREFS:GO:mah|ISBN:0877797099 +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1376,112 +1447,112 @@ ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 -ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: Part of ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase +ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: root TERMS: 29 -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0035094|is_a -EDGE|GO:0035095|GO:0030534|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008343|GO:0030534|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0048266|GO:0048265|is_a -SYNS:class I PI3K|FAKE:0001|fake synonym -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a -DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048150|GO:0045472|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0001662|GO:0007610|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a +DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0048148|GO:0030534|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:GO:ai EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0042595|GO:0042594|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0009414|is_a -EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0008344|GO:0007626|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:curators EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a +SYNS:fake synonym|class I PI3K|FAKE:0001 +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048150|GO:0045472|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a -DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0042755|GO:0007631|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0048266|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0045471|is_a -EDGE|GO:0048149|GO:0030534|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007628|GO:0008344|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1505,8 +1576,8 @@ t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:54 2022 -# Current time GMT: Fri Aug 19 01:23:54 2022 +# Current time local: Sat Jul 17 09:02:56 2021 +# Current time GMT: Fri Jul 16 19:02:56 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1898,8 +1969,8 @@ t/t080gofmt2.t ........... 1..3 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:54 2022 -# Current time GMT: Fri Aug 19 01:23:54 2022 +# Current time local: Sat Jul 17 09:02:56 2021 +# Current time GMT: Fri Jul 16 19:02:56 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1953,8 +2024,8 @@ t/t100roundtrip.t ........ 1..2 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:55 2022 -# Current time GMT: Fri Aug 19 01:23:55 2022 +# Current time local: Sat Jul 17 09:02:57 2021 +# Current time GMT: Fri Jul 16 19:02:57 2021 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml @@ -1982,8 +2053,8 @@ t/t110basic.t ............ 1..4 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:57 2022 -# Current time GMT: Fri Aug 19 01:23:57 2022 +# Current time local: Sat Jul 17 09:02:58 2021 +# Current time GMT: Fri Jul 16 19:02:58 2021 # Using Test.pm version 1.31 GO:0016604 GO:0016604 @@ -2001,8 +2072,8 @@ t/t130relations.t ........ 1..7 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:57 2022 -# Current time GMT: Fri Aug 19 01:23:57 2022 +# Current time local: Sat Jul 17 09:02:59 2021 +# Current time GMT: Fri Jul 16 19:02:59 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2016,8 +2087,8 @@ t/t140subgraph.t ......... 1..1 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:58 2022 -# Current time GMT: Fri Aug 19 01:23:58 2022 +# Current time local: Sat Jul 17 09:02:59 2021 +# Current time GMT: Fri Jul 16 19:02:59 2021 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 @@ -2029,8 +2100,8 @@ t/t150xref.t ............. 1..2 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:58 2022 -# Current time GMT: Fri Aug 19 01:23:58 2022 +# Current time local: Sat Jul 17 09:02:59 2021 +# Current time GMT: Fri Jul 16 19:02:59 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2038,8 +2109,8 @@ t/t160logicaldef.t ....... 1..5 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:59 2022 -# Current time GMT: Fri Aug 19 01:23:59 2022 +# Current time local: Sat Jul 17 09:03:00 2021 +# Current time GMT: Fri Jul 16 19:03:00 2021 # Using Test.pm version 1.31 ok 1 ns: biological_process @@ -2055,8 +2126,8 @@ t/t170chadoxml.t ......... 1..9 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:23:59 2022 -# Current time GMT: Fri Aug 19 01:23:59 2022 +# Current time local: Sat Jul 17 09:03:00 2021 +# Current time GMT: Fri Jul 16 19:03:00 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2071,8 +2142,8 @@ t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:24:00 2022 -# Current time GMT: Fri Aug 19 01:24:00 2022 +# Current time local: Sat Jul 17 09:03:00 2021 +# Current time GMT: Fri Jul 16 19:03:00 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2087,8 +2158,8 @@ t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:24:00 2022 -# Current time GMT: Fri Aug 19 01:24:00 2022 +# Current time local: Sat Jul 17 09:03:01 2021 +# Current time GMT: Fri Jul 16 19:03:01 2021 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 @@ -2100,8 +2171,8 @@ t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:24:01 2022 -# Current time GMT: Fri Aug 19 01:24:01 2022 +# Current time local: Sat Jul 17 09:03:02 2021 +# Current time GMT: Fri Jul 16 19:03:02 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2109,8 +2180,8 @@ t/t210cache.t ............ 1..6 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:24:02 2022 -# Current time GMT: Fri Aug 19 01:24:02 2022 +# Current time local: Sat Jul 17 09:03:02 2021 +# Current time GMT: Fri Jul 16 19:03:02 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2122,8 +2193,8 @@ t/t220xref_esc.t ......... 1..6 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:24:02 2022 -# Current time GMT: Fri Aug 19 01:24:02 2022 +# Current time local: Sat Jul 17 09:03:02 2021 +# Current time GMT: Fri Jul 16 19:03:02 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2137,8 +2208,8 @@ t/t230term_expression.t .. 1..1 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:24:03 2022 -# Current time GMT: Fri Aug 19 01:24:03 2022 +# Current time local: Sat Jul 17 09:03:02 2021 +# Current time GMT: Fri Jul 16 19:03:02 2021 # Using Test.pm version 1.31 @@ -2233,8 +2304,8 @@ t/t240ga2obj.t ........... 1..3 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:24:03 2022 -# Current time GMT: Fri Aug 19 01:24:03 2022 +# Current time local: Sat Jul 17 09:03:03 2021 +# Current time GMT: Fri Jul 16 19:03:03 2021 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2243,8 +2314,8 @@ t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:24:03 2022 -# Current time GMT: Fri Aug 19 01:24:03 2022 +# Current time local: Sat Jul 17 09:03:03 2021 +# Current time GMT: Fri Jul 16 19:03:03 2021 # Using Test.pm version 1.31 @@ -2296,8 +2367,8 @@ t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:24:04 2022 -# Current time GMT: Fri Aug 19 01:24:04 2022 +# Current time local: Sat Jul 17 09:03:03 2021 +# Current time GMT: Fri Jul 16 19:03:03 2021 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ @@ -2345,8 +2416,8 @@ t/t290disjoint.t ......... 1..2 # Running under perl version 5.032001 for linux -# Current time local: Thu Aug 18 13:24:05 2022 -# Current time GMT: Fri Aug 19 01:24:05 2022 +# Current time local: Sat Jul 17 09:03:04 2021 +# Current time GMT: Fri Jul 16 19:03:04 2021 # Using Test.pm version 1.31 ok 1 GO:0009987 @@ -2354,7 +2425,7 @@ ok 2 ok All tests successful. -Files=24, Tests=140, 14 wallclock secs ( 0.32 usr 0.08 sys + 12.13 cusr 0.80 csys = 13.33 CPU) +Files=24, Tests=140, 9 wallclock secs ( 0.25 usr 0.06 sys + 8.73 cusr 0.62 csys = 9.66 CPU) Result: PASS make[1]: Leaving directory '/build/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp @@ -2367,107 +2438,107 @@ Manifying 33 pod documents Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p @@ -2550,30 +2621,30 @@ Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl make[1]: Leaving directory '/build/libgo-perl-0.15' debian/rules override_dh_install @@ -2603,12 +2674,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/15969/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/15969/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/5729 and its subdirectories -I: Current time: Thu Aug 18 13:24:16 -12 2022 -I: pbuilder-time-stamp: 1660872256 +I: removing directory /srv/workspace/pbuilder/15969 and its subdirectories +I: Current time: Sat Jul 17 09:03:11 +14 2021 +I: pbuilder-time-stamp: 1626462191