Diff of the two buildlogs: -- --- b1/build.log 2021-09-07 03:34:41.783576469 +0000 +++ b2/build.log 2021-09-07 03:36:00.736739663 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Sep 6 15:32:51 -12 2021 -I: pbuilder-time-stamp: 1630985571 +I: Current time: Mon Oct 10 23:57:42 +14 2022 +I: pbuilder-time-stamp: 1665395862 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./mmdb_2.0.5-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.UzQvmBPy/trustedkeys.kbx': General error -gpgv: Signature made Sat May 5 19:09:10 2018 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.HsPTLOMJ/trustedkeys.kbx': General error +gpgv: Signature made Sun May 6 21:09:10 2018 +14 gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: issuer "picca@debian.org" gpgv: Can't check signature: No public key @@ -27,135 +27,169 @@ dpkg-source: info: unpacking mmdb_2.0.5-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1766/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/6690/tmp/hooks/D01_modify_environment starting +debug: Running on codethink11-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6690/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/6690/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1766' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=6690 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.QJyGDAtRmO/pbuilderrc_JUX7 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.QJyGDAtRmO/b1 --logfile b1/build.log mmdb_2.0.5-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.QJyGDAtRmO/pbuilderrc_KKtQ --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.QJyGDAtRmO/b2 --logfile b2/build.log mmdb_2.0.5-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink12-arm64 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more - -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 20 21:24 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/1766/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Aug 5 2021 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Jul 29 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Jul 29 2021 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Jul 29 2021 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Jul 29 2021 more + -rwsr-xr-x 1 root root 51360 Jul 29 2021 mount + -rwxr-xr-x 1 root root 14496 Jul 29 2021 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Oct 10 23:57 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 24 05:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Jul 29 2021 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Jul 29 2021 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Jul 29 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/6690/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -222,7 +256,7 @@ Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] -Fetched 17.9 MB in 3s (6170 kB/s) +Fetched 17.9 MB in 0s (36.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -367,7 +401,8 @@ fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/mmdb-2.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmdb_2.0.5-1_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/mmdb-2.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmdb_2.0.5-1_source.changes dpkg-buildpackage: info: source package mmdb dpkg-buildpackage: info: source version 2.0.5-1 dpkg-buildpackage: info: source distribution unstable @@ -506,45 +541,40 @@ make[1]: Entering directory '/build/mmdb-2.0.5' make all-am make[2]: Entering directory '/build/mmdb-2.0.5' -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/hybrid_36.lo mmdb2/hybrid_36.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_io_stream.lo mmdb2/mmdb_io_stream.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_linalg.lo mmdb2/mmdb_math_linalg.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_symop.lo mmdb2/mmdb_symop.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_atom.lo mmdb2/mmdb_atom.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_machine_.lo mmdb2/mmdb_machine_.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_rand.lo mmdb2/mmdb_math_rand.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_tables.lo mmdb2/mmdb_tables.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/hybrid_36.cpp -fPIC -DPIC -o mmdb2/.libs/hybrid_36.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_io_stream.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_io_stream.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/hybrid_36.lo mmdb2/hybrid_36.cpp +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o 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~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_utils.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_utils.o -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_coormngr.lo mmdb2/mmdb_coormngr.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_coormngr.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_coormngr.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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char*, size_t)', @@ -574,8 +605,10 @@ mmdb2/mmdb_title.cpp:1364:50: note: length computed here 1364 | strncpy ( &(S[11]),remark,IMin(68,strlen(remark)) ); | ~~~~~~^~~~~~~~ -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_align.lo mmdb2/mmdb_math_align.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_align.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_align.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_utils.lo mmdb2/mmdb_utils.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_utils.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_utils.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_coormngr.lo mmdb2/mmdb_coormngr.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_coormngr.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_coormngr.o In file included from /usr/include/string.h:495, from mmdb2/mmdb_mmcif_.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', @@ -587,27 +620,14 @@ mmdb2/mmdb_mmcif_.cpp:1058:46: note: length computed here 1058 | strncpy ( buf,p,IMin(maxlength,strlen(p)+1) ); | ~~~~~~^~~ -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_root.lo mmdb2/mmdb_root.cpp +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_align.lo mmdb2/mmdb_math_align.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_align.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_align.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_root.lo mmdb2/mmdb_root.cpp +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_xml_.lo mmdb2/mmdb_xml_.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_root.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_root.o -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_xml_.lo mmdb2/mmdb_xml_.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_cryst.lo mmdb2/mmdb_cryst.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_xml_.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_xml_.o -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_bfgsmin.lo mmdb2/mmdb_math_bfgsmin.cpp +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_cryst.lo mmdb2/mmdb_cryst.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_cryst.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_cryst.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_bfgsmin.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_bfgsmin.o -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_rwbrook.lo mmdb2/mmdb_rwbrook.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_rwbrook.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_rwbrook.o -In file included from /usr/include/string.h:495, - from mmdb2/mmdb_cryst.cpp:43: -In function 'char* strncpy(char*, const char*, size_t)', - inlined from 'virtual void mmdb::TVect::PDBASCIIDump(mmdb::pstr, int)' at mmdb2/mmdb_cryst.cpp:412:15: -/usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] - 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -mmdb2/mmdb_cryst.cpp: In member function 'virtual void mmdb::TVect::PDBASCIIDump(mmdb::pstr, int)': -mmdb2/mmdb_cryst.cpp:412:48: note: length computed here - 412 | strncpy ( &(S[40]),comment,IMin(30,strlen(comment)) ); - | ~~~~~~^~~~~~~~~ mmdb2/mmdb_root.cpp: In member function 'int mmdb::Root::GenerateNCSMates()': mmdb2/mmdb_root.cpp:1378:43: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 0 and 9 [-Wformat-overflow=] 1378 | sprintf ( chainID,"%s_%i", @@ -624,6 +644,20 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/string.h:495, + from mmdb2/mmdb_cryst.cpp:43: +In function 'char* strncpy(char*, const char*, size_t)', + inlined from 'virtual void mmdb::TVect::PDBASCIIDump(mmdb::pstr, int)' at mmdb2/mmdb_cryst.cpp:412:15: +/usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] + 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +mmdb2/mmdb_cryst.cpp: In member function 'virtual void mmdb::TVect::PDBASCIIDump(mmdb::pstr, int)': +mmdb2/mmdb_cryst.cpp:412:48: note: length computed here + 412 | strncpy ( &(S[40]),comment,IMin(30,strlen(comment)) ); + | ~~~~~~^~~~~~~~~ +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_bfgsmin.lo mmdb2/mmdb_math_bfgsmin.cpp +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_rwbrook.lo mmdb2/mmdb_rwbrook.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_bfgsmin.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_bfgsmin.o mmdb2/mmdb_cryst.cpp: In member function 'int mmdb::Cryst::FixSpaceGroup()': mmdb2/mmdb_cryst.cpp:703:41: warning: '%s' directive writing up to 99 bytes into a region of size 94 [-Wformat-overflow=] 703 | sprintf ( spaceGroupFix,"%c 1 1 %s",spaceGroup[0], @@ -651,7 +685,8 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_ficif.lo mmdb2/mmdb_ficif.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_rwbrook.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_rwbrook.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_ficif.lo mmdb2/mmdb_ficif.cpp In file included from /usr/include/string.h:495, from mmdb2/mmdb_cryst.cpp:43: In function 'char* strncpy(char*, const char*, size_t)', @@ -663,9 +698,8 @@ mmdb2/mmdb_cryst.cpp:877:53: note: length computed here 877 | strncpy ( &(S[55]),spaceGroup,IMin(11,strlen(spaceGroup)) ); | ~~~~~~^~~~~~~~~~~~ -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_fft.lo mmdb2/mmdb_math_fft.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_ficif.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_ficif.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_fft.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_fft.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_fft.lo mmdb2/mmdb_math_fft.cpp mmdb2/mmdb_model.cpp: In member function 'mmdb::Chain* mmdb::Model::GetChainCreate(const char*, bool)': mmdb2/mmdb_model.cpp:3069:46: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 3069 | if (k) sprintf ( chainID,"%s%i",chID,k-1 ); @@ -680,14 +714,13 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_selmngr.lo mmdb2/mmdb_selmngr.cpp -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_io_file.lo mmdb2/mmdb_io_file.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_fft.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_fft.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_selmngr.lo mmdb2/mmdb_selmngr.cpp +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_io_file.lo mmdb2/mmdb_io_file.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_selmngr.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_selmngr.o -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_graph.lo mmdb2/mmdb_math_graph.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_io_file.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_io_file.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_graph.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_graph.o -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_seqsuperpose.lo mmdb2/mmdb_seqsuperpose.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_seqsuperpose.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_seqsuperpose.o +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_graph.lo mmdb2/mmdb_math_graph.cpp +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_seqsuperpose.lo mmdb2/mmdb_seqsuperpose.cpp mmdb2/mmdb_model.cpp: In member function 'void mmdb::Model::MoveChain(mmdb::Chain*&, mmdb::PPAtom, mmdb::PPAtom, int&, int)': mmdb2/mmdb_model.cpp:4644:33: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 0 and 9 [-Wformat-overflow=] 4644 | sprintf ( chainID,"%s_%i",m_chain->chainID,chain_ext ); @@ -738,7 +771,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -no-undefined -Wl,-z,relro -o mmdb2/libmmdb2.la -rpath /usr/lib/aarch64-linux-gnu mmdb2/hybrid_36.lo mmdb2/mmdb_io_stream.lo mmdb2/mmdb_math_linalg.lo mmdb2/mmdb_symop.lo mmdb2/mmdb_atom.lo mmdb2/mmdb_machine_.lo mmdb2/mmdb_math_rand.lo mmdb2/mmdb_tables.lo mmdb2/mmdb_bondmngr.lo mmdb2/mmdb_manager.lo mmdb2/mmdb_mattype.lo mmdb2/mmdb_title.lo mmdb2/mmdb_chain.lo mmdb2/mmdb_mask.lo mmdb2/mmdb_mmcif_.lo mmdb2/mmdb_uddata.lo mmdb2/mmdb_cifdefs.lo mmdb2/mmdb_math_.lo mmdb2/mmdb_model.lo mmdb2/mmdb_utils.lo mmdb2/mmdb_coormngr.lo mmdb2/mmdb_math_align.lo mmdb2/mmdb_root.lo mmdb2/mmdb_xml_.lo mmdb2/mmdb_cryst.lo mmdb2/mmdb_math_bfgsmin.lo mmdb2/mmdb_rwbrook.lo mmdb2/mmdb_ficif.lo mmdb2/mmdb_math_fft.lo mmdb2/mmdb_selmngr.lo mmdb2/mmdb_io_file.lo mmdb2/mmdb_math_graph.lo mmdb2/mmdb_seqsuperpose.lo -lm +libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_graph.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_graph.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_seqsuperpose.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_seqsuperpose.o +/bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/mmdb-2.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -no-undefined -Wl,-z,relro -o mmdb2/libmmdb2.la -rpath /usr/lib/aarch64-linux-gnu mmdb2/hybrid_36.lo mmdb2/mmdb_io_stream.lo mmdb2/mmdb_math_linalg.lo mmdb2/mmdb_symop.lo mmdb2/mmdb_atom.lo mmdb2/mmdb_machine_.lo mmdb2/mmdb_math_rand.lo mmdb2/mmdb_tables.lo mmdb2/mmdb_bondmngr.lo mmdb2/mmdb_manager.lo mmdb2/mmdb_mattype.lo mmdb2/mmdb_title.lo mmdb2/mmdb_chain.lo mmdb2/mmdb_mask.lo mmdb2/mmdb_mmcif_.lo mmdb2/mmdb_uddata.lo mmdb2/mmdb_cifdefs.lo mmdb2/mmdb_math_.lo mmdb2/mmdb_model.lo mmdb2/mmdb_utils.lo mmdb2/mmdb_coormngr.lo mmdb2/mmdb_math_align.lo mmdb2/mmdb_root.lo mmdb2/mmdb_xml_.lo mmdb2/mmdb_cryst.lo mmdb2/mmdb_math_bfgsmin.lo mmdb2/mmdb_rwbrook.lo mmdb2/mmdb_ficif.lo mmdb2/mmdb_math_fft.lo mmdb2/mmdb_selmngr.lo mmdb2/mmdb_io_file.lo mmdb2/mmdb_math_graph.lo mmdb2/mmdb_seqsuperpose.lo -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/10/crtbeginS.o mmdb2/.libs/hybrid_36.o mmdb2/.libs/mmdb_io_stream.o mmdb2/.libs/mmdb_math_linalg.o mmdb2/.libs/mmdb_symop.o mmdb2/.libs/mmdb_atom.o mmdb2/.libs/mmdb_machine_.o mmdb2/.libs/mmdb_math_rand.o mmdb2/.libs/mmdb_tables.o mmdb2/.libs/mmdb_bondmngr.o mmdb2/.libs/mmdb_manager.o mmdb2/.libs/mmdb_mattype.o mmdb2/.libs/mmdb_title.o mmdb2/.libs/mmdb_chain.o mmdb2/.libs/mmdb_mask.o mmdb2/.libs/mmdb_mmcif_.o mmdb2/.libs/mmdb_uddata.o mmdb2/.libs/mmdb_cifdefs.o mmdb2/.libs/mmdb_math_.o mmdb2/.libs/mmdb_model.o mmdb2/.libs/mmdb_utils.o mmdb2/.libs/mmdb_coormngr.o mmdb2/.libs/mmdb_math_align.o mmdb2/.libs/mmdb_root.o mmdb2/.libs/mmdb_xml_.o mmdb2/.libs/mmdb_cryst.o mmdb2/.libs/mmdb_math_bfgsmin.o mmdb2/.libs/mmdb_rwbrook.o mmdb2/.libs/mmdb_ficif.o mmdb2/.libs/mmdb_math_fft.o mmdb2/.libs/mmdb_selmngr.o mmdb2/.libs/mmdb_io_file.o mmdb2/.libs/mmdb_math_graph.o mmdb2/.libs/mmdb_seqsuperpose.o -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/10/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libmmdb2.so.0 -o mmdb2/.libs/libmmdb2.so.0.0.0 libtool: link: (cd "mmdb2/.libs" && rm -f "libmmdb2.so.0" && ln -s "libmmdb2.so.0.0.0" "libmmdb2.so.0") libtool: link: (cd "mmdb2/.libs" && rm -f "libmmdb2.so" && ln -s "libmmdb2.so.0.0.0" "libmmdb2.so") @@ -759,7 +794,7 @@ make[1]: Entering directory '/build/mmdb-2.0.5' make[2]: Entering directory '/build/mmdb-2.0.5' /bin/mkdir -p '/build/mmdb-2.0.5/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ./libtool --mode=install /usr/bin/install -c mmdb2/libmmdb2.la '/build/mmdb-2.0.5/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ./libtool --mode=install /usr/bin/install -c mmdb2/libmmdb2.la '/build/mmdb-2.0.5/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c mmdb2/.libs/libmmdb2.so.0.0.0 /build/mmdb-2.0.5/debian/tmp/usr/lib/aarch64-linux-gnu/libmmdb2.so.0.0.0 libtool: install: (cd /build/mmdb-2.0.5/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmmdb2.so.0.0.0 libmmdb2.so.0 || { rm -f libmmdb2.so.0 && ln -s libmmdb2.so.0.0.0 libmmdb2.so.0; }; }) libtool: install: (cd /build/mmdb-2.0.5/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmmdb2.so.0.0.0 libmmdb2.so || { rm -f libmmdb2.so && ln -s libmmdb2.so.0.0.0 libmmdb2.so; }; }) @@ -798,8 +833,8 @@ dh_md5sums "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_builddeb "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dpkg-deb: building package 'libmmdb2-dev' in '../libmmdb2-dev_2.0.5-1_arm64.deb'. -dpkg-deb: building package 'libmmdb2-0-dbgsym' in '../libmmdb2-0-dbgsym_2.0.5-1_arm64.deb'. dpkg-deb: building package 'libmmdb2-0' in '../libmmdb2-0_2.0.5-1_arm64.deb'. +dpkg-deb: building package 'libmmdb2-0-dbgsym' in '../libmmdb2-0-dbgsym_2.0.5-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mmdb_2.0.5-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -807,12 +842,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/6690/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6690/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1766 and its subdirectories -I: Current time: Mon Sep 6 15:34:40 -12 2021 -I: pbuilder-time-stamp: 1630985680 +I: removing directory /srv/workspace/pbuilder/6690 and its subdirectories +I: Current time: Mon Oct 10 23:58:57 +14 2022 +I: pbuilder-time-stamp: 1665395937