Diff of the two buildlogs: -- --- b1/build.log 2021-07-28 04:30:19.717883898 +0000 +++ b2/build.log 2021-07-28 04:46:56.040573399 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Aug 29 22:47:12 -12 2022 -I: pbuilder-time-stamp: 1661856432 +I: Current time: Wed Jul 28 18:30:24 +14 2021 +I: pbuilder-time-stamp: 1627446624 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./libpwizlite_3.0.3-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.5p3MQ3ct/trustedkeys.kbx': General error -gpgv: Signature made Tue Oct 20 21:21:24 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.Ap7bHeID/trustedkeys.kbx': General error +gpgv: Signature made Wed Oct 21 23:21:24 2020 +14 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpwizlite_3.0.3-1.dsc @@ -26,135 +26,169 @@ dpkg-source: info: unpacking libpwizlite_3.0.3-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/16964/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20810/tmp/hooks/D01_modify_environment starting +debug: Running on codethink16-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20810/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20810/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='16964' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=20810 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.cKz06pWnoU/pbuilderrc_JMES --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.cKz06pWnoU/b1 --logfile b1/build.log libpwizlite_3.0.3-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.cKz06pWnoU/pbuilderrc_A2qb --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.cKz06pWnoU/b2 --logfile b2/build.log --extrapackages usrmerge libpwizlite_3.0.3-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink13-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Feb 7 2021 more - -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount - -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 29 03:47 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Feb 7 2021 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/16964/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Feb 8 04:38 more + -rwsr-xr-x 1 root root 51360 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 14496 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 28 18:30 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 26 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Feb 8 04:38 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/20810/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -301,7 +335,7 @@ Get: 91 http://deb.debian.org/debian bullseye/main arm64 python3-roman all 2.0.0-5 [9064 B] Get: 92 http://deb.debian.org/debian bullseye/main arm64 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] -Fetched 56.4 MB in 1s (54.0 MB/s) +Fetched 56.4 MB in 1s (51.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -709,9 +743,42 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1602 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41719 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/libpwizlite-3.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpwizlite_3.0.3-1_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/libpwizlite-3.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpwizlite_3.0.3-1_source.changes dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.3-1 dpkg-buildpackage: info: source distribution unstable @@ -1279,138 +1346,34 @@ cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.3 /build/libpwizlite-3.0.3/src /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.3 /build/libpwizlite-3.0.3/src /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake --color= -Dependee "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/depend.internal". -Dependee "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/depend.internal". Dependee "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/depend.internal". Dependee "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/depend.internal". -Scanning dependencies of target pwizlite-static +Dependee "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/depend.internal". +Dependee "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/depend.internal". Scanning dependencies of target pwizlite-shared make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' -make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' +Scanning dependencies of target pwizlite-static +make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' +make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build +[ 1%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o [ 2%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -[ 2%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp +make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp [ 3%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -[ 5%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -[ 6%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp +[ 5%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp -[ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -[ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -[ 10%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp +[ 6%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o +[ 7%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp +[ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:27: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:29: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:27: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:29: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 10%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = double; pwiz::util::BinaryData::const_reference = const double&; pwiz::util::BinaryData::size_type = long unsigned int]': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here @@ -1562,191 +1525,123 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp:26: + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:82: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 11%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp:26: + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp:26: + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 12%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp -[ 14%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:27: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 11%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = double; pwiz::util::BinaryData::const_reference = const double&; pwiz::util::BinaryData::size_type = long unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = double; pwiz::util::BinaryData::reference = double&; pwiz::util::BinaryData::size_type = long unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = float; pwiz::util::BinaryData::const_reference = const float&; pwiz::util::BinaryData::size_type = long unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = float; pwiz::util::BinaryData::reference = float&; pwiz::util::BinaryData::size_type = long unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = long int; pwiz::util::BinaryData::const_reference = const long int&; pwiz::util::BinaryData::size_type = long unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = long int; pwiz::util::BinaryData::reference = long int&; pwiz::util::BinaryData::size_type = long unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -[ 15%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp +[ 12%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:82: + from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:26: +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); @@ -1759,20 +1654,8 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 16%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp -[ 17%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp -[ 19%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o +[ 14%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1.cpp -[ 20%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -1783,62 +1666,42 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -[ 21%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const string&, bool)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:261:24: warning: unused parameter 'filepath' [-Wunused-parameter] - 261 | const std::string& filepath, - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:262:10: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] - 262 | bool closeMemoryMappedSections) noexcept(true) { - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] - 549 | if (inCDATA) - | ^~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:82: +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 23%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o +[ 15%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp +[ 16%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] - 549 | if (inCDATA) - | ^~ -[ 24%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o +[ 17%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 114 | } else if (init == mask) { - | ~~~~~^~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] - 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] - 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp:33: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 114 | } else if (init == mask) { + | ~~~~~^~~~~~~ +[ 19%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp -[ 26%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o +[ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o +[ 21%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp -[ 28%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const string&, bool)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:261:24: warning: unused parameter 'filepath' [-Wunused-parameter] + 261 | const std::string& filepath, + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:262:10: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] + 262 | bool closeMemoryMappedSections) noexcept(true) { + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 23%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.hpp:29, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:25: @@ -1852,28 +1715,35 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:27: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.hpp:28, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:29: +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:28: +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] - 524 | bool useWorkerThreads) const - | ~~~~~^~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -1915,21 +1785,26 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const string&, bool)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:261:24: warning: unused parameter 'filepath' [-Wunused-parameter] - 261 | const std::string& filepath, - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:262:10: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] - 262 | bool closeMemoryMappedSections) noexcept(true) { - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 24%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] + 549 | if (inCDATA) + | ^~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] + 524 | bool useWorkerThreads) const + | ~~~~~^~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 29%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] + 549 | if (inCDATA) + | ^~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] 81 | stream_offset position) @@ -1982,6 +1857,8 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1660:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1660 | bool zlib = false; // Handle numpress+zlib | ^~~~ +[ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2132:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") @@ -2001,30 +1878,159 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2754:47: warning: unused parameter 'position' [-Wunused-parameter] 2754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 30%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp -[ 32%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1.cpp -[ 33%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = double; pwiz::util::BinaryData::const_reference = const double&; pwiz::util::BinaryData::size_type = long unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = double; pwiz::util::BinaryData::reference = double&; pwiz::util::BinaryData::size_type = long unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = float; pwiz::util::BinaryData::const_reference = const float&; pwiz::util::BinaryData::size_type = long unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = float; pwiz::util::BinaryData::reference = float&; pwiz::util::BinaryData::size_type = long unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = long int; pwiz::util::BinaryData::const_reference = const long int&; pwiz::util::BinaryData::size_type = long unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = long int; pwiz::util::BinaryData::reference = long int&; pwiz::util::BinaryData::size_type = long unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +[ 26%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -[ 34%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp -[ 35%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp -[ 37%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp -[ 38%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2060,6 +2066,8 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +[ 28%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -2107,18 +2115,8 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -[ 39%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 114 | } else if (init == mask) { - | ~~~~~^~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 29%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] 121 | stream_offset position) @@ -2132,17 +2130,15 @@ 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp:33: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 41%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o +[ 30%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp +[ 32%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp -[ 42%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp -[ 43%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2190,6 +2186,8 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 33%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, @@ -2206,14 +2204,18 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -[ 44%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 34%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp +[ 35%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp +[ 37%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: @@ -2239,18 +2241,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:27: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:35: /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] @@ -2260,157 +2250,57 @@ 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:28: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:36: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:29: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:36: +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:82: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] - 524 | bool useWorkerThreads) const - | ~~~~~^~~~~~~~~~~~~~~~ -[ 46%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp -[ 47%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp -[ 48%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp -[ 50%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:29: + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] - 81 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter 'position' [-Wunused-parameter] - 132 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter 'position' [-Wunused-parameter] - 191 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter 'position' [-Wunused-parameter] - 263 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 500 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter 'position' [-Wunused-parameter] - 501 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 693 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter 'position' [-Wunused-parameter] - 694 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter 'position' [-Wunused-parameter] - 966 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter 'position' [-Wunused-parameter] - 1079 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 1355 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter 'position' [-Wunused-parameter] - 1356 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) - | ^~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1660:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 1660 | bool zlib = false; // Handle numpress+zlib - | ^~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2132:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2405:47: warning: unused parameter 'position' [-Wunused-parameter] - 2405 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2506:47: warning: unused parameter 'position' [-Wunused-parameter] - 2506 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2836:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2836 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2754:47: warning: unused parameter 'position' [-Wunused-parameter] - 2754 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] + 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] + 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 38%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp +[ 39%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized in this function [-Wmaybe-uninitialized] + 302 | filterArray(byteBuffer, byteCount,compressed); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized in this function [-Wmaybe-uninitialized] +[ 41%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp +[ 42%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const string&, bool)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:261:24: warning: unused parameter 'filepath' [-Wunused-parameter] + 261 | const std::string& filepath, + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:262:10: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] + 262 | bool closeMemoryMappedSections) noexcept(true) { + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2453,64 +2343,17 @@ 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1151:56: warning: unused parameter 'msg' [-Wunused-parameter] 1151 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const @@ -2523,6 +2366,34 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1262:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1262 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algobase.h:64, + from /usr/include/c++/10/memory:63, + from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, + from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: +/usr/include/c++/10/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename std::__strip_reference_wrapper::type>::__type = double; typename std::__strip_reference_wrapper::type>::__type = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:157: required from here +/usr/include/c++/10/bits/stl_pair.h:567:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 567 | make_pair(_T1&& __x, _T2&& __y) + | ^~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 43%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ @@ -2584,59 +2455,6 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:875:45: warning: unused parameter 'position' [-Wunused-parameter] 875 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] - 121 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] - 162 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] - 356 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const string&)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:575:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 575 | if (id.find("controllerType=0 controllerNumber=1") != 0) @@ -2645,51 +2463,6 @@ 580 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized in this function [-Wmaybe-uninitialized] - 302 | filterArray(byteBuffer, byteCount,compressed); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized in this function [-Wmaybe-uninitialized] -[ 55%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp -[ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp -[ 57%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algobase.h:64, - from /usr/include/c++/10/memory:63, - from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, - from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: -/usr/include/c++/10/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename std::__strip_reference_wrapper::type>::__type = double; typename std::__strip_reference_wrapper::type>::__type = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:157: required from here -/usr/include/c++/10/bits/stl_pair.h:567:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 567 | make_pair(_T1&& __x, _T2&& __y) - | ^~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp:31: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] @@ -2701,120 +2474,44 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const string&, const string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:74:119: warning: unused parameter 'config' [-Wunused-parameter] 74 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ +[ 44%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp +[ 46%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30: + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.hpp:33, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: -/usr/include/boost/bind.hpp: At global scope: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp +[ 48%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp +[ 50%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp +[ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp -[ 60%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp -[ 61%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp -[ 62%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp -[ 64%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/c++/10/utility:70, - from /usr/include/c++/10/algorithm:60, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: -/usr/include/c++/10/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename std::__strip_reference_wrapper::type>::__type = double; typename std::__strip_reference_wrapper::type>::__type = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:157: required from here -/usr/include/c++/10/bits/stl_pair.h:567:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 567 | make_pair(_T1&& __x, _T2&& __y) - | ^~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2850,8 +2547,8 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -[ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp +[ 52%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:33: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -2865,28 +2562,12 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:202:47: warning: unused parameter 'position' [-Wunused-parameter] 202 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:35: -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:36: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp:33: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 66%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:25: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -2934,8 +2615,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 67%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:82:51: warning: unused parameter 'attributes' [-Wunused-parameter] 82 | const Attributes& attributes, @@ -2959,40 +2638,74 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter 'position' [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ +[ 53%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp:26: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 114 | } else if (init == mask) { + | ~~~~~^~~~~~~ +[ 55%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp +[ 56%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:25: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 69%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o +[ 57%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp -[ 70%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:25: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38: +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 71%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] + 524 | bool useWorkerThreads) const + | ~~~~~^~~~~~~~~~~~~~~~ +[ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp:28: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 73%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 74%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -3035,6 +2748,12 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, @@ -3054,12 +2773,8 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] @@ -3194,12 +2909,16 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +[ 62%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 64%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 421 | const SpectrumListPtr spectrumListPtr, @@ -3224,18 +2943,40 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1301:47: warning: unused parameter 'position' [-Wunused-parameter] 1301 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized in this function [-Wmaybe-uninitialized] - 302 | filterArray(byteBuffer, byteCount,compressed); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized in this function [-Wmaybe-uninitialized] +[ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp +[ 66%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:34: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:24548: +/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] + 102 | for (int o=0;o(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:133:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 133 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:135:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 135 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:136:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 136 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:34: warning: unused parameter 'key' [-Wunused-parameter] + 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:44: warning: unused parameter 'value' [-Wunused-parameter] + 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:56: warning: unused parameter 'cvid' [-Wunused-parameter] + 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 69%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] + 81 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter 'position' [-Wunused-parameter] + 132 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter 'position' [-Wunused-parameter] + 191 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter 'position' [-Wunused-parameter] + 263 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 500 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter 'position' [-Wunused-parameter] + 501 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 693 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter 'position' [-Wunused-parameter] + 694 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter 'position' [-Wunused-parameter] + 966 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter 'position' [-Wunused-parameter] + 1079 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 1355 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter 'position' [-Wunused-parameter] + 1356 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) + | ^~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1660:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 1660 | bool zlib = false; // Handle numpress+zlib + | ^~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2132:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2405:47: warning: unused parameter 'position' [-Wunused-parameter] + 2405 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2506:47: warning: unused parameter 'position' [-Wunused-parameter] + 2506 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2836:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 2836 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2754:47: warning: unused parameter 'position' [-Wunused-parameter] + 2754 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 70%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const string&, const string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] + 40 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] + 88 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] + 124 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp:28: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 71%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] + 121 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] + 162 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] + 356 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 73%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 74%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp +[ 75%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.cpp +[ 76%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp +[ 78%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 79%] Linking CXX shared library libpwizlite.so +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.3 CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.74.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.74.0 /usr/lib/aarch64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.74.0 -lpthread +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /usr/include/c++/10/utility:70, + from /usr/include/c++/10/algorithm:60, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: +/usr/include/c++/10/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename std::__strip_reference_wrapper::type>::__type = double; typename std::__strip_reference_wrapper::type>::__type = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:157: required from here +/usr/include/c++/10/bits/stl_pair.h:567:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 567 | make_pair(_T1&& __x, _T2&& __y) + | ^~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.hpp:33, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: +/usr/include/boost/bind.hpp: At global scope: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:35: +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:36: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.3 libpwizlite.so.3 libpwizlite.so +make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' +[ 79%] Built target pwizlite-shared +[ 80%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 82%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ @@ -3319,8 +3449,6 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:700:45: warning: unused parameter 'position' [-Wunused-parameter] 700 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:726:47: warning: unused parameter 'position' [-Wunused-parameter] 726 | stream_offset position) @@ -3347,8 +3475,6 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:875:45: warning: unused parameter 'position' [-Wunused-parameter] 875 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 78%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -3367,14 +3493,8 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1262:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1262 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:34: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 79%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp +[ 83%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const string&)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:575:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 575 | if (id.find("controllerType=0 controllerNumber=1") != 0) @@ -3382,48 +3502,12 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:580:9: note: here 580 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp:31: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:24548: -/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] - 102 | for (int o=0;o(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:133:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 133 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:135:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 135 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:136:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 136 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:34: warning: unused parameter 'key' [-Wunused-parameter] - 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:44: warning: unused parameter 'value' [-Wunused-parameter] - 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:56: warning: unused parameter 'cvid' [-Wunused-parameter] - 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~ -[ 83%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized in this function [-Wmaybe-uninitialized] + 302 | filterArray(byteBuffer, byteCount,compressed); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized in this function [-Wmaybe-uninitialized] +[ 84%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: @@ -3431,6 +3515,12 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp:31: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/memory:63, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, @@ -3451,56 +3541,30 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:27: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const string&, const string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] - 40 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] - 88 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] - 124 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +[ 85%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 84%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const string&, const string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:74:119: warning: unused parameter 'config' [-Wunused-parameter] 74 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ -[ 85%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp -[ 88%] Linking CXX shared library libpwizlite.so -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.3 CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.74.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.74.0 /usr/lib/aarch64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.74.0 -lpthread -[ 89%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -3536,6 +3600,8 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:33: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -3549,19 +3615,20 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:202:47: warning: unused parameter 'position' [-Wunused-parameter] 202 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.3 libpwizlite.so.3 libpwizlite.so +[ 88%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp +[ 89%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp [ 91%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp -make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' -[ 91%] Built target pwizlite-shared -[ 92%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:25: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 92%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -3626,34 +3693,28 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter 'position' [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ +[ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 94%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 94%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -3715,14 +3776,12 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 96%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] @@ -3822,6 +3881,16 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:480:51: warning: unused parameter 'config' [-Wunused-parameter] 480 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ +[ 96%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp +[ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -3887,20 +3956,14 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1301:47: warning: unused parameter 'position' [-Wunused-parameter] 1301 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:34: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 98%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -3927,8 +3990,12 @@ /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:56: warning: unused parameter 'cvid' [-Wunused-parameter] 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ -[ 98%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:34: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:24548: /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] @@ -3977,20 +4044,20 @@ make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/depend make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/depend make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' -cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.3 /build/libpwizlite-3.0.3/src /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.3 /build/libpwizlite-3.0.3/src /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' +cd /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.3 /build/libpwizlite-3.0.3/src /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build +make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'src/CMakeFiles/pwizlite-static.dir/build'. +make[3]: Nothing to be done for 'src/CMakeFiles/pwizlite-shared.dir/build'. make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'src/CMakeFiles/pwizlite-shared.dir/build'. +make[3]: Nothing to be done for 'src/CMakeFiles/pwizlite-static.dir/build'. make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' -[100%] Built target pwizlite-shared +[ 50%] Built target pwizlite-shared [100%] Built target pwizlite-static make[2]: Leaving directory '/build/libpwizlite-3.0.3/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/libpwizlite-3.0.3/obj-aarch64-linux-gnu/CMakeFiles 0 @@ -4044,8 +4111,8 @@ dh_gencontrol -O--build-system=cmake dh_md5sums -O--build-system=cmake dh_builddeb -O--build-system=cmake -dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.3-1_arm64.deb'. dpkg-deb: building package 'libpwizlite3' in '../libpwizlite3_3.0.3-1_arm64.deb'. +dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.3-1_arm64.deb'. dpkg-deb: building package 'libpwizlite3-dbgsym' in '../libpwizlite3-dbgsym_3.0.3-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libpwizlite_3.0.3-1_arm64.changes @@ -4054,12 +4121,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/20810/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20810/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/16964 and its subdirectories -I: Current time: Mon Aug 29 22:53:18 -12 2022 -I: pbuilder-time-stamp: 1661856798 +I: removing directory /srv/workspace/pbuilder/20810 and its subdirectories +I: Current time: Wed Jul 28 18:46:54 +14 2021 +I: pbuilder-time-stamp: 1627447614